Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). Continent Summary Reproduction Number (R) Based on Reported Cases. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/F9HVNL

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/0NYGXE

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/UIM3MB

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/NALGQJ

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/2CNKZJ

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/GI8EVP

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/17XS9I

Abbott, S and Bracher, J (2021). epiforecasts/forecast.vocs. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5559016

Abbott, S and Funk, S (2021). epiforecasts/covid19.sgene.utla.rt. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5236661

Abbott, S, Hickson, J, Badr, HS, Funk, S, Monticone, P, Ellis, P, Munday, JD, Allen, J, Pearson, CAB, DeWitt, M, Bosse, N and Meakin, S (2021). epiforecasts/EpiNow2. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3957489

Abbott, S and Meakin, S (2021). epiforecasts/covid19.nhs.data: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4447465

Abbott, S and Monticone, P (2021). epiforecasts/epinowcast. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5637165

Abbott, S, Sherratt, K and Funk, S (2021). Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5799135

Abotsi, RE, Nicol, MP, McHugh, G, Simms, V, Rehman, AM, Barthus, C, Ngwira, LG, Kwambana-Adams, B, Heyderman, RS, Odland, JØ, Ferrand, RA and Dube, FS (2021). Data from: The impact of long-term azithromycin on antibiotic resistance in HIV-associated chronic lung disease. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.5dv41ns71

Adetifa, IMO, Uyoga, S, Gitonga, JN, Mugo, D, Otiende, M, Nyagwange, J, Karanja, HK, Tuju, J, Wanjiku, P, Aman, R, Mwangangi, M, Amoth, P, Kasera, K, Ng’ang’a, W, Rombo, C, Yegon, C, Kithi, K, Odhiambo, E, Rotich, T, Orgut, I, Kihara, S, Bottomley, C, Kagucia, EW, Gallagher, KE, Etyang, A, Voller, S, Lambe, T, Wright, D, Barasa, E, Tsofa, B, Bejon, P, Ochola-Oyier, LI, Agweyu, A, Scott, JAG and Warimwe, GM (2021). Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/FQUNVD

Alexander, N, Carabali, M and Lim, JK (2021). Data for: "Estimating force of infection from serologic surveys with imperfect tests". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002252.

Alobo, M, Mgone, C, Wesonga, CA, Lawn, JE, Ezeaka, C, Okong, P, Temmerman, M, Molineux, E, Malata, A, Wazny, K and Kariuki, T (2021). Research priorities in maternal and neonatal health in Africa: results using the Child Health and Nutrition Research Initiative method involving over 900 experts across the continent. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/38GTU

Assefa, N, Demissie, L, Teklemarriam, Z, Oundo, JO, Madrid, L, Dessie, Y and Scott, JAG (2021). Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/XIWCXN

Auzenbergs, M, Fountain, H, Macklin, G, Lyons, H and O'reilly, KM (2021). mauzenbergs/polio_vdpv. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4769689

Ayieko, P, Hashim, R, Grosskurth, H and Kapiga, S (2021). Hand hygiene intervention to optimise soil transmitted helminths infection control among primary school children: endline survey data from a cluster randomised trial. [Data Collection]. Mendeley Data. https://doi.org/10.17632/9wgnn35jcr.1

Balogun, M, Banke-Thomas, A, Sekoni, A, Boateng, GO, Yesufu, V, Wright, O, Ubani, O, Abayomi, A, Afolabi, BB and Ogunsola, F (2021). Dataset of 1241 clients of RMNCH services during the COVID-19 outbreak in Lagos. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0251382.s002

Bell, S, Clarke, R, Mounier-Jack, S, Paterson, P, Ismail, S and Ojo-Aromokudu, O (2021). COVID-19 vaccination beliefs, attitudes, and behaviours among health and social care workers in the UK: Survey dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002525.

Blassel, L, Tostevin, A, Villabona-arenas, CJ, Peeters, M, Hue, S and Gascuel, O (2021). Archive of figure generating data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1008873.s007

Bottomley, C (2021). christian-bottomley/mixture_model_sarscov2. [Data Collection]. Github. https://github.com/christian-bottomley/mixture_model_sarscov2

Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE (2021). Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002018.

Bracher, J, Wolffram, D, Deuschel, J, Görgen, K, Ketterer, J, Ullrich, A, Abbott, S, Barbarossa, M, Bertsimas, D, Bhatia, S, Bodych, M, Bosse, NI, Burgard, J, Castro, L, Fairchild, G, Fuhrmann, J, Funk, S, Gogolewski, K, Gu, Q, Heyder, S, Hotz, T, Kheifetz, Y, Kirsten, H, Krueger, T, Krymova, E, Li, M, Meinke, J, Michaud, I, Niedzielewski, K, Ożański, T, Rakowski, F, Scholz, M, Soni, S, Srivastava, A, Zieliński, J, Zou, D, Gneiting, T and Schienle, M (2021). KITmetricslab/covid19-forecast-hub-de. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4439666

Brand, S and Ojal, J (2021). ojal/KenyaSerology. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4705243

Chapman, LAC, Barnard, RC, Russell, TW, Abbott, S, Van Zandvoort, K, Davies, NG and Kucharski, AJ (2021). Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5772162

Chapman, LAC (2021). LloydChapman/COVID_homeless_modelling. [Data Collection]. Github. https://github.com/LloydChapman/COVID_homeless_modelling

Chapman, LAC, Shukla, P and Lo, NC (2021). Comparison of COVID-19 vaccine prioritization strategies in the United States. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4516525

Checchi, F, Testa, A, Gimma, A, Koum-Besson, E and Warsame, A (2021). francescochecchi/mortality_small_area_estimation. [Data Collection]. Github. https://github.com/francescochecchi/mortality_small_area_estimation

Clements, AJ and Fadai, NT (2021). nfadai/Clements2021. [Data Collection]. GitHub. https://github.com/nfadai/Clements2021

Colón-González, FJ, Soares Bastos, L, Hofmann, B, Hopkin, A, Harpham, Q, Crocker, T, Amato, R, Ferrario, I, Moschini, F, James, S, Malde, S, Ainscoe, E, Sinh Nam, V, Quang Tan, D, Duc Khoa, N, Harrison, M, Tsarouchi, G, Lumbroso, D, Brady, OJ and Lowe, R (2021). R code for the paper "Probabilistic seasonal dengue forecasting in Vietnam: A modelling study using superensembles". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4740093

Colón-González, FJ, Sewe, MO, Tompkins, AM, Sjödin, H, Casallas, A, Rocklöv, J, Caminade, C and Lowe, R (2021). Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/HPAEY

Cox, S and Faguer, B (2021). Patterns of non-communicable comorbidities at start of tuberculosis treatment in three regions of the Philippines: St-ATT cohort baseline data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002476.

Cox, S and Faguer, B (2021). St-ATT: The Starting Anti-Tuberculosis Treatment Cohort in the Philippines. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002313.

Damilola R. Oresegun, Peter Thorpe, Benavente, E, Campino, S, Fauzi Muh, Moon, RW, Clark, T and Cox-Singh, J (2021). Getting close to nature – Plasmodium knowlesi reference genome sequences from contemporary clinical isolates. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5598263

Davidson, J, Warren-Gash, C, Banerjee, A, McDonald, H and Smeeth, L (2021). Codelists for: "The effect of influenza vaccine on acute cardiovascular events in people with varying cardiovascular risk: a self-controlled case-series study in England, 2008-2019". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002675.

Davidson, J, Warren-Gash, C and McDonald, H (2021). Clinical codelist - CPRD Gold - solid organ transplant. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002709.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - aplastic anaemia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002681.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - bone marrow or stem cell transplant. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002683.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - chemotherapy and radiotherapy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002684.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Therapy codelist - CPRD Gold - oral steroids. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002702.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A, Gayle, A, Strongman, H, Evans, D, Clay, S, Forbes, H, Mansfield, KE, Carreira, H, Bhaskaran, K, Bhate, K, Smeeth, L, Dedman, D, Mathur, R, Cadogan, S and LSHTM EHR team (2021). Codelists for: "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002269.

Davies, NG (2021). CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5105920

Davies, NG (2021). nicholasdavies/amr-competition-diversity: Full release for publication. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5116443

Davies, NG, Abbott, S, Barnard, RC, Jarvis, CI, Kucharski, AJ, Munday, J, Pearson, CAB, Russell, TW, Tully, DC, Washburne, AD, Wenseleers, T, Gimma, A, Waites, W, Wong, KL, van Zandvoort, K, Silverman, JD, Diaz-Ordaz, K, Keogh, R, Eggo, RM, Funk, S, Jit, M, Atkins, KE and Edmunds, WJ (2021). Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4549674

Davies, NG, Abbott, S, Barnard, RC, Jarvis, CI, Kucharski, AJ, Munday, J, Pearson, CAB, Russell, TW, Tully, DC, Washburne, AD, Wenseleers, T, Gimma, A, Waites, W, Wong, KL, van Zandvoort, K, Silverman, JD, Diaz-Ordaz, K, Keogh, R, Eggo, RM, Funk, S, Jit, M, Atkins, KE and Edmunds, WJ (2021). Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4562961

De figueiredo, A (2021). Impact of vaccine passports on inclination to accept COVID-19 vaccinations in the UK. [Data Collection]. OSF. https://osf.io/xh9p7/

Diamond, C, Gong, H, Sun, FY, Liu, Y, Quilty, B, Jit, M, Yang, J, Yu, H, Edmunds, WJ and Baguelin, M (2021). EIDECDIA/China_influenza_seasonality. [Data Collection]. Github. https://github.com/EIDECDIA/China_influenza_seasonality

Drake, C, Hernandez, A, Liu, Y, Schwartz, AH and Sundaram, M (2021). yangclaraliu/armslist_scraping. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5185707

Endo, A, Uchida, M, Hayashi, N, Liu, Y, Atkins, KE, Kucharski, AJ and Funk, S (2021). akira-endo/schooldynamics_FluMatsumoto14-15: Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5604502

Enria, L, Waterlow, N, Rogers, N, Brindle, H, Lal, S, Eggo, RM, Lees, S and Roberts, C (2021). Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002015.

Evans, B and Jombart, T (2021). Analysis of changes in worldwide routine immunisation coverage in 2020. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5746754

Eyre, MT, Burns, R, Kirkby, V, Smith, C, Denaxas, S, Nguyen, V, Hayward, A, Shallcross, L, Fragaszy, E and Aldridge, RW (2021). Impact of baseline cases of cough and fever on UK COVID-19 diagnostic testing rates: estimates from the Bug Watch community cohort study - Supplementary material, code and data. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/5J6DY

Fielding, K (2021). Adjunctive host-directed therapies for pulmonary tuberculosis: data from a prospective, open-label, phase 2, randomised controlled trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002277.

Fielding, K (2021). Data set for describing resistance and identifying risk factors for resistance to Mycobacterium tuberculosis, among highly TB exposed gold miners in South Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002424.

Fischer, N, Darmstadt, GL, Shahunja, K, Crowther, JM, Kendall, L, Gibson, RA, Ahmed, T and Relman, DA (2021). Dataset and R code for article "Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: a randomised, controlled study". [Data Collection]. Stanford Digital Repository. https://purl.stanford.edu/dk954yp6586

Flaherty, KE, Grembi, JA, Ramachandran, VV, Haque, F, Khatun, S, Rahman, M, Maples, S, Becker, TK, Spormann, AM, Schoolnik, GK, Hryckowian, AJ and Nelson, EJ (2021). High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. S1 Dataset. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0257708.s004

Fu, H and Abbas, KM (2021). lshtm-vimc/dynamice. [Data Collection]. Github. https://github.com/lshtm-vimc/dynamice

Fujisawa, K, Silcott-Niles, C, Simonson, P, Lamattina, D, Humeres, CA, Bhattacharyya, T, Mertens, P, Thunissen, C, O’Rourke, V, Pańczuk, M, Whitworth, JA, Salomón, OD and Miles, MA (2021). Consolidated results of dogs in the 2018 and 2019 studies. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009552.s001

Gibb, R and Mollentze, N (2021). rorygibb/pathogen_discovery: Viral discovery Biology Letters code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5714490

Gibbs, H (2021). cmmid/uk_movement_communities_covid. [Data Collection]. Github. https://github.com/cmmid/uk_movement_communities_covid

Gibbs, H (2021). hamishgibbs/ghana_rt_npi_mobility. [Data Collection]. Github. https://github.com/hamishgibbs/ghana_rt_npi_mobility

Gibbs, H, Jarvis, CI and Eggo, RM (2021). uk_tier_data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4421648

Gibbs, H, Waterlow, NR, Cheshire, J, Danon, L, Liu, Y, Grundy, C, Kucharski, AJ and Eggo, RM (2021). Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5013619

Gimma, A (2021). amygimma/comix_uk_summary_analysis. [Data Collection]. Github. https://github.com/amygimma/comix_uk_summary_analysis

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Austria). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4775972

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (France). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5040870

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Italy). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5041112

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Poland). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5041128

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Portugal). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5041140

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Spain). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5040839

Gimma, A, Wong, KL, Van Xandvoort, K, Jarvis, CI and Edmunds, WJ (2021). CoMix social contact data (UK). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4905745

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Denmark). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5040530

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Greece). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.5137218

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Slovenia). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.5137239

Glynn, JR, Fielding, K, Mzembe, T, Sichali, L, Banda, L, Mclean, E, Kanjala, C, Crampin, AC, Ponnighaus, J, Warndorff, D and Fine, P (2021). Data for: “BCG revaccination in Malawi: 30-year follow-up of a large, randomised, double-blind placebo-controlled trial”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002443.

Goncalves, B (2021). Data for: "Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002118.

Grant-McAuley, W, Klock, E, Laeyendecker, O, Piwowar-Manning, E, Wilson, E, Clarke, W, Breaud, A, Moore, A, Ayles, H, Kosloff, B, Shanaube, K, Bock, P, Mandla, N, van Deventer, A, Fidler, S, Donnell, D, Hayes, R and Eshleman, SH (2021). Evaluation of multi-assay algorithms for identifying individuals with recent HIV infection: HPTN 071 (PopART). Minimum dataset, seroconverters. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0258644.s004

Harris, RC, Quaife, M, Weerasuriya, CK, Gomez, GB, Sumner, T, Bozzani, F and White, RG (2021). lshtm-tbmg/natcomms-m72sa: Nat Comms - code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5793302

Hesselbarth, M, actions-user, Sciaini, M, Hereñú, D, Gruson, H and Etherington, T (2021). r-spatialecology/shar. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5761582

Jarvis, C (2021). jarvisc1/comix_uk_covid_restrictions. [Data Collection]. Github. https://github.com/jarvisc1/comix_uk_covid_restrictions

Jarvis, CI and Jombart, T (2021). jarvisc1/2020-reporting. [Data Collection]. Github. https://github.com/jarvisc1/2020-reporting

Johnson, C, Kumwenda, M, Meghji, J, Choko, AT, Phiri, M, Hatzold, K, Baggaley, R, Taegtmeyer, M, Terris-Prestholt, F, Desmond, N and Corbett, EL (2021). Additional file 1 of ‘Too old to test?’: A life course approach to HIV-related risk and self-testing among midlife-older adults in Malawi. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14369899.v1

Jung, S, Endo, A, Kinoshita, R and Nishiura, H (2021). SungmokJung/Projection_Japan_COVID19 v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4576936

Kansiime, S (2021). Blood pressure levels among children in rural Uganda: results from 1,913 children in a general population survey. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002387.

Keating, P, Murray, J, Schenkel, K, Merson, L and Seale, A (2021). Support files for: "Electronic data collection, management and analysis tools used for outbreak response in low- and middle-income countries: a systematic review and stakeholder survey". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002527.

Knight, G (2021). gwenknight/hai_first_wave. [Data Collection]. Github. https://github.com/gwenknight/hai_first_wave

Koltai, M (2021). Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5534768

Koltai, M (2021). mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5534762

Krauer, F and Schmid, BV (2021). Datasets and code for "Mapping the plague through natural language processing". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4724015

Kucharski, AJ (2021). adamkucharski/covid-import-model. [Data Collection]. Github. https://github.com/adamkucharski/covid-import-model

Leclerc, QJ (2021). qleclerc/COVID_bed_occupancy. [Data Collection]. Github. https://github.com/qleclerc/COVID_bed_occupancy

Lee, SA (2021). Data and R code to accompany 'Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4706865

Lee, SA, Economou, T, de Castro Catão, R, Barcellos, C and Lowe, R (2021). Data and R code to accompany 'The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil' (version 1.0.0). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5710715

Limbada, M, Ayles, H and Macleod, D (2021). A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002116.

Lin, LY (2021). liang-yu12/vd_covid. [Data Collection]. Github. https://github.com/liang-yu12/vd_covid

Lindsay, S, Carrasco-Tenezaca, M, Jawara, M, Bradley, J, D'Alessandro, U, Jeffries, D, Pinder, M and Knudsen, J (2021). Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14483475.v1

Lindsey, BB, Villabona-Arenas, CJ, Atkins, KE and Campbell, F (2021). Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5769865

Liu, Y, Sandmann, FG, Barnard, RC, Pearson, CA, CMMID Working-19 Working Group, Pastore, R, Pebody, R, Flasche, S and Jit, M (2021). Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4964148

Liu, Y, Sandmann, F, Barnard, RC, Pearson, CAB, LSHTM CMMID COVID-19 Working Group, Davies, NG and Jit, M (2021). Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. [Data Collection]. ShinyApps.io. https://yangcliu.shinyapps.io/demo/

Lovell-Read, FA, Funk, S, Obolski, U, Donnelly, CA and Thompson, RN (2021). Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". [Data Collection]. The Royal Society. https://doi.org/10.6084/m9.figshare.c.5416023.v1

Lowe, R (2021). Data and R code to accompany 'Combined effects of hydrometeorological hazards and urbanisation on dengue risk in Brazil: a spatiotemporal modelling study'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4632204

Mayerová, D and Abbas, KM (2021). d-mayerova/Vaccine_confidence_Albania. [Data Collection]. Github. https://github.com/d-mayerova/Vaccine_confidence_Albania

Mbivnjo, EL, Lynch, M and Huws, JC (2021). Supplementary material for the article, "Measles Outbreak Investigation Process in Low- and Middle-Income Countries: A Systematic Review of the Methods and Costs of Contact Tracing". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14247431.v3

McCreesh, N (2021). NickyMcC/WithinClinics. [Data Collection]. Github. https://github.com/NickyMcC/WithinClinics

Mccreesh, N (2021). NickyMcC/CasualAgeMixing. [Data Collection]. Github. https://github.com/NickyMcC/CasualAgeMixing

Mccreesh, N, Dlamini, V, Edwards, A, Olivier, S, Dayi, N, Dikgale, K, Nxumalo, S, Dreyer, J, Baisley, K, Siedner, MJ, White, RG, Herbst, K, Grant, AD and Harling, G (2021). Social contact information from PIPSA residents in uMkhanyakude before and during the Covid-19 pandemic – data from the Umoya Omuhle and Covid Social Contacts studies. [Data Collection]. AHRI Data Repository. https://doi.org/10.23664/AHRI.UOANDCSC.DATASET.2021

Mee, P, Alexander, N and Colón-González, FJ (2021). Paul-Mee/clic_brazil. [Data Collection]. Github. https://github.com/Paul-Mee/clic_brazil

Mendelsohn, SC, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung, S, Borate, B, Hadley, K, Hikuam, C, Musvosvi, M, Bilek, N, Erasmus, M, Jaxa, L, Raphela, R, Nombida, O, Kaskar, M, Sumner, T, White, RG, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G, Scriba, TJ and Hatherill, M (2021). Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.14176484.v1

Milligan, P (2021). Effectiveness of seasonal malaria chemoprevention at scale in west and central Africa: an observational study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002136.

Moodley, B, Chinorumba, A, Hamman, C, Matamba, A, Sikaala, CH, Kleinschmidt, I and Frean, J (2021). Additional file 5 of Improving the quality of malaria diagnosis in southern Africa through the development of a regional malaria slide bank. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16590714.v1

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Impact of the DREAMS interventions on educational attainment among adolescent girls and young women: Causal analysis of a prospective cohort in urban Kenya. Analytical datasets. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0255165.s012

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Number and proportions of AGYW aged 15–22 years retained in the study vs those lost to follow up at endline (2019), by AGYW characteristics. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0255165.s008

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Number of interventions accessed by age group, schooling status at baseline, and invitation to DREAMS. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0255165.s009

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Results from sensitivity analysis for associations between DREAMS and educational attainment. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0255165.s011

Munday, JD (2021). jdmunday/SchoolHouseholdNetworksCOVID: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4552421

Munday, JD and Jarvis, CI (2021). jdmunday/CoMix_schools_reopening. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5172069

Munday, JD, Jarvis, CI, Gimma, A, Wong, KL, van Zandvoort, K, Funk, S and Edmunds, WJ (2021). CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4677018

NatCen Social Research, London School of Hygiene & Tropical Medicine, Russell, M and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8179-1

Okere, N, Meta, J, Maokola, W, Martelli, G, van Praag, E, Naniche, D, Gomez, G, Pozniak, A, Rinke de Wit, T, de Klerk, J and Hermans, S (2021). Quality of care in a differentiated HIV service delivery intervention in Tanzania: A mixed methods study. [Data Collection]. Dryad. http://doi.org/10.5061/dryad.bcc2fqzbj

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Manda, SO, Sy, Z, Jackson, D and Doherty, T (2021). Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4428176

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Manda, SO, Sy, Z, Jackson, D and Doherty, T (2021). Supplementary Appendix 1c of "Toward a geography of community health workers in Niger: a geospatial analysis". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13536779.v5

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Sy, Z, Manda, S, Jackson, D and Doherty, T (2021). Supplementary Appendix 1b of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4428176

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Sy, Z, Manda, S, Jackson, D and Doherty, T (2021). Supplementary Appendix 1c of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". [Data Collection]. Zenodo.

Orindi, BO, Ziraba, A, Bruyneel, L, Floyd, S and Lesaffre, E (2021). Invariance of the WHO violence against women instrument among Kenyan adolescent girls and young women: Bayesian psychometric modeling. S1 Dataset. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0258651.s007

Otiende, M, Bauni, E, Nyaguara, A, Amadi, D, Nyundo, C, Tsory, E, Walumbe, D, Kinuthia, M, Kihuha, N, Kahindi, M, Nyutu, G, Moisi, J, Deribew, A, Agweyu, A, Marsh, K, Tsofa, B, Bejon, P, Bottomley, C, Williams, TN and Scott, JAG (2021). Replication Data for: Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/DDX7OK

Ouansafi, I (2021). Friendship Bench problem-solving therapy and its impact on adherence to ART among young people – Interview transcripts. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002002.

Ouansafi, I, Chibanda, D, Munetsi, E and Simms, V (2021). Interview topic guide for: "Impact of Friendship Bench problem-solving therapy on adherence to ART in young people living with HIV in Zimbabwe". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0250074.s001

O’Hara, G, Mokaya, J, Hau, J, Downs, L, Karabarinde, A, Asiki, G, McNaughton, A, Seeley, J, Matthews, P and Newton, R (2021). Liver function tests and fibrosis scores in a rural population in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8292194.v3

Palmer, J, Sherratt, K, Martin-Nielsen, R, Bevan, J, Gibbs, H, CMMID COVID-19 Working Group, Funk, S and Abbott, S (2021). covidregionaldata: Subnational data for COVID-19 epidemiology. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3957539

Pavelka, M, van Zandvoort, K, Abbott, S, Sherratt, K, Majdan, M, Jarcuska, P, Krajci, M, Flasche, S and Funk, S (2021). Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4570938

Pearson, CAB, Bozzani, F, Procter, SR, Davies, NG, Huda, M, Jensen, HT, Keogh-Brown, M, Khalid, M, Sweeney, S, Torres-Rueda, S, Eggo, RM, Vassall, A and Jit, M (2021). Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.5070957

Pearson, CAB (2021). cmmid/covidTestVac. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4725814

Pearson, CAB, Russell, TW and Kucharski, AJ (2021). cmmid/SA2UK. [Data Collection]. Github. https://github.com/cmmid/SA2UK

Pollington, TM, Tildesley, MJ, Hollingsworth, TD and Chapman, LAC (2021). t-pollington/developments_tau_statistic. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4906403

Pray, IW, Pizzitutti, F, Bonnet, G, Gonzales-Gustavson, E, Wakeland, W, Pan, WK, Lambert, WE, Gonzalez, AE, Garcia, HH and O’Neal, SE (2021). Data file including CystiAgent simulation results, observed results from the Ring Strategy Trial, and all intervention settings for each village evaluated (n = 21 villages). [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009885.s002

Prem, K (2021). kieshaprem/nsum: Release of NSUM codes version 1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4889457

Prem, K (2021). kieshaprem/synthetic-contact-matrices. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4889499

Pung, R (2021). rachaelpung/serial_interval_covid_b.1.617.2. [Data Collection]. Github. https://github.com/rachaelpung/serial_interval_covid_b.1.617.2

Quilty, B (2021). cmmid/covid_quar_test_import_risk. [Data Collection]. Github. https://github.com/cmmid/covid_quar_test_import_risk

Quilty, B (2021). cmmid/quar_test_contact_tracing. [Data Collection]. Github. https://github.com/cmmid/quar_test_contact_tracing

Quilty, BJ, Hellewell, J, Clifford, S and CMMID COVID-19 working group (2021). R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002074.

Randera-Rees, S, Safari, WC, Gareta, D, Herbst, K, Baisley, K and Grant, AD (2021). Clinic attendance by sex and HIV status in rural South Africa. [Data Collection]. Africa Health Research Institute (AHRI). https://doi.org/10.23664/AHRI.CLINIC.VISITS.CODE.2021

Rasoanaivo, TF, Bourner, J, Randriamparany, RN, Gamana, TM, Andrianaivoarimanana, V, Raherivelo, MH, Randriamampionona, H, Rajerison, M, Raberahona, M, Salam, AP, Edwards, T, Olliaro, PL and Randremanana, RV (2021). Data for: "The impact of COVID-19 on clinical research for Neglected Tropical Diseases (NTDs): A case study of bubonic plague". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010064.s001

Rees, E (2021). erees/seasonalHCoV. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4618261

Rishard, M, Fahmy, FF, Senanayake, H, Ranaweera, AKP, Armocida, B, Mariani, I and Lazzerini, M (2021). Correlation among experience of person-centered maternity care, provision of care and women’s satisfaction: Cross sectional study in Colombo, Sri Lanka. S1 File. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0249265.s009

Robert, A, Funk, S, Kucharski, AJ and Jombart, T (2021). o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=o2geosocial

Roberts, C, Rogers, N, Waterlow, N, Brindle, H, Enria, L and Lees, S (2021). Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002091.

Robinson, A, Reis de Oliveira Gomes, L, Abdurahman, OS, Alemayehu, W, Shuka, G, Melese, E, Guye, M, Legesse, D, Elias, E, Temam, K, Korso, HK, Muluadam, AA, Virginia, S, Lambert, S, Walker, SL, Habtamu, E, Solomon, AS, Last, AR, Macleod, D, Burton, MJ and Logan, JG (2021). Primary and secondary measurements collected when trialling use of insecticide-treated scarves to protect against Musca sorbens. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002423.

Rosello, A, Abbott, S and Barnard, RC (2021). rmjlros/COVID19_care_home_NPIs. [Data Collection]. Github. https://github.com/rmjlros/COVID19_care_home_NPIs

Russell, M, NatCen Social Research, London School of Hygiene & Tropical Medicine and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8178-1

Safari, W and Baisley, K (2021). Clinic attendance by sex and HIV status in rural South Africa - Data and Code. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002130.

Sanya, R and Webb, E (2021). Data supporting "Profiles of inflammation in rural and urban Uganda". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002459.

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

Sera, F, Abbott, S and Roye, D (2021). fsera/COVIDWeather. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.5215841

Serpa Pimentel, Ad, Mshana, G, Aloyce, D, Peter, E, Mchome, Z, Malibwa, D, Dwarumpudi, A, Kapiga, S and Stöckl, H (2021). Supplemental material for Women’s understanding of economic abuse in North-Western Tanzania. [Data Collection]. SAGE Journals. https://doi.org/10.25384/SAGE.16590165.v1

Shaikh, N, McCreesh, N and Deol, A (2021). Data for: "Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002427.

Shulman, CE, Dorman, EK, Cutts, F, Kawuondo, K, Bulmer, JN, Peshu, N and Marsh, K (2021). Replication Data for: Malaria in pregnancy: adverse effects on haemoglobin levels and birthweight in primigravidae and multigravidae. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/HP1JYJ

Simms, V (2021). Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: data collection documents. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002312.

Simms, V and Chinoda, S (2021). Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: Baseline and Endline questionnaires. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002142.

Simms, V (2021). Friendship Bench trial: lay worker training in problem-solving therapy to reduce symptoms of common mental disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001515.

Sturt, A, Bustinduy, A and Webb, E (2021). Data for: "Cervicovaginal Immune Activation in Zambian Women with Female Genital Schistosomiasis". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001926.

Sumner, T (2021). tomsumner/CORTIS_HR_CE. [Data Collection]. Github. https://github.com/tomsumner/CORTIS_HR_CE

Tadesse, FG, Ashine, T, Teka, H, Esayas, E, Messenger, LA, Chali, W, Meerstein-Kessel, L, Walker, T, Wolde Behaksra, S, Lanke, K, Heutink, R, Jeffries, CL, Mekonnen, DA, Hailemeskel, E, Tebeje, SK, Tafesse, T, Gashaw, A, Tsegaye, T, Emiru, T, Kigozi, S, Bogale, EA, Yohannes, G, Kedir, S, Shumie, G, Sabir, SA, Mumba, P, Dengela, D, Kolaczinski, JH, Wilson, A, Churcher, TS, Chibsa, S, Murphy, M, Balkew, M, Irish, S, Drakeley, C, Gadisa, E and Bousema, T (2021). Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.gf1vhhmnt

Teixeira, MG, Skalinski, LM, Paixao Cruz, ES, Costa, Maria da Conceição N., Barreto, FR, Campos, GS, Sardi, SI, Carvalho, RH, Natividade, M, Itaparica, M, Dias, JP, Trindade, SC, Teixeira, BP, Morato, V, Santana, EB, Goes, CB, Silva, Neuza Santos de Jesus, Santos, Carlos Antonio de Souza Teles, Rodrigues, LC and Whitworth, J (2021). Seroprevalence of Chikungunya virus and living conditions in Feira de Santana, Bahia-Brazil. S1 Database. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009289.s001

Tennant, WSD, Cardinale, E, Cêtre-Sossah, C, Moutroifi, Y, Le Godais, G, Colombi, D, Spencer, SEF, Tildesley, MJ, Keeling, MJ, Charafouddine, O, Colizza, V, Edmunds, WJ and Métras, R (2021). wtennant/rvf_comoros: Supporting data and code for 'Modelling the persistence and control of Rift Valley fever virus in a spatially heterogeneous landscape'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5234876

Uyoga, S, Adetifa, IM, Otiende, M, Gitonga, JN, Mugo, D, Nyagwange, J, Karanja, HK, Tuju, J, Makale, J, Aman, R, Mwangangi, M, Amoth, P, Kasera, K, Ng’ang’a, W, Chege, E, Yegon, C, Kithi, K, Odhiambo, E, Rotich, T, Orgut, I, Kihara, S, Bottomley, C, Kagucia, EW, Gallagher, KE, Etyang, A, Voller, S, Lambe, T, Wright, D, Barasa, E, Tsofa, B, Mwangangi, J, Bejon, P, Ochola-Oyier, LI, Warimwe, GM, Agweyu, A and Scott, JAG (2021). Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/3E1YSQ

Van Zandvoort, K, Bobe, MO, Hassan, AI, Abdi, MI, Ahmed, MS, Warsame, MY, Wais, MA, Diggle, E, Satzke, C, Mulholland, K, Egeh, MM, Hassan, MM, Hergeeye, MA, Eggo, RM, Checchi, F and Flasche, S (2021). Social contact data for IDPs in Somaliland (2019). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5226280

Wang, SY, Stark, A, Evan Ray, Bosse, N, Reich, NG, Sherratt, K, Shah, A, Wattanachit, N, Khoale1096, Huang, YD, Gerding, A, Gruson, H, Cramer, E, Shandross, L, Abbott, S and Funk, S (2021). reichlab/covidHubUtils. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5207939

Warren-Gash, C, Davidson, J, Mcdonald, H, Cadogan, S, Forbes, H, Strongman, H, Langan, S, Mansfield, KE, Smeeth, L, Muzambi, R, Shiekh, S and LSHTM EHR Team, . (2021). Codelists for "Herpes zoster and dementia risk: a population-based matched cohort study". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002672.

Waterlow, NR, Van Leeuwen, E, Davies, N, Flasche, S and Eggo, RM (2021). cmmid/coronavirus_immunity. [Data Collection]. Github. https://github.com/cmmid/coronavirus_immunity

Weckman, AM, Conroy, AL, Madanitsa, M, Gnaneswaran, B, McDonald, CR, Kalilani-Phiri, L, Chandna, J, Ali, D, Mwapasa, V, Khairallah, C, Thwai, KL, Meshnick, SR, Taylor, SM, ter Kuile, FO, Kain, KC and Gladstone, M (2021). Neurocognitive outcomes in Malawian children exposed to malaria during pregnancy: An observational birth cohort study. Anonymized dataset, wide format. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1003701.s001

Weiss, H and Bhat, B (2021). PRIDE 12 month outcome dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002147.

Woodd, S, Graham, W, Campbell, O, Mulokozi, A and Manzi, F (2021). Infection Surveillance by Telephone, Early Postpartum (I-STEP). [Data Collection]. Ifakara Health Institute, Ifakara, Tanzania. https://data.ihi.or.tz/index.php/catalog/179/

Wu, JT, Mei, S, Luo, S, Leung, K, Liu, D, Lv, Q, Liu, J, Li, Y, Prem, K, Jit, M, Weng, J, Feng, T, Zheng, X and Leung, GM (2021). Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16851696.v1