Keywords
Number of items: 232.
Dataset
Data for: "COVID-19 vaccine roll-out in Uganda: a case study of uptake and associated factors among health care workers and older people". (2024)
Abaasa, Andrew; Bahemuka, Ubaldo
vaccine-impact/epi_covid. (2020)
Abbas, Kaja M.
Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Continent Summary Reproduction Number (R) Based on Reported Cases. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Continent Summary Reproduction Number (R) Based on Reported Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National Reproduction Number (R) Based on Reported Cases. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National Reproduction Number (R) Estimates Based on Reported Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
epiforecasts/EpiSoon. (2020)
Abbott, Sam; Bosse, Nikos; DeWitt, Michael; Rau, Andrea; Chateigner, Aurelien; Mareschal, Sylvain; Hellewell, Joel
epiforecasts/covid19.sgene.utla.rt. (2021)
Abbott, Sam; Funk, Sebastian
martyn1fyles/HouseholdContactTracing. (2021)
Abbott, Sam; Fyles, Martyn
seabbs/CovidInterventionReview: CC0 license. (2020)
Abbott, Sam; Gaythorpe, Katy A.M.; Imai, Natsuko; Liu, Yang
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam; Hellewell, Joel; Sherratt, Katharine; Gostic, Katelyn; Hickson, Joe; Badr, Hamada S.; DeWitt, Michael; Azam, James M.; EpiForecasts; Funk, Sebastian
epiforecasts/EpiNow2. (2021)
Abbott, Sam; Hickson, Joe; Badr, Hamada S.; Funk, Sebastian; Monticone, Pietro; Ellis, Peter; Munday, James D.; Allen, Jamie; Pearson, Carl A. B.; DeWitt, Michael; Bosse, Nikos; Meakin, Sophie
epiforecasts/covid19.nhs.data: Initial release. (2021)
Abbott, Sam; Meakin, Sophie
seabbs/ecdc-weekly-growth-forecasts. (2022)
Abbott, Sam; Sherratt, Katharine
Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021)
Abbott, Sam; Sherratt, Katharine; Funk, Sebastian
epiforecasts/covid: Submission release. (2020)
Abbott, Sam; Sherratt, Katharine; Funk, Sebastian; Hellewell, Joel
epiforecasts/NCoVUtils. (2020)
Abbott, Sam; Sherratt, Katharine; Gibbs, Hamish; Finger, Flavio; Campbell, Paul; Hellewell, Joel; Barks, Patrick; Meakin, Sophie; Lee, Haze
Additional file 1 of Acceptability and feasibility of strategies to shield the vulnerable during the COVID-19 outbreak: a qualitative study in six Sudanese communities. (2021)
Abdelmagid, Nada; Ahmed, Salma A. E.; Nurelhuda, Nazik; Zainalabdeen, Israa; Ahmed, Aljaile; Fadlallah, Mahmoud Ali; Dahab, Maysoon
jmaburto/ex_USA_racial-ethnic_differences. (2022)
Aburto, José Manuel
Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021)
Aburto, José Manuel; Schöley, Jonas; Kashnitsky, Ilya; Knowles, Ian; Zhang, Luyin; Rahal, Charles; Missov, Trifon I; Dowd, Jennifer B; Mills, Melinda C; Kashyap, Ridhi
Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. (2021)
Adetifa, Ifedayo M. O.; Uyoga, Sophie; Gitonga, John N.; Mugo, Daisy; Otiende, Mark; Nyagwange, James; Karanja, Henry K.; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng’ang’a, Wangari; Rombo, Charles; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W.; Gallagher, Katherine E.; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Bejon, Philip; Ochola-Oyier, Lynette I.; Agweyu, Ambrose; Scott, J. Anthony G.; Warimwe, George M.
SARS-CoV-2 variants-associated outbreaks of COVID-19 in a tertiary institution, North-Central Nigeria: Implications for epidemic control. S1 Data. (2023)
Adeyemi, Oluwapelumi Olufemi; Ndodo, Nnaemeka Darlington; Sulaiman, Mariam Kehinde; Ayansola, Oyeronke Temidayo; Buhari, Oluwabunmi Idera Nimat; Akanbi, Olusola Anuoluwapo; Bolarinwa, Oladimeji Akeem; Chukwu, Chimaobi; Joel, Ireoluwa Yinka; Omoare, Adesuyi Ayodeji; Wahab, Kolawole Wasiu; Obiekea, Celestina; Buhari, Mikhail Olayinka; Ahumibe, Anthony; Kolawole, Caroline Folasade; Okoi, Catherine; Omotesho, Olumuyiwa Babagbemi; Mba, Nwando; Adeniyi, Oluwafemi; Babatunde, Olajumoke; Akintunde, Nathaniel; Ayinla, Ganiu; Akande, Oluwatosin Wuraola; Odunola, Rasheed Adekeye; Saka, Mohammed Jimoh; Musa, Omotosho Ibrahim; Durotoye, Idayat Adenike; Ihekweazu, Chikwe; Adetifa, Ifedayo Morayo; Fadeyi, Abayomi
Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020)
Aldridge, Robert W.; Lewer, Dan; Beale, Sarah; Johnson, Anne M.; Zambon, Maria; Hayward, Andrew C.; Fragaszy, Ellen
Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: a serological study of seven thousand blood donors. (2024)
Alexander, Neal; Dye, Christopher; Busch, Michael P.; Buss, Lewis; Prete Jr, Carlos A.; Brady, Oliver J.; Mee, Paul; Abrahim, Claudia M. M.; Crispim, Myuki A. E.; da Costa, Allyson G.; Salomon, Tassila; Mayaud, Philippe; Oikawa, Márcio K.; Faria, Nuno; Sabino, Ester C.
Additional file 1 of Assessing gender responsiveness of COVID-19 response plans for populations in conflict-affected humanitarian emergencies. (2022)
Asi, Yara M.; Bebasari, Priliantina; Hardy, Emily; Lokot, Michelle; Meagher, Kristen; Ogbe, Emilomo; Parray, Ateeb Ahmad; Sharma, Vandana; Standley, Claire J.; Vahedi, Luissa
Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. (2021)
Assefa, Nega; Demissie, Lemma; Teklemarriam, Zelalem; Oundo, Joseph O.; Madrid, Lola; Dessie, Yadeta; Scott, J. Anthony G.
Dataset of 1241 clients of RMNCH services during the COVID-19 outbreak in Lagos. (2021)
Balogun, Mobolanle; Banke-Thomas, Aduragbemi; Sekoni, Adekemi; Boateng, Godfred O.; Yesufu, Victoria; Wright, Ololade; Ubani, Osinachi; Abayomi, Akin; Afolabi, Bosede B.; Ogunsola, Folasade
rosannaclairebarnard/covidm-mtd-Omi. (2022)
Barnard, Rosanna C.
Household Transmission of Seasonal Coronavirus Infections: Results from the Flu Watch cohort study. (2020)
Beale, Sarah; Lewer, Dan; Aldridge, Robert W.; Johnson, Anne M.; Zambon, Maria; Hayward, Andrew; Fragaszy, Ellen
Parents’ and guardians’ views and experiences of accessing routine childhood vaccinations in England during the coronavirus (COVID-19) pandemic: cross-sectional survey and qualitative interview data. (2020)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline
Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. (2020)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline
COVID-19 vaccination beliefs, attitudes, and behaviours among health and social care workers in the UK: Survey dataset. (2021)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline; Ismail, Sharif; Ojo-Aromokudu, Oyinkansola
description
Open Science during the pandemic. (2020)
Besançon, Lonni; Deforet, Maxime; Leyrat, Clemence; Segalas, Corentin; Jiang, Haiting; Masuzzo, Paola
opensafely/covid-vs-noncovid-deaths-research. (2021)
Bhaskaran, Krishnan; Inglesby, Peter
bokern/ics_covid. (2024)
Bokern, Marleen
Data for "Human judgement forecasting of COVID-19 in the UK" by Bosse et. al (2023). (2023)
Bosse, Nikos I.; Abbott, Sam; Bracher, Johannes; Van leeuwen, Edwin; Cori, Anne; Funk, Sebastian
epiforecasts/transformation-forecast-evaluation. (2023)
Bosse, Nikos; Bracher, Johannes; Abbott, Sam; Funk, Sebastian
KITmetricslab/covid19-forecast-hub-de. (2021)
Bracher, J.; Wolffram, D.; Deuschel, J.; Görgen, K.; Ketterer, J.L.; Ullrich, A.; Abbott, Sam; Barbarossa, M.V.; Bertsimas, D.; Bhatia, S.; Bodych, M.; Bosse, Nikos I.; Burgard, J.P.; Castro, L.; Fairchild, G.; Fuhrmann, J.; Funk, Sebastian; Gogolewski, K.; Gu, Q.; Heyder, S.; Hotz, T.; Kheifetz, Y.; Kirsten, H.; Krueger, T.; Krymova, E.; Li, M.L.; Meinke, J.H.; Michaud, I.J.; Niedzielewski, K.; Ożański, T.; Rakowski, F.; Scholz, M.; Soni, S.; Srivastava, A.; Zieliński, J.; Zou, D.; Gneiting, T.; Schienle, M.
ojal/KenyaSerology. (2021)
Brand, Samuel; Ojal, John
Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Lesotho data. (2023)
Bresser, M; Erhardt, R.M.; Shanaube, K.; Simwinga, M; Mahlatsi, P.A.; Belus, J.; Schaap, Ab; Amstutz, A.; Gachie, Thomas; Glass, T.R.; Kangolo, B.; Mota, M.J.; Floyd, Sian; Katende, B.; Klinkenberg, E.; Ayles, Helen; Reither, K.; Ruperez, M.
Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Zambia data. (2023)
Bresser, M; Erhardt,, R.M.; Shanaube, K; Simwinga, M; Mahlatsi, P.A.; Belus, J; Schaap, Ab; Amstutz, A; Gachie, Thomas; Glass, T.R.; Kangolo, B; Mota, M.J.; Floyd, Sian; Katende, B; Klinkenberg, E; Ayles, Helen; Reither, K; Ruperez, M
rachaelmburke/tbcovidblantyre. (2021)
Burke, Rachael
Codelists for: "Covid-19 during pregnancy and risk of miscarriage or stillbirth: A matched cohort study using English electronic health data". (2023)
Campbell, Jennifer
description
Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. (2021)
Chapman, Lloyd A C; Barnard, Rosanna C; Russell, Timothy W; Abbott, Sam; Van Zandvoort, Kevin; Davies, Nicholas G; Kucharski, Adam J
LloydChapman/COVID_homeless_modelling. (2021)
Chapman, Lloyd A. C.
Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. (2023)
Chapman, Lloyd A.C.; Aubry, Maite; Maset, Noemie; Russell, Timothy; Knock, Edward S; Lees, John A; Mallet, Henri-Pierre; Cao-Lormeau, Van-Mai; Kucharski, Adam J.
francescochecchi/aden_covid. (2020)
Checchi, Francesco
francescochecchi/mortality_capture_recapture_analysis. (2022)
Checchi, Francesco
cmmid/pcr_test_trace. (2020)
Clifford, Samuel; Quilty, Billy
cmmid/travel_screening_strategies. (2020)
Clifford, Samuel; Quilty, Billy J.; Russell, Timothy W.; Liu, Yang; Chan, Yung-Wai Desmond; Pearson, Carl A. B.; Eggo, Rosalind M.; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; Edmunds, W. John
Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020)
Clifford, Samuel; Quilty, Billy; CMMID nCoV working group; Pearson, Carl; Flasche, Stefan; Eggo, Rosalind M.
ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020)
Colbourn, Tim; Waites, William; Manheim, David; Sturniolo, Simone; Kerr, Cliff C.; Panovska-Griffiths, Jasmina; Colbourn, Greg
Social contact data from CoMix survey (Belgium). (2020)
Coletti, Pietro; Wambua, James; Gimma, Amy; Willem, Lander; Vercruysse, Sarah; Vanhoutte, Bieke; Jarvis, Christopher I; Van Zandvoort, Kevin; Edmunds, John; Beutels, Philippe; Hens, Niel
opensafely/covid_collateral_imd. (2024)
Costello, Ruth; Henderson, Alasdair
Clinical codelist - CPRD Aurum - COVID-19. (2022)
Davidson, Jennifer
description
Clinical codelist - HES - COVID-19. (2022)
Davidson, Jennifer
description
CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.
cmmid/covid-age. (2020)
Davies, Nicholas G.
nicholasdavies/covidm-alpha. (2020)
Davies, Nicholas G.
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021)
Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021)
Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John
Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.; Jarvis, Christopher I.; CMMID COVID-19 Working Group; Edmunds, W. John; Jewell, Nicholas P.; Diaz-Ordaz, Karla; Keogh, Ruth H.
cmmid/covid-uk. (2020)
Davies, Nicholas G; Kucharski, Adam J.; Eggo, Rosalind M; Gimma, Amy; COVID-19 Working Group; Edmunds, W. John
Supplementary information files for The effect of COVID rehabilitation for ongoing symptoms post hospitalisation with COVID-19 (PHOSP-R): protocol for a randomised parallel group controlled trial on behalf of the PHOSP consortium. (2023)
Daynes, Enya; Baldwin, Molly; Greening, Neil J.; Yates, Thomas; Bishop, Nicolette C.; Mills, George; Roberts, Matthew; Hamrouni, Malik; Plekhanova, Tatiana; Vogiatzis, Ioannis; Echevarria, Carlos; Nathu, Rashmita; McAuley, Hamish J. C.; Latimer, Lorna; Glennie, Jennifer; Chambers, Francesca; Penfold, Ruth; Hume, Emily; Megaritis, Dimitrios; Alexiou, Charikleia; Potthoff, Sebastian; Hogg, Mitchell James; Haighton, Catherine; Nichol, Bethany; Leavy, Olivia C.; Richardson, Matthew; Elneima, Omer; Singapuri, Amisha; Sereno, Marco; Saunders, Ruth M.; Harris, Victoria C.; Nolan, Claire M.; Bolton, Charlotte; Houchen-Wolloff, Linzy; Harrison, Ewen M.; Lone, Nazir; Quint, Jennifer; Chalmers, James D.; Ho, Ling-Pei; Horsley, Alex; Marks, Michael; Poinasamy, Krisnah; Ramen, Betty; Wain, Louise V.; Brightling, Christopher; Man, William D.-C.; Evans, Rachael; Singh, Sally J.
Global intent to accept COVID-19 vaccines. (2021)
De Figueiredo, Alex
Additional file 1 of Characterising social contacts under COVID-19 control measures in Africa. (2022)
Dobreva, Zlatina; Gimma, Amy; Rohan, Hana; Djoudalbaye, Benjamin; Tshangela, Akhona; Jarvis, Christopher I.; Van Zandvoort, Kevin; Quaife, Matthew
Rapid Safety Assessment of SARS-CoV-2 Vaccines in EU Member States using Electronic Health Care Data Sources (COVID Vaccine Monitor-CVM study): Final Study Report for WP3 (electronic health record data). (2023)
Durán, Carlos E.; Messina, Davide; Gini, Rosa; Riefolo, Fabio; Aragón, María; Belitser, Svetlana; Bissacco, Carlo Alberto; Bots, Sophie H.; de Burgos, Airam; Carreras-Martínez, Juan José; Correcher-Martínez, Elisa; Douglas, Ian J.; Garcia-Poza, Patricia; Girardi, Anna; Herings, Ron; Hoxhaj, Vjola; Huerta, Consuelo; Hyeraci, Giulia; Ientile, Valentina; Ingrasciotta, Ylenia; Limoncella, Giorgio; Lupattelli, Angela; Maglanoc, Luigi; Martin, Ivonne; Martin, Mar; Mira-Iglesias, Ainara; Mohammadi, Sima; Molero, Eva; Nordeng, Hedvig; Oberski, Daniel; Overbeek, Jetty; Pallejà, Meritxell; Riera-Arnau, Judit; Santacà, Katia; Siiskonen, Sat; Souverein, Patrick; Schultze, Anna; Swart, Karin; Trifirò, Gianluca; Urchueguía, Arantxa; Villalobos, Felipe; Weibel, Daniel; Zhao, Jing; Klungel, Olaf; Sturkenboom, Miriam
akira-endo/reanalysis_Fukumoto2021: 'Not finding causal effect' is not 'finding no causal effect' of school closure on COVID-19. (2022)
Endo, Akira
Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
akira-endo/COVID19_backwardtracing. (2020)
Endo, Akira; Kucharski, Adam J.
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. (2020)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
description
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. (2021)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
Dataset of Study: Estimated number of deaths directly avoided because of COVID-19 vaccination among older adults in Colombia. (2022)
Fernández-Niño, Julián Alfredo; Rojas Botero, Maylen Liseth; Arregoces, Leonardo; Ruiz, Fernando
Infecting Minds? The past, present and future of vaccine hesitancy in South Africa. (2024)
Frampton, Sally; Seeley, Janet; Orievulu, Kingsley; Matthews, Philippa C.; Hordern, Joshua
epiforecasts/ons_severity_estimates. (2022)
Funk, Sebastian
cmmid/uk_movement_communities_covid. (2021)
Gibbs, Hamish
UK Colocation Dashboard. (2020)
Gibbs, Hamish; CMMID nCov Working Group; Eggo, Rosalind M.; Grundy, Chris; Kucharski, Adam J.
Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. (2021)
Gibbs, Hamish; Waterlow, Naomi R.; Cheshire, James; Danon, Leon; Liu, Yang; Grundy, Chris; Kucharski, Adam J.; Eggo, Rosalind M.
hamishgibbs/facebook_population_2020_2021. (2022)
Gibbs, Hamish; Waterlow, Naomi R.; Cheshire, James; Danon, Leon; Liu, Yang; Grundy, Chris; Kucharski, Adam J.; Eggo, Rosalind M.
Mean contacts by age and date. (2022)
Gimma, Amy; Munday, James D.; Wong, Kerry L. M.; Coletti, Pietro; Van Zandvoort, Kevin; Prem, Kiesha; Klepac, Petra; Rubin, G. James; Funk, Sebastian; Edmunds, W. John; Jarvis, Christopher I.
CoMix social contact data (Austria). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (France). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Italy). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Poland). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Portugal). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Spain). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (UK). (2021)
Gimma, Amy; Wong, Kerry LM; Van Xandvoort, Kevin; Jarvis, Christopher I.; Edmunds, W. John
CoMix social contact data (Denmark). (2021)
Gimma, Amy; Wong, Kerry Lm; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Estonia). (2022)
Gimma, Amy; Wong, Kerry Lm; Coletti, Pietro; Jarvis, Christopher I.
Data supporting "A Snapshot of the Practicality of, and Barriers to, Implementation of COVID-19 Interventions: Public Health and Healthcare Workers' Perceptions". (2021)
Glazik, Rosanna
description
BronnerG/Hosp_Vacc_analysis: v1. (2023)
Gonçalves, Bronner P.
lucy-gf/imd-covid. (2024)
Goodfellow, Lucy
grahams99/Enhanced_surveillance_questionnaire. (2023)
Graham, Sophie
cmmid/ringbp. (2020)
Hellewell, Joel
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020)
Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos; Jarvis, Christopher; Russell, Timothy; Munday, James; Kucharski, Adam; Edmunds, W John; Funk, Sebastian; Eggo, Rosalind; Sun, Fiona; Flasche, Stefan; Quilty, Billy; Davies, Nicholas; Liu, Yang; Clifford, Samuel; Klepac, Petra; Jit, Mark; Diamond, Charlie; Gibbs, Hamish; Van Zandvoort, Kevin
timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020)
Hellewell, Joel; Lucas, Tim; Davis, Emma; Abbott, Sam; Gimma, Amy; Thompson, Robin
dchodge/hero-study: Version submitted with WOR reviewers comments. (2022)
Hodgson, David; Abbott, Sam
jarvisc1/comix_covid-19-first_wave. (2020)
Jarvis, Christopher
jarvisc1/comix_uk_covid_restrictions. (2021)
Jarvis, Christopher
epinowcast/baselinenowcast-paper. (2025)
Johnson, Kaitlyn E.; Abbott, Sam; Bracher, Johannes
Inferring COVID-19 cases from recent death. (2020)
Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Van zandvoort, Kevin; Jarvis, Christopher
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Zandvoort, Kevin; Clifford, Samuel; Jarvis, Christopher; Russell, Timothy; Funk, Sebastian; Gibbs, Hamish; Eggo, Rosalind M.; Kucharski, Adam J.; CMMID COVID-19 Working Group; Edmunds, W. John
thibautjombart/covid19_bed_occupancy: Second major release. (2020)
Jombart, Thibaut; Clifford, Samuel; Pearson, Carl A. B. Pearson; Rees, Eleanor; Nightingale, Emily; Procter, Simon; Knight, Gwen
SungmokJung/Projection_Japan_COVID19 v1.0.0. (2021)
Jung, Sung-mok; Endo, Akira; Kinoshita, Ryo; Nishiura, Hiroshi
Medical survey data to monitor trends in HIV epidemiology and assess the prevalence of Non-Communicable Diseases (NCDs) and associated factors in Central Uganda. (2023)
Kakande, Ayoub; Makanga, Ronald; Kasamba, Ivan; Kimono, Beatrice; Mugisha, Joseph; Ruzagira, Eugene; Kaleebu, Pontiano; Seeley, Janet; Newton, Rob
html
Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. (2021)
Kitonsa, Jonathan; Kamacooko, Onesmus; Bahemuka, Ubaldo M.; Kibengo, Freddie; Kakande, Ayoub; Wajja, Anne; Basajja, Vincent; Lumala, Alfred; Ssemwanga, Edward; Asaba, Robert; Mugisha, Joseph; Pierce, Benjamin F.; Shattock, Robin; Kaleebu, Pontiano; Ruzagira, Eugene
description
gwenknight/hai_first_wave. (2021)
Knight, Gwen
SARS-CoV-2 Seroprevalence in Kenya dataset. (2024)
Koech, Angela; Omuse, Geoffrey; Mugo, Alex; Mwaniki, Isaac; Mutunga, Joseph; Mukhanya, Moses; Wanje, Onesmus; Mwashigadi, Grace; Katana, Geoffrey; Craik, Rachel; Von Dadelszen, Peter; Le Doare, Kirsty; Temmermen, Marleen; The PRECISE Network
description
Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". (2021)
Koltai, Mihaly
mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021)
Koltai, Mihaly
adamkucharski/covid-import-model. (2021)
Kucharski, Adam J.
Probability of a large 2019-nCoV outbreak following introduction of cases. (2020)
Kucharski, Adam J.; Russell, Timothy W.; Diamond, Charlie; CMMID nCoV working group; Funk, Sebastian; Eggo, Rosalind M.
COVID-19 Vaccine Perceptions on Reddit. (2022)
Kumar, Navin; Corpus, Isabel; Hans, Meher; Harle, Nikhil; Yang, Nan; McDonald, Curtis; Sakai, Shinpei Nakamura; Janmohamed, Kamila; Chen, Keyu; Altice, Frederick L; Tang, Weiming; Schwartz, Jason L; Jones-Jang, S Mo; Saha, Koustuv; Memon, Shahan Ali; Bauch, Chris T; Choudhury, Munmun De; Papakyriakopoulos, Orestis; Tucker, Joseph D.; Goyal, Abhay; Tyagi, Aman; Khoshnood, Kaveh; Omer, Saad
Data For: Optimising Instructional Materials for COVID-19 Rapid Tests for Self-Sampling and Testing: Mapping the Optimization Process of Manufacturer’s Instructions for Use for Self-Testing RDTs Intended for Low Literacy Contexts. (2024)
Kumwenda, Moses Kelly; Mukoka, Madalo; Mhango, Owen; Choko, Augustine Talumba
Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. (2021)
Laban, Natasha
COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020)
Lazarus, Jeffrey V.; Ratzan, Scott; Palayew, Adam; Billari, Francesco C.; Binagwaho, Agnes; Kimball, Spencer; Larson, Heidi J.; Melegaro, Alessia; Rabin, Kenneth; White, Trenton M.; El-Mohandes, Ayman
qleclerc/COVID_bed_occupancy. (2021)
Leclerc, Quentin J.
COVID19 settings of transmission - collected reports database. (2020)
Leclerc, Quentin J.; Fuller, Naomi M.; Knight, Lisa E.; Funk, Sebastian; Knight, Gwenan M.
qleclerc/nhs_pathways_report. (2020)
Leclerc, Quentin J.; Nightingale, Emily; Abbott, Sam
tsleng93/SocialBubble: Social Bubble (including density dependence). (2020)
Leng, Trystan; Flasche, Stefan
“An increase in COVID-19 patients would be overwhelming”: A qualitative description of healthcare workers’ experiences during the first wave of COVID-19 (March 2020 to October 2020) at Malawi’s largest referral hospital. (2022)
Limbani, Felix; Kapumba, Blessings
Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021)
Lindsey, Benjamin B.; Villabona-Arenas, Christian Julian; Atkins, Katherine E.; Campbell, Finlay
yangclaraliu/COVID19_NPIs_vs_Rt. (2020)
Liu, Yang
yangclaraliu/COVID_Vac_Delay. (2022)
Liu, Yang
yangclaraliu/2019nCoV_proportion_asym: WOR Submission. (2020)
Liu, Yang; Funk, Sebastian; Flasche, Stefan
yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020)
Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; CMMID COVID-19 Working Group; Jit, Mark; Flasche, Stefan; Klepac, Petra
yangclaraliu/covid_vac_africa: BMCMed_R3. (2023)
Liu, Yang; Procter, Simon R; Pearson, Carl A. B.; Madriz Montero, Andres; Torres-Rueda, Sergio; Asfaw, Elias; Uzochukwu, Benjamin; Drake, Tom; Bergren, Eleanor; Eggo, Rosalind M.; Ruiz, Francis; Ndembi, Nicaise; Nonvignon, Justice; Jit, Mark; Vassall, Anna
Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021)
Liu, Yang; Sandmann, Frank G.; Barnard, Rosanna C.; Pearson, Carl A.B.; CMMID Working-19 Working Group; Pastore, Roberta; Pebody, Richard; Flasche, Stefan; Jit, Mark
Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. (2021)
Liu, Yang; Sandmann, Frank; Barnard, Rosanna C.; Pearson, Carl A. B.; LSHTM CMMID COVID-19 Working Group; Davies, Nicholas G.; Jit, Mark
LSHTM COVID-19 Projections. (2020)
London School of Hygiene & Tropical Medicine
Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021)
Lovell-Read, Francesca A.; Funk, Sebastian; Obolski, Uri; Donnelly, Christl A.; Thompson, Robin N.
COVID-19 and older people’s wellbeing in northern KwaZulu-Natal – the importance of relationships. Interviews data matrix. (2022)
Manyaapelo, Thabang; Seeley, Janet
Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. (2022)
McQuaid, C. Finn; Henrion, Marc Y. R.; Burke, Rachael M.; MacPherson, Peter; Nzawa-Soko, Rebecca; Horton, Katherine C.
Social contact information from PIPSA residents in uMkhanyakude before and during the Covid-19 pandemic – data from the Umoya Omuhle and Covid Social Contacts studies. (2021)
Mccreesh, Nicky; Dlamini, Vuyiswa; Edwards, Anita; Olivier, Stephen; Dayi, Njabulo; Dikgale, Keabetswe; Nxumalo, Siyabonga; Dreyer, Jaco; Baisley, Kathy; Siedner, Mark J.; White, Richard G.; Herbst, Kobus; Grant, Alison D.; Harling, Guy
epiforecasts/covid19-hospital-activity. (2022)
Meakin, Sophie; Abbott, Sam
Paul-Mee/clic_brazil. (2021)
Mee, Paul; Alexander, Neal; Colón-González, Felipe J
jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021)
Munday, James D.
jdmunday/CoMix_schools_reopening. (2021)
Munday, James D.; Jarvis, Christopher I.
CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021)
Munday, James D; Jarvis, Christopher I.; Gimma, Amy; Wong, Kerry L; van Zandvoort, Kevin; Funk, Sebastian; Edmunds, W. John
esnightingale/covid_deaths_spatial. (2022)
Nightingale, Emily
COVID-19 length of hospital stay. (2020)
Nightingale, Emily; Waterlow, Naomi; Clifford, Samuel; Rees, Eleanor
Interview Questions for WW Dashboards. (2024)
O'reilly, Kathleen M.
Online survey questions: Social, ethical and behavioural aspects of COVID-19. (2020)
Osterrieder, Anne; Poomchaichote, Tassawan; Cuman, Giulia; Pan-ngum, Wirichada; Cheah, Phee-Kheng; Waithira, Naomi; Mukaka, Mavuto; Naemiratch, Bhensri; Kulpijit, Natinee; Chanviriyavuth, Rita; Asarath, Supa-at; Ruangkajorn, Supanat; Silan, Margherita; Stoppa, Silvia; Zuanna, Gianpiero Della; Cheah, Phaik Kin; Ongkili, Darlene; Schneiders, Mira; Mackworth-Young, Constance R.S.; Cheah, Phaik Yeong
Replication Data for: Impact of COVID-19 on mortality in coastal Kenya: a longitudinal open cohort study. (2023)
Otiende, Mark; Nyaguara, Amek; Bottomley, Christian; Walumbe, David; Mochamah, George; Amadi, David; Nyundo, Christopher; Kagucia, Eunice; Etyang, Anthony; Adetifa, Ifedayo; Brand, Sam; Maitha, Eric; Chondo, Elwyn; Nzomo, Eddy; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng'ang'a, Wangari; Barasa, Edwin; Tsofa, Benjamin; Mwangangi, Joseph; Bejon, Philip; Agweyu, Ambrose; Williams, Thomas N.; Scott, J. Anthony G.
covidregionaldata: Subnational data for COVID-19 epidemiology. (2021)
Palmer, Joseph; Sherratt, Katharine; Martin-Nielsen, Richard; Bevan, Jonnie; Gibbs, Hamish; CMMID COVID-19 Working Group; Funk, Sebastian; Abbott, Sam
Covid 2019 tracker. (2020)
Parker, Edward
vac-lshtm/VaC_tracker. (2021)
Parker, Edward
opensafely/ckd-coverage-ve. (2022)
Parker, Edward; Horne, Elsie
Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021)
Pavelka, Martin; van Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Jarcuska, Pavel; Krajci, Marek; Flasche, Stefan; Funk, Sebastian
PROTECT initiative extended Covid-19 occupational questionnaire. (2021)
Pearce, Neil
Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021)
Pearson, Carl A B; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; Eggo, Rosalind M; Vassall, Anna; Jit, Mark
cmmid/covidTestVac. (2021)
Pearson, Carl A. B.
cmmid/SA2UK. (2021)
Pearson, Carl A. B.; Russell, Timothy W.; Kucharski, Adam J.
cmmid/covidm_reports: HEA Snapshot. (2023)
Pearson, Carl A. B.; Thompson, Sam; Van Zandvoort, Kevin; Eggo, Rosalind M.; Jarvis, Christopher I.
Projections of COVID-19 epidemics in LMIC countries. (2020)
Pearson, Carl A. B.; Van zandvoort, Kevin; Jarvis, Christopher I.; Davies, Nicholas G.; Thompson, Sam; Checchi, Francesco; Jit, Mark; Eggo, Rosalind M.; LSHTM CMMID COVID-19 Working Group
COVID-Profiler. (2020)
Phelan, Jody; Deelder, Wouter
Topic guide for qualitative study: Social, ethical and behavioural aspects of COVID-19. (2020)
Poomchaichote, Tassawan; Naemiratch, Bhensri; Schneiders, Mira; Kulpijit, Natinee; Cuman, Giulia; Pan-ngum, Wirichada; Cheah, Phee-Kheng; Waithira, Naomi; Mukaka, Mavuto; Chanviriyavuth, Rita; Asarath, Supa-at; Ruangkajorn, Supanat; Silan, Margherita; Stoppa, Silvia; Zuanna, Gianpiero Della; Ongkili, Darlene; Cheah, Phaik Kin; Osterrieder, Anne; Mackworth-young, Kulpiji; Cheah, Phaik Yeong
kieshaprem/synthetic-contact-matrices. (2021)
Prem, Kiesha
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel
cmmid/comix_mobility. (2025)
Prestige, Em
Depression among healthcare workers in Lusaka, Zambia during the COVID-19 pandemic. (2023)
Pry, Jake; Simbeza, Sandra; Geng, Elvin; Mutale, Jacob; Sikombe, Kombatende; Jere, Lazarus; Bukankala, Chama; Beres, Laura
rachaelpung/covid_missed_infections. (2023)
Pung, Rachael
mquaife/kenya_mixing. (2020)
Quaife, Matthew
cmmid/covid_quar_test_import_risk. (2021)
Quilty, Billy
cmmid/quar_test_contact_tracing. (2021)
Quilty, Billy
R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". (2021)
Quilty, Billy J; Hellewell, Joel; Clifford, Samuel; CMMID COVID-19 working group
description
Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020)
Rees, Eleanor M.; Nightingale, Emily S.; Jafari, Yalda; Waterlow, Naomi R.; Clifford, Samuel; B. Pearson, Carl A.; CMMID Working Group; Jombart, Thibaut; Procter, Simon R.; Knight, Gwenan M.
Data for: "Vaccine Confidence and Hesitancy at the start of COVID-19 vaccine deployment in the UK: An embedded mixed-methods study". (2021)
Roberts, Chrissy; Brindle, Hannah; Rogers, Nina; Eggo, Rosalind M.; Enria, Luisa; Lees, Shelley
description
Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. (2021)
Roberts, Chrissy; Rogers, Nina; Waterlow, Naomi; Brindle, Hannah; Enria, Luisa; Lees, Shelley
description
SARS-CoV-2 Seroprevalence in The Gambia dataset. (2024)
Roca, Anna; Janha, Ramatoulie; Bah, Alasana; Jah, Hawanatu; Tourey, Fatima; Idris, Yahaya; Keita, Saikou; Gaye, Yassin; Jallow, Samba; Faye-joof, Tisbeh; Njie, Baboucarr; Craik, Rachel; Mohammed, Nuredin; von Dadelszen, Peter; D’alessandro, Umberto
description
rmjlros/COVID19_care_home_NPIs. (2021)
Rosello, Alicia; Abbott, Sam; Barnard, Rosanna C.
Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020)
Russell, Timothy W.; Golding, Nick; Hellewell, Joel; Abbott, Sam; Pearson, Carl A B; Van zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.; CMMID COVID-19 working group
thimotei/CFR_calculation. (2020)
Russell, Timothy W.; Hellewell, Joel; Abbott, Sam; Jarvis, Christopher; Zandvoort, Kevin van; Ratnayake, Ruwan; CMMID nCov working group; Flasche, Stefan; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.
Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020)
Russell, Timothy W.; Hellewell, Joel; Jarvis, Christopher I.; Van-Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Flasche, Stefan; Eggo, Rosalind M; Kucharski, Adam J.
thimotei/covid_travel_restrictions. (2020)
Russell, Timothy W.; Wu, Joseph T; Clifford, Samuel; CMMID COVID-19 working group; Edmunds, W John; Kucharski, Adam J.; Jit, Mark
Data for: "Humanitarian sector (international non-governmental organisations) support to the community in Goma city/DRC during the COVID-19 pandemic period: expectations and reality". (2023)
Sahani, Mateus Kambale; Mayhew, Susannah; Hamuli, Roger Paluku
description
Data for Figures and Tables in "Bounce backs amid continued losses: Life expectancy changes since COVID-19". (2022)
Schöley, Jonas; Aburto, José Manuel; Kashnitsky, Ilya; Kniffka, Maxi S.; Zhang, Luyin; Jaadla, Hannaliis; Dowd, Jennifer B.; Kashyap, Ridhi
Life table data for "Bounce backs amid continued losses: Life expectancy changes since COVID-19". (2022)
Schöley, Jonas; Aburto, José Manuel; Kashnitsky, Ilya; Kniffka, Maxi S.; Zhang, Luyin; Jaadla, Hannaliis; Dowd, Jennifer B.; Kashyap, Ridhi
gasparrini/ItalyCOVIDdeath. (2020)
Scortichini, Matteo; Schneider dos santos, Rochelle; De' Donato; De Sario, Manuela; Michelozzi, Paola; Davoli, Marina; Masselot, Pierre; Sera, Francesco; Gasparrini, Antonio
The impact of COVID-19 on older people in a rural district of KwaZulu-Natal, South Africa. (2022)
Seeley, Janet; Manyaapelo, Thabang
fsera/COVIDWeather. (2021)
Sera, Francesco; Abbott, Sam; Roye, Dominic
epiforecasts/rt-comparison-uk-public: v1.0.0. (2020)
Sherratt, Katharine
covid19-forecast-hub-europe/euro-hub-ensemble: Zenodo release. (2022)
Sherratt, Katharine; Funk, Sebastian
epiforecasts/eval-by-method. (2025)
Sherratt, Katharine; Funk, Sebastian
DidDrog11/smoking_covid_bayes. (2021)
Simons, David
The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 11) - Data. (2021)
Simons, David; Shahab, Lion; Brown, Jamie; Perski, Olga
The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 9) - Data. (2020)
Simons, David; Shahab, Lion; Brown, Jamie; Perski, Olga
Baselines_Application_Data. (2025)
Stapper, Manuel
STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021)
Strongman, Helen; Carreira, Helena
folder_zip
Hand Hygiene Social Norms among Healthcare Workers During Early COVID-19: Results of a Global Survey. (2022)
Szekely, Aron; Gon, Giorgia; Lowe, Hattie; Tosi, Marco
Interview transcripts for: "Understanding the impact of COVID-19 pandemic and its control measures on women and children: Zimbabwe case study". (2025)
Taruvinga, Tinotenda
description
(MaCoCo) Livelihoods dataset. (2025)
Taruvinga, Tinotenda
johntaz/COVID-Collateral. (2020)
Tazare, John
opensafely/post-covid-outcomes-research. (2022)
Tazare, John; Walker, Alex
COVID-19 risk group - Neurological disease codelist. (2020)
Thomas, Sara
description
Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. (2020)
Tomlinson, Laurie A.; Iwagami, Masao; Bidulka, Patrick; Wong, Angel Y.S.
National Survey of Sexual Attitudes and Lifestyles COVID-19 Study, 2020. (2021)
University of Glasgow, MRC/CSO Social and Public Health Sciences; University College London; London School of Hygiene and Tropical Medicine
Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. (2021)
Uyoga, Sophie; Adetifa, Ifedayo M.O.; Otiende, Mark; Gitonga, John N.; Mugo, Daisy; Nyagwange, James; Karanja, Henry Kibe; Tuju, James; Makale, Johnstone; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng’ang’a, Wangari; Chege, Evelynn; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W.; Gallagher, Katherine E.; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Mwangangi, Joseph; Bejon, Philip; Ochola-Oyier, Lynette I.; Warimwe, George M.; Agweyu, Ambrose; Scott, J. Anthony G.
COVID-19 vaccine development pipeline. (2020)
Vaccine Centre
Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. (2023)
Van Zandvoort, Kevin; Checchi, Francesco
Changing Worlds (US): Psychological responses to the climate crisis in young people and their agency to build the world they hope to see. (2022)
Vercammen, Ans; Lawrance, Emma; Wray, Brittany
UK prevalence of risk factors for severe COVID-19 disease, by age and region: point prevalence estimates in 2019 and 2014, using electronic health records. (2020)
Walker, Jemma; Grint, Daniel; Strongman, Helen; Eggo, Rosalind M.; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E.; Rentsch, Christopher; Douglas, Ian J.; Mathur, Rohini; Wong, Angel; Quint, Jennifer K.; Andrews, Nick; Lopez-bernal, James; Scott, Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen
folder_zip
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin; Stark, Ariane; Evan Ray; Bosse, Nikos; Reich, Nicholas G; Sherratt, Katharine; Shah, Apurv; Wattanachit, Nutcha; Khoale1096; Huang, Yuxin David; Gerding, Aaron; Gruson, Hugo; Cramer, Estee; Shandross, Li; Abbott, Sam; Funk, Sebastian
Social Contact Rates (SOCRATES) Data Tool. (2020)
Willem, Lander; Hoang, Van Thang; Funk, Sebastian; Coletti, Pietro; Beutels, Philippe; Hens, Niel
opensafely/risk-factors-research. (2020)
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description
covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022)
actions-user; Sherratt, Katharine; Gruson, Hugo; Funk, Sebastian; Bracher, Johannes; BIOCOM-SC; Walraven, Robert; miraanto; h-veronika; Rodiah, Isti; gr3gr3; Kraus, David; hgurung-iem; epiforecasts-bot; Xu, Frost Tianjian; Heyder, Stefan; aniruddhadiga; Abbott, Sam; Sun, Tao; Mingio, Marco; Deuschel, Jannik; pmontman; janezz25; neele-itwm; Gibson, Graham; EpiGraph; Tarantino, Barbara; Karlen, Dean; Bhatia, Sangeeta; borjarv