Keywords
Number of items: 228.
  • Data for: "COVID-19 vaccine roll-out in Uganda: a case study of uptake and associated factors among health care workers and older people". (2024) Abaasa, Andrew, Bahemuka, Ubaldo
  • vaccine-impact/epi_covid. (2020) Abbas, Kaja M.
  • Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Continent Summary Reproduction Number (R) Based on Reported Cases. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Continent Summary Reproduction Number (R) Based on Reported Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National Reproduction Number (R) Based on Reported Cases. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National Reproduction Number (R) Estimates Based on Reported Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • epiforecasts/EpiSoon. (2020) Abbott, Sam, Bosse, Nikos, DeWitt, Michael, Rau, Andrea, Chateigner, Aurelien, Mareschal, Sylvain, Hellewell, Joel
  • epiforecasts/covid19.sgene.utla.rt. (2021) Abbott, Sam, Funk, Sebastian
  • martyn1fyles/HouseholdContactTracing. (2021) Abbott, Sam, Fyles, Martyn
  • seabbs/CovidInterventionReview: CC0 license. (2020) Abbott, Sam, Gaythorpe, Katy A.M., Imai, Natsuko, Liu, Yang
  • EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024) Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian
  • epiforecasts/EpiNow2. (2021) Abbott, Sam, Hickson, Joe, Badr, Hamada S., Funk, Sebastian, Monticone, Pietro, Ellis, Peter, Munday, James D., Allen, Jamie, Pearson, Carl A. B., DeWitt, Michael, Bosse, Nikos, Meakin, Sophie
  • epiforecasts/covid19.nhs.data: Initial release. (2021) Abbott, Sam, Meakin, Sophie
  • seabbs/ecdc-weekly-growth-forecasts. (2022) Abbott, Sam, Sherratt, Katharine
  • Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian
  • epiforecasts/covid: Submission release. (2020) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel
  • epiforecasts/NCoVUtils. (2020) Abbott, Sam, Sherratt, Katharine, Gibbs, Hamish, Finger, Flavio, Campbell, Paul, Hellewell, Joel, Barks, Patrick, Meakin, Sophie, Lee, Haze
  • Additional file 1 of Acceptability and feasibility of strategies to shield the vulnerable during the COVID-19 outbreak: a qualitative study in six Sudanese communities. (2021) Abdelmagid, Nada, Ahmed, Salma A. E., Nurelhuda, Nazik, Zainalabdeen, Israa, Ahmed, Aljaile, Fadlallah, Mahmoud Ali, Dahab, Maysoon
  • jmaburto/ex_USA_racial-ethnic_differences. (2022) Aburto, José Manuel
  • Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021) Aburto, José Manuel, Schöley, Jonas, Kashnitsky, Ilya, Knowles, Ian, Zhang, Luyin, Rahal, Charles, Missov, Trifon I, Dowd, Jennifer B, Mills, Melinda C, Kashyap, Ridhi
  • Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. (2021) Adetifa, Ifedayo M. O., Uyoga, Sophie, Gitonga, John N., Mugo, Daisy, Otiende, Mark, Nyagwange, James, Karanja, Henry K., Tuju, James, Wanjiku, Perpetual, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Rombo, Charles, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Bejon, Philip, Ochola-Oyier, Lynette I., Agweyu, Ambrose, Scott, J. Anthony G., Warimwe, George M.
  • SARS-CoV-2 variants-associated outbreaks of COVID-19 in a tertiary institution, North-Central Nigeria: Implications for epidemic control. S1 Data. (2023) Adeyemi, Oluwapelumi Olufemi, Ndodo, Nnaemeka Darlington, Sulaiman, Mariam Kehinde, Ayansola, Oyeronke Temidayo, Buhari, Oluwabunmi Idera Nimat, Akanbi, Olusola Anuoluwapo, Bolarinwa, Oladimeji Akeem, Chukwu, Chimaobi, Joel, Ireoluwa Yinka, Omoare, Adesuyi Ayodeji, Wahab, Kolawole Wasiu, Obiekea, Celestina, Buhari, Mikhail Olayinka, Ahumibe, Anthony, Kolawole, Caroline Folasade, Okoi, Catherine, Omotesho, Olumuyiwa Babagbemi, Mba, Nwando, Adeniyi, Oluwafemi, Babatunde, Olajumoke, Akintunde, Nathaniel, Ayinla, Ganiu, Akande, Oluwatosin Wuraola, Odunola, Rasheed Adekeye, Saka, Mohammed Jimoh, Musa, Omotosho Ibrahim, Durotoye, Idayat Adenike, Ihekweazu, Chikwe, Adetifa, Ifedayo Morayo, Fadeyi, Abayomi
  • Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020) Aldridge, Robert W., Lewer, Dan, Beale, Sarah, Johnson, Anne M., Zambon, Maria, Hayward, Andrew C., Fragaszy, Ellen
  • Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: a serological study of seven thousand blood donors. (2024) Alexander, Neal, Dye, Christopher, Busch, Michael P., Buss, Lewis, Prete Jr, Carlos A., Brady, Oliver J., Mee, Paul, Abrahim, Claudia M. M., Crispim, Myuki A. E., da Costa, Allyson G., Salomon, Tassila, Mayaud, Philippe, Oikawa, Márcio K., Faria, Nuno, Sabino, Ester C.
  • Additional file 1 of Assessing gender responsiveness of COVID-19 response plans for populations in conflict-affected humanitarian emergencies. (2022) Asi, Yara M., Bebasari, Priliantina, Hardy, Emily, Lokot, Michelle, Meagher, Kristen, Ogbe, Emilomo, Parray, Ateeb Ahmad, Sharma, Vandana, Standley, Claire J., Vahedi, Luissa
  • Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. (2021) Assefa, Nega, Demissie, Lemma, Teklemarriam, Zelalem, Oundo, Joseph O., Madrid, Lola, Dessie, Yadeta, Scott, J. Anthony G.
  • Dataset of 1241 clients of RMNCH services during the COVID-19 outbreak in Lagos. (2021) Balogun, Mobolanle, Banke-Thomas, Aduragbemi, Sekoni, Adekemi, Boateng, Godfred O., Yesufu, Victoria, Wright, Ololade, Ubani, Osinachi, Abayomi, Akin, Afolabi, Bosede B., Ogunsola, Folasade
  • rosannaclairebarnard/covidm-mtd-Omi. (2022) Barnard, Rosanna C.
  • Household Transmission of Seasonal Coronavirus Infections: Results from the Flu Watch cohort study. (2020) Beale, Sarah, Lewer, Dan, Aldridge, Robert W., Johnson, Anne M., Zambon, Maria, Hayward, Andrew, Fragaszy, Ellen
  • Parents’ and guardians’ views and experiences of accessing routine childhood vaccinations in England during the coronavirus (COVID-19) pandemic: cross-sectional survey and qualitative interview data. (2020) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline
  • Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. (2020) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline
  • COVID-19 vaccination beliefs, attitudes, and behaviours among health and social care workers in the UK: Survey dataset. (2021) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline, Ismail, Sharif, Ojo-Aromokudu, Oyinkansola description
  • Open Science during the pandemic. (2020) Besançon, Lonni, Deforet, Maxime, Leyrat, Clemence, Segalas, Corentin, Jiang, Haiting, Masuzzo, Paola
  • opensafely/covid-vs-noncovid-deaths-research. (2021) Bhaskaran, Krishnan, Inglesby, Peter
  • bokern/ics_covid. (2024) Bokern, Marleen
  • Data for "Human judgement forecasting of COVID-19 in the UK" by Bosse et. al (2023). (2023) Bosse, Nikos I., Abbott, Sam, Bracher, Johannes, Van leeuwen, Edwin, Cori, Anne, Funk, Sebastian
  • epiforecasts/transformation-forecast-evaluation. (2023) Bosse, Nikos, Bracher, Johannes, Abbott, Sam, Funk, Sebastian
  • KITmetricslab/covid19-forecast-hub-de. (2021) Bracher, J., Wolffram, D., Deuschel, J., Görgen, K., Ketterer, J.L., Ullrich, A., Abbott, Sam, Barbarossa, M.V., Bertsimas, D., Bhatia, S., Bodych, M., Bosse, Nikos I., Burgard, J.P., Castro, L., Fairchild, G., Fuhrmann, J., Funk, Sebastian, Gogolewski, K., Gu, Q., Heyder, S., Hotz, T., Kheifetz, Y., Kirsten, H., Krueger, T., Krymova, E., Li, M.L., Meinke, J.H., Michaud, I.J., Niedzielewski, K., Ożański, T., Rakowski, F., Scholz, M., Soni, S., Srivastava, A., Zieliński, J., Zou, D., Gneiting, T., Schienle, M.
  • ojal/KenyaSerology. (2021) Brand, Samuel, Ojal, John
  • Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Lesotho data. (2023) Bresser, M, Erhardt, R.M., Shanaube, K., Simwinga, M, Mahlatsi, P.A., Belus, J., Schaap, Ab, Amstutz, A., Gachie, Thomas, Glass, T.R., Kangolo, B., Mota, M.J., Floyd, Sian, Katende, B., Klinkenberg, E., Ayles, Helen, Reither, K., Ruperez, M.
  • Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Zambia data. (2023) Bresser, M, Erhardt,, R.M., Shanaube, K, Simwinga, M, Mahlatsi, P.A., Belus, J, Schaap, Ab, Amstutz, A, Gachie, Thomas, Glass, T.R., Kangolo, B, Mota, M.J., Floyd, Sian, Katende, B, Klinkenberg, E, Ayles, Helen, Reither, K, Ruperez, M
  • rachaelmburke/tbcovidblantyre. (2021) Burke, Rachael
  • Codelists for: "Covid-19 during pregnancy and risk of miscarriage or stillbirth: A matched cohort study using English electronic health data". (2023) Campbell, Jennifer description
  • Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020) Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Thézé, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thaís M., da Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete, Carlos A., Ashworth, Jordan, Nakaya, Helder I., Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Átila D., Braga, Carlos K.V., Gerber, Alexandra L., de C. Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S., Lima, Cristiano X., Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud, Mauricio W., Castiñeiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., de Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., de Sá, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G, Nogueira, Maurício L., Ferguson, Neil M, Costa, Silvia F., Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno Rodrigues
  • Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020) Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Thézé, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thaís M., da Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete, Carlos A., Ashworth, Jordan, Nakaya, Helder I., Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Átila D., Braga, Carlos K.V., Gerber, Alexandra L., de C. Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S., Lima, Cristiano X., Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud, Mauricio W., Castiñeiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., de Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., de Sá, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G, Nogueira, Maurício L., Ferguson, Neil M, Costa, Silvia F., Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno Rodrigues
  • Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. (2021) Chapman, Lloyd A C, Barnard, Rosanna C, Russell, Timothy W, Abbott, Sam, Van Zandvoort, Kevin, Davies, Nicholas G, Kucharski, Adam J
  • LloydChapman/COVID_homeless_modelling. (2021) Chapman, Lloyd A. C.
  • Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. (2023) Chapman, Lloyd A.C., Aubry, Maite, Maset, Noemie, Russell, Timothy, Knock, Edward S, Lees, John A, Mallet, Henri-Pierre, Cao-Lormeau, Van-Mai, Kucharski, Adam J.
  • francescochecchi/aden_covid. (2020) Checchi, Francesco
  • francescochecchi/mortality_capture_recapture_analysis. (2022) Checchi, Francesco
  • cmmid/pcr_test_trace. (2020) Clifford, Samuel, Quilty, Billy
  • cmmid/travel_screening_strategies. (2020) Clifford, Samuel, Quilty, Billy J., Russell, Timothy W., Liu, Yang, Chan, Yung-Wai Desmond, Pearson, Carl A. B., Eggo, Rosalind M., Endo, Akira, CMMID COVID-19 Working Group, Flasche, Stefan, Edmunds, W. John
  • Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020) Clifford, Samuel, Quilty, Billy, CMMID nCoV working group, Pearson, Carl, Flasche, Stefan, Eggo, Rosalind M.
  • ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020) Colbourn, Tim, Waites, William, Manheim, David, Sturniolo, Simone, Kerr, Cliff C., Panovska-Griffiths, Jasmina, Colbourn, Greg
  • Social contact data from CoMix survey (Belgium). (2020) Coletti, Pietro, Wambua, James, Gimma, Amy, Willem, Lander, Vercruysse, Sarah, Vanhoutte, Bieke, Jarvis, Christopher I, Van Zandvoort, Kevin, Edmunds, John, Beutels, Philippe, Hens, Niel
  • opensafely/covid_collateral_imd. (2024) Costello, Ruth, Henderson, Alasdair
  • Clinical codelist - CPRD Aurum - COVID-19. (2022) Davidson, Jennifer description
  • Clinical codelist - HES - COVID-19. (2022) Davidson, Jennifer description
  • CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G.
  • cmmid/covid-age. (2020) Davies, Nicholas G.
  • nicholasdavies/covidm-alpha. (2020) Davies, Nicholas G.
  • Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
  • Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
  • Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G., Jarvis, Christopher I., CMMID COVID-19 Working Group, Edmunds, W. John, Jewell, Nicholas P., Diaz-Ordaz, Karla, Keogh, Ruth H.
  • cmmid/covid-uk. (2020) Davies, Nicholas G, Kucharski, Adam J., Eggo, Rosalind M, Gimma, Amy, COVID-19 Working Group, Edmunds, W. John
  • Supplementary information files for The effect of COVID rehabilitation for ongoing symptoms post hospitalisation with COVID-19 (PHOSP-R): protocol for a randomised parallel group controlled trial on behalf of the PHOSP consortium. (2023) Daynes, Enya, Baldwin, Molly, Greening, Neil J., Yates, Thomas, Bishop, Nicolette C., Mills, George, Roberts, Matthew, Hamrouni, Malik, Plekhanova, Tatiana, Vogiatzis, Ioannis, Echevarria, Carlos, Nathu, Rashmita, McAuley, Hamish J. C., Latimer, Lorna, Glennie, Jennifer, Chambers, Francesca, Penfold, Ruth, Hume, Emily, Megaritis, Dimitrios, Alexiou, Charikleia, Potthoff, Sebastian, Hogg, Mitchell James, Haighton, Catherine, Nichol, Bethany, Leavy, Olivia C., Richardson, Matthew, Elneima, Omer, Singapuri, Amisha, Sereno, Marco, Saunders, Ruth M., Harris, Victoria C., Nolan, Claire M., Bolton, Charlotte, Houchen-Wolloff, Linzy, Harrison, Ewen M., Lone, Nazir, Quint, Jennifer, Chalmers, James D., Ho, Ling-Pei, Horsley, Alex, Marks, Michael, Poinasamy, Krisnah, Ramen, Betty, Wain, Louise V., Brightling, Christopher, Man, William D.-C., Evans, Rachael, Singh, Sally J.
  • Global intent to accept COVID-19 vaccines. (2021) De Figueiredo, Alex
  • Additional file 1 of Characterising social contacts under COVID-19 control measures in Africa. (2022) Dobreva, Zlatina, Gimma, Amy, Rohan, Hana, Djoudalbaye, Benjamin, Tshangela, Akhona, Jarvis, Christopher I., Van Zandvoort, Kevin, Quaife, Matthew
  • Rapid Safety Assessment of SARS-CoV-2 Vaccines in EU Member States using Electronic Health Care Data Sources (COVID Vaccine Monitor-CVM study): Final Study Report for WP3 (electronic health record data). (2023) Durán, Carlos E., Messina, Davide, Gini, Rosa, Riefolo, Fabio, Aragón, María, Belitser, Svetlana, Bissacco, Carlo Alberto, Bots, Sophie H., de Burgos, Airam, Carreras-Martínez, Juan José, Correcher-Martínez, Elisa, Douglas, Ian J., Garcia-Poza, Patricia, Girardi, Anna, Herings, Ron, Hoxhaj, Vjola, Huerta, Consuelo, Hyeraci, Giulia, Ientile, Valentina, Ingrasciotta, Ylenia, Limoncella, Giorgio, Lupattelli, Angela, Maglanoc, Luigi, Martin, Ivonne, Martin, Mar, Mira-Iglesias, Ainara, Mohammadi, Sima, Molero, Eva, Nordeng, Hedvig, Oberski, Daniel, Overbeek, Jetty, Pallejà, Meritxell, Riera-Arnau, Judit, Santacà, Katia, Siiskonen, Sat, Souverein, Patrick, Schultze, Anna, Swart, Karin, Trifirò, Gianluca, Urchueguía, Arantxa, Villalobos, Felipe, Weibel, Daniel, Zhao, Jing, Klungel, Olaf, Sturkenboom, Miriam
  • akira-endo/reanalysis_Fukumoto2021: 'Not finding causal effect' is not 'finding no causal effect' of school closure on COVID-19. (2022) Endo, Akira
  • Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020) Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
  • akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020) Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
  • akira-endo/COVID19_backwardtracing. (2020) Endo, Akira, Kucharski, Adam J.
  • Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. (2020) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy description
  • Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. (2021) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy
  • Dataset of Study: Estimated number of deaths directly avoided because of COVID-19 vaccination among older adults in Colombia. (2022) Fernández-Niño, Julián Alfredo, Rojas Botero, Maylen Liseth, Arregoces, Leonardo, Ruiz, Fernando
  • Infecting Minds? The past, present and future of vaccine hesitancy in South Africa. (2024) Frampton, Sally, Seeley, Janet, Orievulu, Kingsley, Matthews, Philippa C., Hordern, Joshua
  • epiforecasts/ons_severity_estimates. (2022) Funk, Sebastian
  • cmmid/uk_movement_communities_covid. (2021) Gibbs, Hamish
  • UK Colocation Dashboard. (2020) Gibbs, Hamish, CMMID nCov Working Group, Eggo, Rosalind M., Grundy, Chris, Kucharski, Adam J.
  • Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. (2021) Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.
  • hamishgibbs/facebook_population_2020_2021. (2022) Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.
  • Mean contacts by age and date. (2022) Gimma, Amy, Munday, James D., Wong, Kerry L. M., Coletti, Pietro, Van Zandvoort, Kevin, Prem, Kiesha, Klepac, Petra, Rubin, G. James, Funk, Sebastian, Edmunds, W. John, Jarvis, Christopher I.
  • CoMix social contact data (Austria). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (France). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Italy). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Poland). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Portugal). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Spain). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (UK). (2021) Gimma, Amy, Wong, Kerry LM, Van Xandvoort, Kevin, Jarvis, Christopher I., Edmunds, W. John
  • CoMix social contact data (Denmark). (2021) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Estonia). (2022) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.
  • Data supporting "A Snapshot of the Practicality of, and Barriers to, Implementation of COVID-19 Interventions: Public Health and Healthcare Workers' Perceptions". (2021) Glazik, Rosanna description
  • BronnerG/Hosp_Vacc_analysis: v1. (2023) Gonçalves, Bronner P.
  • lucy-gf/imd-covid. (2024) Goodfellow, Lucy
  • grahams99/Enhanced_surveillance_questionnaire. (2023) Graham, Sophie
  • cmmid/ringbp. (2020) Hellewell, Joel
  • Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin
  • timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020) Hellewell, Joel, Lucas, Tim, Davis, Emma, Abbott, Sam, Gimma, Amy, Thompson, Robin
  • dchodge/hero-study: Version submitted with WOR reviewers comments. (2022) Hodgson, David, Abbott, Sam
  • jarvisc1/comix_uk_covid_restrictions. (2021) Jarvis, Christopher
  • Contact survey during COVID-19. (2020) Jarvis, Christopher, Van zandvoort, Kevin, Gimma, Amy, Prem, Kiesha, CMMID, COVID-19 working group, Klepac, Petra, Rubin, G. James, Edmunds, W. John
  • Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher
  • Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
  • thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
  • SungmokJung/Projection_Japan_COVID19 v1.0.0. (2021) Jung, Sung-mok, Endo, Akira, Kinoshita, Ryo, Nishiura, Hiroshi
  • Medical survey data to monitor trends in HIV epidemiology and assess the prevalence of Non-Communicable Diseases (NCDs) and associated factors in Central Uganda. (2023) Kakande, Ayoub, Makanga, Ronald, Kasamba, Ivan, Kimono, Beatrice, Mugisha, Joseph, Ruzagira, Eugene, Kaleebu, Pontiano, Seeley, Janet, Newton, Rob html
  • Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. (2021) Kitonsa, Jonathan, Kamacooko, Onesmus, Bahemuka, Ubaldo M., Kibengo, Freddie, Kakande, Ayoub, Wajja, Anne, Basajja, Vincent, Lumala, Alfred, Ssemwanga, Edward, Asaba, Robert, Mugisha, Joseph, Pierce, Benjamin F., Shattock, Robin, Kaleebu, Pontiano, Ruzagira, Eugene description
  • gwenknight/hai_first_wave. (2021) Knight, Gwen
  • SARS-CoV-2 Seroprevalence in Kenya dataset. (2024) Koech, Angela, Omuse, Geoffrey, Mugo, Alex, Mwaniki, Isaac, Mutunga, Joseph, Mukhanya, Moses, Wanje, Onesmus, Mwashigadi, Grace, Katana, Geoffrey, Craik, Rachel, Von Dadelszen, Peter, Le Doare, Kirsty, Temmermen, Marleen, The PRECISE Network description
  • Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". (2021) Koltai, Mihaly
  • mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021) Koltai, Mihaly
  • adamkucharski/covid-import-model. (2021) Kucharski, Adam J.
  • Probability of a large 2019-nCoV outbreak following introduction of cases. (2020) Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.
  • COVID-19 Vaccine Perceptions on Reddit. (2022) Kumar, Navin, Corpus, Isabel, Hans, Meher, Harle, Nikhil, Yang, Nan, McDonald, Curtis, Sakai, Shinpei Nakamura, Janmohamed, Kamila, Chen, Keyu, Altice, Frederick L, Tang, Weiming, Schwartz, Jason L, Jones-Jang, S Mo, Saha, Koustuv, Memon, Shahan Ali, Bauch, Chris T, Choudhury, Munmun De, Papakyriakopoulos, Orestis, Tucker, Joseph D., Goyal, Abhay, Tyagi, Aman, Khoshnood, Kaveh, Omer, Saad
  • Data For: Optimising Instructional Materials for COVID-19 Rapid Tests for Self-Sampling and Testing: Mapping the Optimization Process of Manufacturer’s Instructions for Use for Self-Testing RDTs Intended for Low Literacy Contexts. (2024) Kumwenda, Moses Kelly, Mukoka, Madalo, Mhango, Owen, Choko, Augustine Talumba
  • Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. (2021) Laban, Natasha
  • COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020) Lazarus, Jeffrey V., Ratzan, Scott, Palayew, Adam, Billari, Francesco C., Binagwaho, Agnes, Kimball, Spencer, Larson, Heidi J., Melegaro, Alessia, Rabin, Kenneth, White, Trenton M., El-Mohandes, Ayman
  • qleclerc/COVID_bed_occupancy. (2021) Leclerc, Quentin J.
  • COVID19 settings of transmission - collected reports database. (2020) Leclerc, Quentin J., Fuller, Naomi M., Knight, Lisa E., Funk, Sebastian, Knight, Gwenan M.
  • qleclerc/nhs_pathways_report. (2020) Leclerc, Quentin J., Nightingale, Emily, Abbott, Sam
  • tsleng93/SocialBubble: Social Bubble (including density dependence). (2020) Leng, Trystan, Flasche, Stefan
  • “An increase in COVID-19 patients would be overwhelming”: A qualitative description of healthcare workers’ experiences during the first wave of COVID-19 (March 2020 to October 2020) at Malawi’s largest referral hospital. (2022) Limbani, Felix, Kapumba, Blessings
  • Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021) Lindsey, Benjamin B., Villabona-Arenas, Christian Julian, Atkins, Katherine E., Campbell, Finlay
  • yangclaraliu/COVID19_NPIs_vs_Rt. (2020) Liu, Yang
  • yangclaraliu/COVID_Vac_Delay. (2022) Liu, Yang
  • yangclaraliu/2019nCoV_proportion_asym: WOR Submission. (2020) Liu, Yang, Funk, Sebastian, Flasche, Stefan
  • yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra
  • yangclaraliu/covid_vac_africa: BMCMed_R3. (2023) Liu, Yang, Procter, Simon R, Pearson, Carl A. B., Madriz Montero, Andres, Torres-Rueda, Sergio, Asfaw, Elias, Uzochukwu, Benjamin, Drake, Tom, Bergren, Eleanor, Eggo, Rosalind M., Ruiz, Francis, Ndembi, Nicaise, Nonvignon, Justice, Jit, Mark, Vassall, Anna
  • Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021) Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark
  • Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. (2021) Liu, Yang, Sandmann, Frank, Barnard, Rosanna C., Pearson, Carl A. B., LSHTM CMMID COVID-19 Working Group, Davies, Nicholas G., Jit, Mark
  • LSHTM COVID-19 Projections. (2020) London School of Hygiene & Tropical Medicine
  • Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021) Lovell-Read, Francesca A., Funk, Sebastian, Obolski, Uri, Donnelly, Christl A., Thompson, Robin N.
  • Interviews data matrix. (2022) Manyaapelo, Thabang, Seeley, Janet
  • Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. (2022) McQuaid, C. Finn, Henrion, Marc Y. R., Burke, Rachael M., MacPherson, Peter, Nzawa-Soko, Rebecca, Horton, Katherine C.
  • Social contact information from PIPSA residents in uMkhanyakude before and during the Covid-19 pandemic – data from the Umoya Omuhle and Covid Social Contacts studies. (2021) Mccreesh, Nicky, Dlamini, Vuyiswa, Edwards, Anita, Olivier, Stephen, Dayi, Njabulo, Dikgale, Keabetswe, Nxumalo, Siyabonga, Dreyer, Jaco, Baisley, Kathy, Siedner, Mark J., White, Richard G., Herbst, Kobus, Grant, Alison D., Harling, Guy
  • epiforecasts/covid19-hospital-activity. (2022) Meakin, Sophie, Abbott, Sam
  • Paul-Mee/clic_brazil. (2021) Mee, Paul, Alexander, Neal, Colón-González, Felipe J
  • jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021) Munday, James D.
  • jdmunday/CoMix_schools_reopening. (2021) Munday, James D., Jarvis, Christopher I.
  • CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021) Munday, James D, Jarvis, Christopher I., Gimma, Amy, Wong, Kerry L, van Zandvoort, Kevin, Funk, Sebastian, Edmunds, W. John
  • esnightingale/covid_deaths_spatial. (2022) Nightingale, Emily
  • COVID-19 length of hospital stay. (2020) Nightingale, Emily, Waterlow, Naomi, Clifford, Samuel, Rees, Eleanor
  • Interview Questions for WW Dashboards. (2024) O'reilly, Kathleen M.
  • Online survey questions: Social, ethical and behavioural aspects of COVID-19. (2020) Osterrieder, Anne, Poomchaichote, Tassawan, Cuman, Giulia, Pan-ngum, Wirichada, Cheah, Phee-Kheng, Waithira, Naomi, Mukaka, Mavuto, Naemiratch, Bhensri, Kulpijit, Natinee, Chanviriyavuth, Rita, Asarath, Supa-at, Ruangkajorn, Supanat, Silan, Margherita, Stoppa, Silvia, Zuanna, Gianpiero Della, Cheah, Phaik Kin, Ongkili, Darlene, Schneiders, Mira, Mackworth-Young, Constance R.S., Cheah, Phaik Yeong
  • Replication Data for: Impact of COVID-19 on mortality in coastal Kenya: a longitudinal open cohort study. (2023) Otiende, Mark, Nyaguara, Amek, Bottomley, Christian, Walumbe, David, Mochamah, George, Amadi, David, Nyundo, Christopher, Kagucia, Eunice, Etyang, Anthony, Adetifa, Ifedayo, Brand, Sam, Maitha, Eric, Chondo, Elwyn, Nzomo, Eddy, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng'ang'a, Wangari, Barasa, Edwin, Tsofa, Benjamin, Mwangangi, Joseph, Bejon, Philip, Agweyu, Ambrose, Williams, Thomas N., Scott, J. Anthony G.
  • covidregionaldata: Subnational data for COVID-19 epidemiology. (2021) Palmer, Joseph, Sherratt, Katharine, Martin-Nielsen, Richard, Bevan, Jonnie, Gibbs, Hamish, CMMID COVID-19 Working Group, Funk, Sebastian, Abbott, Sam
  • Covid 2019 tracker. (2020) Parker, Edward
  • vac-lshtm/VaC_tracker. (2021) Parker, Edward
  • opensafely/ckd-coverage-ve. (2022) Parker, Edward, Horne, Elsie
  • Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021) Pavelka, Martin, van Zandvoort, Kevin, Abbott, Sam, Sherratt, Katharine, Majdan, Marek, Jarcuska, Pavel, Krajci, Marek, Flasche, Stefan, Funk, Sebastian
  • PROTECT initiative extended Covid-19 occupational questionnaire. (2021) Pearce, Neil
  • Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021) Pearson, Carl A B, Bozzani, Fiammetta, Procter, Simon R, Davies, Nicholas G, Huda, Maryam, Jensen, Henning Tarp, Keogh-Brown, Marcus, Khalid, Muhammad, Sweeney, Sedona, Torres-Rueda, Sergio, Eggo, Rosalind M, Vassall, Anna, Jit, Mark
  • cmmid/covidTestVac. (2021) Pearson, Carl A. B.
  • cmmid/SA2UK. (2021) Pearson, Carl A. B., Russell, Timothy W., Kucharski, Adam J.
  • cmmid/covidm_reports: HEA Snapshot. (2023) Pearson, Carl A. B., Thompson, Sam, Van Zandvoort, Kevin, Eggo, Rosalind M., Jarvis, Christopher I.
  • Projections of COVID-19 epidemics in LMIC countries. (2020) Pearson, Carl A. B., Van zandvoort, Kevin, Jarvis, Christopher I., Davies, Nicholas G., Thompson, Sam, Checchi, Francesco, Jit, Mark, Eggo, Rosalind M., LSHTM CMMID COVID-19 Working Group
  • COVID-Profiler. (2020) Phelan, Jody, Deelder, Wouter
  • Topic guide for qualitative study: Social, ethical and behavioural aspects of COVID-19. (2020) Poomchaichote, Tassawan, Naemiratch, Bhensri, Schneiders, Mira, Kulpijit, Natinee, Cuman, Giulia, Pan-ngum, Wirichada, Cheah, Phee-Kheng, Waithira, Naomi, Mukaka, Mavuto, Chanviriyavuth, Rita, Asarath, Supa-at, Ruangkajorn, Supanat, Silan, Margherita, Stoppa, Silvia, Zuanna, Gianpiero Della, Ongkili, Darlene, Cheah, Phaik Kin, Osterrieder, Anne, Mackworth-young, Kulpiji, Cheah, Phaik Yeong
  • kieshaprem/synthetic-contact-matrices. (2021) Prem, Kiesha
  • Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
  • cmmid/comix_mobility. (2025) Prestige, Em
  • Depression among healthcare workers in Lusaka, Zambia during the COVID-19 pandemic. (2023) Pry, Jake, Simbeza, Sandra, Geng, Elvin, Mutale, Jacob, Sikombe, Kombatende, Jere, Lazarus, Bukankala, Chama, Beres, Laura
  • rachaelpung/covid_missed_infections. (2023) Pung, Rachael
  • mquaife/kenya_mixing. (2020) Quaife, Matthew
  • cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy
  • cmmid/quar_test_contact_tracing. (2021) Quilty, Billy
  • R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". (2021) Quilty, Billy J, Hellewell, Joel, Clifford, Samuel, CMMID COVID-19 working group description
  • Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020) Rees, Eleanor M., Nightingale, Emily S., Jafari, Yalda, Waterlow, Naomi R., Clifford, Samuel, B. Pearson, Carl A., CMMID Working Group, Jombart, Thibaut, Procter, Simon R., Knight, Gwenan M.
  • Data for: "Vaccine Confidence and Hesitancy at the start of COVID-19 vaccine deployment in the UK: An embedded mixed-methods study". (2021) Roberts, Chrissy, Brindle, Hannah, Rogers, Nina, Eggo, Rosalind M., Enria, Luisa, Lees, Shelley description
  • Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. (2021) Roberts, Chrissy, Rogers, Nina, Waterlow, Naomi, Brindle, Hannah, Enria, Luisa, Lees, Shelley description
  • SARS-CoV-2 Seroprevalence in The Gambia dataset. (2024) Roca, Anna, Janha, Ramatoulie, Bah, Alasana, Jah, Hawanatu, Tourey, Fatima, Idris, Yahaya, Keita, Saikou, Gaye, Yassin, Jallow, Samba, Faye-joof, Tisbeh, Njie, Baboucarr, Craik, Rachel, Mohammed, Nuredin, von Dadelszen, Peter, D’alessandro, Umberto description
  • rmjlros/COVID19_care_home_NPIs. (2021) Rosello, Alicia, Abbott, Sam, Barnard, Rosanna C.
  • Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020) Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group
  • thimotei/CFR_calculation. (2020) Russell, Timothy W., Hellewell, Joel, Abbott, Sam, Jarvis, Christopher, Zandvoort, Kevin van, Ratnayake, Ruwan, CMMID nCov working group, Flasche, Stefan, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J.
  • Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020) Russell, Timothy W., Hellewell, Joel, Jarvis, Christopher I., Van-Zandvoort, Kevin, Abbott, Sam, Ratnayake, Ruwan, Flasche, Stefan, Eggo, Rosalind M, Kucharski, Adam J.
  • thimotei/covid_travel_restrictions. (2020) Russell, Timothy W., Wu, Joseph T, Clifford, Samuel, CMMID COVID-19 working group, Edmunds, W John, Kucharski, Adam J., Jit, Mark
  • Data for: "Humanitarian sector (international non-governmental organisations) support to the community in Goma city/DRC during the COVID-19 pandemic period: expectations and reality". (2023) Sahani, Mateus Kambale, Mayhew, Susannah, Hamuli, Roger Paluku description
  • Data for Figures and Tables in "Bounce backs amid continued losses: Life expectancy changes since COVID-19". (2022) Schöley, Jonas, Aburto, José Manuel, Kashnitsky, Ilya, Kniffka, Maxi S., Zhang, Luyin, Jaadla, Hannaliis, Dowd, Jennifer B., Kashyap, Ridhi
  • Life table data for "Bounce backs amid continued losses: Life expectancy changes since COVID-19". (2022) Schöley, Jonas, Aburto, José Manuel, Kashnitsky, Ilya, Kniffka, Maxi S., Zhang, Luyin, Jaadla, Hannaliis, Dowd, Jennifer B., Kashyap, Ridhi
  • gasparrini/ItalyCOVIDdeath. (2020) Scortichini, Matteo, Schneider dos santos, Rochelle, De' Donato, De Sario, Manuela, Michelozzi, Paola, Davoli, Marina, Masselot, Pierre, Sera, Francesco, Gasparrini, Antonio
  • The impact of COVID-19 on older people in a rural district of KwaZulu-Natal, South Africa. (2022) Seeley, Janet, Manyaapelo, Thabang
  • fsera/COVIDWeather. (2021) Sera, Francesco, Abbott, Sam, Roye, Dominic
  • epiforecasts/rt-comparison-uk-public: v1.0.0. (2020) Sherratt, Katharine
  • covid19-forecast-hub-europe/euro-hub-ensemble: Zenodo release. (2022) Sherratt, Katharine, Funk, Sebastian
  • epiforecasts/eval-by-method. (2025) Sherratt, Katharine, Funk, Sebastian
  • DidDrog11/smoking_covid_bayes. (2021) Simons, David
  • The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 11) - Data. (2021) Simons, David, Shahab, Lion, Brown, Jamie, Perski, Olga
  • The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 9) - Data. (2020) Simons, David, Shahab, Lion, Brown, Jamie, Perski, Olga
  • STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021) Strongman, Helen, Carreira, Helena folder_zip
  • Hand Hygiene Social Norms among Healthcare Workers During Early COVID-19: Results of a Global Survey. (2022) Szekely, Aron, Gon, Giorgia, Lowe, Hattie, Tosi, Marco
  • johntaz/COVID-Collateral. (2020) Tazare, John
  • opensafely/post-covid-outcomes-research. (2022) Tazare, John, Walker, Alex
  • COVID-19 risk group - Neurological disease codelist. (2020) Thomas, Sara description
  • Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. (2020) Tomlinson, Laurie A., Iwagami, Masao, Bidulka, Patrick, Wong, Angel Y.S.
  • National Survey of Sexual Attitudes and Lifestyles COVID-19 Study, 2020. (2021) University of Glasgow, MRC/CSO Social and Public Health Sciences, University College London, London School of Hygiene and Tropical Medicine
  • Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. (2021) Uyoga, Sophie, Adetifa, Ifedayo M.O., Otiende, Mark, Gitonga, John N., Mugo, Daisy, Nyagwange, James, Karanja, Henry Kibe, Tuju, James, Makale, Johnstone, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Chege, Evelynn, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette I., Warimwe, George M., Agweyu, Ambrose, Scott, J. Anthony G.
  • COVID-19 vaccine development pipeline. (2020) Vaccine Centre
  • Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. (2023) Van Zandvoort, Kevin, Checchi, Francesco
  • Changing Worlds (US): Psychological responses to the climate crisis in young people and their agency to build the world they hope to see. (2022) Vercammen, Ans, Lawrance, Emma, Wray, Brittany
  • UK prevalence of risk factors for severe COVID-19 disease, by age and region: point prevalence estimates in 2019 and 2014, using electronic health records. (2020) Walker, Jemma, Grint, Daniel, Strongman, Helen, Eggo, Rosalind M., Peppa, Maria, Minassian, Caroline, Mansfield, Kathryn E., Rentsch, Christopher, Douglas, Ian J., Mathur, Rohini, Wong, Angel, Quint, Jennifer K., Andrews, Nick, Lopez-bernal, James, Scott, Anthony, Ramsay, Mary, Smeeth, Liam, McDonald, Helen folder_zip
  • reichlab/covidHubUtils. (2021) Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian
  • Social Contact Rates (SOCRATES) Data Tool. (2020) Willem, Lander, Hoang, Van Thang, Funk, Sebastian, Coletti, Pietro, Beutels, Philippe, Hens, Niel
  • opensafely/risk-factors-research. (2020) Williamson, Elizabeth, Walker, Alex J, Bhaskaran, Krishnan J, Bacon, Seb, Bates, Chris, Morton, Caroline E, Curtis, Helen J, Mehrkar, Amir, Evans, David, Inglesby, Peter, Cockburn, Jonathan, Mcdonald, Helen I, MacKenna, Brian, Tomlinson, Laurie, Douglas, Ian J, Rentsch, Christopher T, Mathur, Rohini, Wong, Angel, Grieve, Richard, Harrison, David, Forbes, Harriet, Schultze, Anna, Croker, Richard T, Parry, John, Hester, Frank, Harper, Sam, Perera, Rafael, Evans, Stephen, Smeeth, Liam, Goldacre, Ben
  • opensafely/anticoagulants-research. (2021) Wong, Angel, Bacon, Seb, Walker, Alex, Davy, Simon, Inglesby, Peter, MacKenna, Brian
  • Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread. (2021) Wu, Joseph T., Mei, Shujiang, Luo, Sihui, Leung, Kathy, Liu, Di, Lv, Qiuying, Liu, Jian, Li, Yuan, Prem, Kiesha, Jit, Mark, Weng, Jianping, Feng, Tiejian, Zheng, Xueying, Leung, Gabriel M.
  • lwyakob/COVIDquarantine. (2021) Yakob, Laith
  • lwyakob/COVIDsaturates. (2020) Yakob, Laith, Nightingale, Emily
  • Anaphylaxis events following COVID-19 antiviral and neutralising monoclonal antibody treatment for non-hospitalised patients. (2023) Zheng, Bang
  • opensafely/Paxlovid-and-sotrovimab. (2023) Zheng, Bang, lshbz1
  • Data supporting "Temporal trends of SARS-CoV-2 exposure in adolescents: a longitudinal pilot study nested in a Uganda birth cohort". (2025) Zirimenya, Ludoviko, Natukunda, Agnes, Nassuna, Jacent, Nkurunungi, Gyaviira, Elliott, Alison M., Webb, Emily description
  • covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022) actions-user, Sherratt, Katharine, Gruson, Hugo, Funk, Sebastian, Bracher, Johannes, BIOCOM-SC, Walraven, Robert, miraanto, h-veronika, Rodiah, Isti, gr3gr3, Kraus, David, hgurung-iem, epiforecasts-bot, Xu, Frost Tianjian, Heyder, Stefan, aniruddhadiga, Abbott, Sam, Sun, Tao, Mingio, Marco, Deuschel, Jannik, pmontman, janezz25, neele-itwm, Gibson, Graham, EpiGraph, Tarantino, Barbara, Karlen, Dean, Bhatia, Sangeeta, borjarv