Item Type Title No Grouping

Dataset

typhoidgenomics/TyphoidGenomicsConsortiumMykrobe. (2025) Ingle, Danielle J.; Holt, Kathryn E.; Dyson, Zoe Anne

epinowcast/baselinenowcast-paper. (2025) Johnson, Kaitlyn E.; Abbott, Sam; Bracher, Johannes

Baselines_Application_Data. (2025) Stapper, Manuel

Validation of algorithms identifying diagnosed Obstructive Sleep Apnoea and narcolepsy in coded primary care and linked hospital activity data in England. (2025) Strongman, Helen

jodyphelan/pathogen-profiler. (2025) Phelan, Jody; van Heusden, Peter; Meuli, Michael; Cuddihy, Thom

superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. (2025) Lambert, Joshua W.; Kucharski, Adam J.; Adam, Dillon C.; Funk, Sebastian; Gupte, Pratik; Gruson, Hugo; Azam, James M.; Hartgerink, Chris

Contagent. (2025) Greener, Robert Alexander

jodyphelan/NTM-Profiler. (2025) Phelan, Jody

migariane/eltmle. (2025) Luque-Fernandez, Miguel Angel; Maringe, Camille; Smith, Matthew J.

Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025) Fletcher, Chloe; Moirano, Giovenale; Alcayna, Tilly; Rollock, Leslie; Van Meerbeeck, Cédric J; Mahon, Roché; Trotman, Adrian; Boodram, Laura-Lee; Browne, Tia; Best, Sabu; Lührsen, Daniela; Diaz, Avriel R; Dunbar, Willy; Lippi, Catherine A; Ryan, Sadie J; Colón-González, Felipe J; Stewart-Ibarra, Anna M; Lowe, Rachel

Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025) Fletcher, Chloe; Moirano, Giovenale; Alcayna, Tilly; Rollock, Leslie; Van Meerbeeck, Cédric J; Mahon, Roche; Trotman, Adrian; Boodram, Laura-Lee; Browne, Tia; Best, Sabu; Lührsen, Daniela; Díaz, Avriel R; Dunbar, Willy; Lippi, Catherine A; Ryan, Sadie J; Colón-González, Felipe J; Stewart-Ibarra, Anna M; Lowe, Rachel

NikkiR08/AMR-UCR. (2025) Naylor, Nichola R.

NikkiR08/VAF_AMR_EconBurden. (2025) Naylor, Nichola R.

R Scripts for Analysis of food-group level household and individual dietary data. (2025) Sandalinas, Fanny; Osman, Mohammed; Goto, Rie; Joy, Edward

lucy-gf/flu_model_LG. (2025) Goodfellow, Lucy

francescochecchi/sdn_mortality_2024. (2025) Checchi, Francesco

kingaa/pomp. (2025) King, Aaron A; O'Dea, Eamon; Asfaw, Kidus; Wheeler, Jesse; Breto, Carles; Ionides, Edward; Akinshin, Andrey; Voipio, Timo; Funk, Sebastian

esnightingale/vl-spatial-diagnosis-delay. (2025) Nightingale, Emily

klebgenomics/Kaptive. (2025) Wick, Ryan R.; Stanton, Thomas; Wyres, Kelly L; Holt, Kathryn E.

Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025) Lotto Batista, Martín; Carvalho, Bruno; Gibb, Rory; Solaraju-Murali, Balakrishnan; Flasche, Stefan; Castell, Stefanie; Ghozzi, Stéphane; Lowe, Rachel

Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025) Lim, Ahyoung; Brady, Oliver J.

thegargiulian/GRDM. (2025) Gargiulo, Maria

toshiakiasakura/polio_environmental_surveillance. (2025) Asakura, Toshiaki R.

tomsumner/Timing_of_vaccination. (2025) Sumner, Tom

AndriaMousa/SP-resistance-protective-efficacy-code: v1.1. (2025) Mousa, Andria

ShayAdams/student_metrics_moodlelshtm. (2025) Soremekun, Seyi

cmmid/comix_mobility. (2025) Prestige, Em

simulist: Simulate Disease Outbreak Line List and Contacts Data. (2025) Lambert, Joshua W.; Tamayo, Carmen; Gruson, Hugo; Gupte, Pratik R.; Kucharski, Adam J.; Hartgerink, Chris; Funk, Sebastian

seroanalytics/serojump. (2025) Hodgson, David

ahyoung-lim/Arbo_riskmaps_public. (2025) Lim, Ahyoung

epiverse-trace/tutorials-late. (2025) Campos, Andree Valle; Minter, Amanda; Gruson, Hugo; Degoot, Abdoelnaser M.; Gupte, Pratik; Hartgerink, Chris; Azam, James M.

Code for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2025) Jelmar Sietsma, Anne; Nájera Espinosa, Sarah

epiforecasts/eval-by-method. (2025) Sherratt, Katharine; Funk, Sebastian

Dataset: Early life serological profiles and the development of natural protective humoral immunity to Streptococcus pyogenes in a high burden setting. (2025) Keeley, Alexander J.

ecthomson/Contamination-Filter. (2025) Thomson, Emma C.

ecthomson/Contamination-Phylogeny. (2025) Thomson, Emma C.

epinowcast/epidist. (2025) Abbott, Sam; Howes, Adam; Park, Sang Woo; Funk, Sebastian; Bayer, Damon; DeWitt, Michael

LuciaSegovia/geospatial_analysis. (2025) Segovia De La Revilla, Lucia

gigs: Assess Fetal, Newborn, and Child Growth with International Standards. (2025) Parker, Simon R; Ohuma, Eric O.; Vesel, Linda

opensafely/post-covid-kidney-outcomes. (2025) Mahalingasivam, Viyaasan; Zheng, Bang; lshbz1; Dillingham, Iain

AmpliconTyper. (2025) Spadar, Anton; Mahindroo, Jaspreet; Troman, Catherine; Owusu, Michael; Adu-Sarkodie, Yaw; Abraham, Dilip; Blossom Benny; Govindan, Karthikeyan; Mohan, Venkata Raghava; Dyson, Zoe Anne; Grassly, Nicholas; Holt, Kathryn E.

Robinah23/Community-Vaccine-Impact-Vulnerability-Index-. (2025) Nalwanga, Robinah