Items where faculty/department is "Dept of Infectious Disease Epidemiology (-2023)" and Year is 2020
LSHTM Organisational Structure (3751)
Faculty of Epidemiology and Population Health (2441)
Dept of Infectious Disease Epidemiology (-2023) (825)
Number of items: 147.
A
vaccine-impact/epi_covid. (2020)
Abbas, Kaja M.
seabbs/getTBinR. (2020)
Abbott, Sam; Bekker-Nielsen Dunbar, Maria; Smith, Arfon
Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Continent Summary Reproduction Number (R) Based on Reported Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National Reproduction Number (R) Based on Reported Cases. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National Reproduction Number (R) Estimates Based on Reported Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
epiforecasts/EpiSoon. (2020)
Abbott, Sam; Bosse, Nikos; DeWitt, Michael; Rau, Andrea; Chateigner, Aurelien; Mareschal, Sylvain; Hellewell, Joel
idmodelr: Infectious Disease Model Library and Utilities. (2020)
Abbott, Sam; Endo, Akira
Pathways to Low Fertility. (2020)
Abbott, Sam; Funk, Sebastian; Munday, James D.; Hellewell, Joel
Wuhan Seeding Vs Transmission. (2020)
Abbott, Sam; Funk, Sebastian; Munday, James D.; Hellewell, Joel
epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020)
Abbott, Sam; Funk, Sebastian; Munday, James D.; Hellewell, Joel
seabbs/CovidInterventionReview: CC0 license. (2020)
Abbott, Sam; Gaythorpe, Katy A.M.; Imai, Natsuko; Liu, Yang
epiforecasts/covid: Submission release. (2020)
Abbott, Sam; Sherratt, Katharine; Funk, Sebastian; Hellewell, Joel
epiforecasts/NCoVUtils. (2020)
Abbott, Sam; Sherratt, Katharine; Gibbs, Hamish; Finger, Flavio; Campbell, Paul; Hellewell, Joel; Barks, Patrick; Meakin, Sophie; Lee, Haze
Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020)
Aldridge, Robert W.; Lewer, Dan; Beale, Sarah; Johnson, Anne M.; Zambon, Maria; Hayward, Andrew C.; Fragaszy, Ellen
B
Household Transmission of Seasonal Coronavirus Infections: Results from the Flu Watch cohort study. (2020)
Beale, Sarah; Lewer, Dan; Aldridge, Robert W.; Johnson, Anne M.; Zambon, Maria; Hayward, Andrew; Fragaszy, Ellen
Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. (2020)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline
Data for: "Boosting understanding of Lassa Fever virus epidemiology: field testing a novel assay to identify past Lassa Fever virus infection in blood and oral fluids of survivors and unexposed controls in Sierra Leone". (2020)
Bower, Hilary; Akpogheneta, Onome; Kanneh, Zainab; Jusu, Brima; Kanneh, Lansana; Alhasan, Foday; Gbakie, Michael; Shieffelin, John
description
C
Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Dengue and microcephaly cases in Brazil used in Carvalho et al. (2020)
Carvalho, Marilia Sá; Freitas, Laís Picinini; Cruz, Oswaldo Gonçalves; Brasil, Patrícia; Bastos, Leonardo Soares
AZ-SMC Trial - School child parasitaemia dataset. (2020)
Chandramohan, Daniel; Dicko, Alassane; Zongo, Issaka; Sagara, Issaka; Cairns, Matthew; Kuepfer, Irene; Diarra, Modibo; Barry, Amadou; Tapily, Amadou; Nikiema, Frederic; Yerbanga, Serge; Coumare, Samba; Thera, Ismaila; Traore, Abdourhamane; Milligan, Paul; Tinto, Halidou; Doumbo, Ogobara; Ogobara, Jean-Bosco; Greenwood, Brian
description
AZ-SMC Trial - In vivo treatment efficacy dataset. (2020)
Chandramohan, Daniel; Dicko, Alassane; Zongo, Issaka; Sagara, Issaka; Cairns, Matthew; Kuepfer, Irene; Diarra, Modibo; Barry, Amadou; Tapily, Amadou; Nikiema, Frederic; Yerbanga, Serge; Coumare, Samba; Thera, Ismaila; Traore, Abdourhamane; Milligan, Paul; Tinto, Halidou; Doumbo, Ogobara; Ouedraogo, Jean-Bosco
description
AZ-SMC Trial - Cross-sectional dataset. (2020)
Chandramohan, Daniel; Dicko, Alassane; Zongo, Issaka; Sagara, Issaka; Cairns, Matthew; Kuepfer, Irene; Diarra, Modibo; Barry, Amadou; Tapily, Amadou; Nikiema, Frederic; Yerbanga, Serge; Coumare, Samba; Thera, Ismaila; Traore, Abdourhamane; Milligan, Paul; Tinto, Halidou; Doumbo, Ogobara; Ouedraogo, Jean-Bosco; Greenwood, Brian
description
AZ-SMC Trial - Drug administration dataset. (2020)
Chandramohan, Daniel; Dicko, Alassane; Zongo, Issaka; Sagara, Issaka; Cairns, Matthew; Kuepfer, Irene; Diarra, Modibo; Barry, Amadou; Tapily, Amadou; Nikiema, Frederic; Yerbanga, Serge; Coumare, Samba; Thera, Ismaila; Traore, Abdourhamane; Milligan, Paul; Tinto, Halidou; Doumbo, Ogobara; Ouedraogo, Jean-Bosco; Greenwood, Brian
description
AZ-SMC Trial - Person-Time dataset. (2020)
Chandramohan, Daniel; Dicko, Alassane; Zongo, Issaka; Sagara, Issaka; Cairns, Matthew; Kuepfer, Irene; Diarra, Modibo; Barry, Amadou; Tapily, Amadou; Nikiema, Frederic; Yerbanga, Serge; Coumare, Samba; Thera, Ismaila; Traore, Abdourhamane; Milligan, Paul; Tinto, Halidou; Doumbo, Ogobara; Ouedraogo, Jean-Bosco; Greenwood, Brian
description
AZ-SMC Trial - Weekly survey dataset. (2020)
Chandramohan, Daniel; Dicko, Alassane; Zongo, Issaka; Sagara, Issaka; Cairns, Matthew; Kuepfer, Irene; Diarra, Modibo; Barry, Amadou; Tapily, Amadou; Nikiema, Frederic; Yerbanga, Serge; Coumare, Samba; Thera, Ismaila; Traore, Abdourhamane; Milligan, Paul; Tinto, Halidou; Doumbo, Ogobara; Ouedraogo, Jean-Bosco; Greenwood, Brian
description
Data repository for AZ-SMC - a trial of seasonal malaria chemoprevention combined with azithromycin in African children. (2020)
Chandramohan, Daniel; Dicko, Alassane; Zongo, Issaka; Sagara, Issaka; Cairns, Matthew; Kuepfer, Irene; Diarra, Modibo; Barry, Amadou; Tapily, Amadou; Nikiema, Frederic; Yerbanga, Serge; Coumare, Samba; Thera, Ismaila; Traore, Abdourhamane; Milligan, Paul; Tinto, Halidou; Doumbo, Ogobara; Ouedraogo, Jean-Bosco; Greenwood, Brian
francescochecchi/aden_covid. (2020)
Checchi, Francesco
cmmid/pcr_test_trace. (2020)
Clifford, Samuel; Quilty, Billy
cmmid/travel_screening_strategies. (2020)
Clifford, Samuel; Quilty, Billy J.; Russell, Timothy W.; Liu, Yang; Chan, Yung-Wai Desmond; Pearson, Carl A. B.; Eggo, Rosalind M.; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; Edmunds, W. John
Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020)
Clifford, Samuel; Quilty, Billy; CMMID nCoV working group; Pearson, Carl; Flasche, Stefan; Eggo, Rosalind M.
ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020)
Colbourn, Tim; Waites, William; Manheim, David; Sturniolo, Simone; Kerr, Cliff C.; Panovska-Griffiths, Jasmina; Colbourn, Greg
CoMix social contact data (Belgium). (2020)
Coletti, Pietro; Wambua, James; Gimma, Amy; Willem, Lander; Vercruysse, Sarah; Vanhoutte, Bieke; Jarvis, Christopher I.; Van zandvoort, Kevin; Edmunds, W. John; Beutels, Philippe; Hens, Niel
Social contact data from CoMix survey (Belgium). (2020)
Coletti, Pietro; Wambua, James; Gimma, Amy; Willem, Lander; Vercruysse, Sarah; Vanhoutte, Bieke; Jarvis, Christopher I; Van Zandvoort, Kevin; Edmunds, John; Beutels, Philippe; Hens, Niel
Co-morbidities (malnutrition, diabetes, anaemia, HIV, hypertension) and quality of life in persons with tuberculosis in the Philippines. (2020)
Cox, Sharon E.; White, Laura V.; Faguer, Benjamin; Edwards, Tansy; Lee, Nathaniel; Solon, Juan; Ariyoshi, Koya; Castro, Mary Christine; Saludar, Naomi R.; Saito, Nobuo; Calapis, Rugaiya W
D
cmmid/covid-age. (2020)
Davies, Nicholas G.
nicholasdavies/covidm-alpha. (2020)
Davies, Nicholas G.
cmmid/covid-uk. (2020)
Davies, Nicholas G; Kucharski, Adam J.; Eggo, Rosalind M; Gimma, Amy; COVID-19 Working Group; Edmunds, W. John
Additional file 3 of Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. (2020)
Dawa, Jeanette; Emukule, Gideon O.; Barasa, Edwine; Widdowson, Marc Alain; Anzala, Omu; Van Leeuwen, Edwin; Baguelin, Marc; Chaves, Sandra S.; Eggo, Rosalind M.
Additional file 1 of Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. (2020)
Dawa, Jeanette; Emukule, Gideon O.; Barasa, Edwine; Widdowson, Marc Alain; Anzala, Omu; Van leeuwen, Edwin; Baguelin, Marc; Chaves, Sandra S.; Eggo, Rosalind M.
E
Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
akira-endo/COVID19_backwardtracing. (2020)
Endo, Akira; Kucharski, Adam J.
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK. (2020)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. (2020)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
description
F
Global Retinoblastoma Presentation 2017 data, on behalf of the Global Retinoblastoma Study Group. (2020)
Fabian, Ido Didi; Stacey, Andrew; Foster, Allen; Kivelä, Tero T.; Munier, Francis; Cassoux, Nathalie; Bowman, Richard
Data set for the comparison of the performance of QuantiFERON-TB Gold Plus with QuantiFERON-T Gold in-tube among highly TB exposed gold miners in South Africa. (2020)
Fielding, Katherine
description
StefanFlasche/Pneumo_Trans_Inf. (2020)
Flasche, Stefan
Wasting prevention CHNRI dataset. (2020)
Frison, Severine
sbfnk/rbi.helpers. (2020)
Funk, Sebastian; Finger, Flavio
G
RtD3. (2020)
Gibbs, Hamish; Abbott, Sam; Funk, Sebastian
UK Colocation Dashboard. (2020)
Gibbs, Hamish; CMMID nCov Working Group; Eggo, Rosalind M.; Grundy, Chris; Kucharski, Adam J.
Systematic analysis of infectious disease outcomes by age. (2020)
Glynn, Judith
grid_on
CLEAN study dataset. (2020)
Gon, Giorgia
grid_on
Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". (2020)
Gon, Giorgia
description
H
cmmid/ringbp. (2020)
Hellewell, Joel
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020)
Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos; Jarvis, Christopher; Russell, Timothy; Munday, James; Kucharski, Adam; Edmunds, W John; Funk, Sebastian; Eggo, Rosalind; Sun, Fiona; Flasche, Stefan; Quilty, Billy; Davies, Nicholas; Liu, Yang; Clifford, Samuel; Klepac, Petra; Jit, Mark; Diamond, Charlie; Gibbs, Hamish; Van Zandvoort, Kevin
timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020)
Hellewell, Joel; Lucas, Tim; Davis, Emma; Abbott, Sam; Gimma, Amy; Thompson, Robin
cmmid/pcr-profile. (2020)
Hellewell, Joel; Russell, Timothy W.; The SAFER Investigators and Field Study Team; The Crick COVID-19 Consortium; CMMID COVID-19 working group; Beale, Rupert; Kelly, Gavin; Houlihan, Catherine; Nastouli, Eleni; Kucharski, Adam J.
The Nairobi Early Childcare in Slums (NECS) Study. (2020)
Hughes, Robert; Kitsao-Wekulo, Patricia; Bhopal, Sunil; Kimani-Murage, Elizabeth; Hill, Zelee; Kirkwood, Betty
J
Inferring COVID-19 cases from recent death. (2020)
Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Van zandvoort, Kevin; Jarvis, Christopher
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Zandvoort, Kevin; Clifford, Samuel; Jarvis, Christopher; Russell, Timothy; Funk, Sebastian; Gibbs, Hamish; Eggo, Rosalind M.; Kucharski, Adam J.; CMMID COVID-19 Working Group; Edmunds, W. John
thibautjombart/covid19_bed_occupancy: Second major release. (2020)
Jombart, Thibaut; Clifford, Samuel; Pearson, Carl A. B. Pearson; Rees, Eleanor; Nightingale, Emily; Procter, Simon; Knight, Gwen
adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020)
Jombart, Thibaut; Kamvar, Zhian N.; Collins, Caitlin; Luštrik, Roman; Beugin, Marie-Pauline; Knaus, Brian J; Solymos, Peter; Mikryukov, Vladimir; Schliep, Klaus; Maié, Tiago; Morkovsky, Libor; Ahmed, Ismail; Cori, Anne; Calboli, Federico; Ewing, RJ; Michaud, Frédéric; DeCamp, Rebecca; Courtiol, Alexandre
projections: Project Future Case Incidence. (2020)
Jombart, Thibaut; Nouvellet, Pierre; Bhatia, Sangeeta; Kamvar, Zhian N.; Taylor, Tim; Ghozzi, Stephane
trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020)
Jombart, Thibaut; Schumacher, Dirk
K
Effect of repeat BCG on all-cause mortality: a double-blind randomised placebe-controlled trial in Malawi. (2020)
Kanjala, Chifundo; Glynn, Judith R.; Fine, Paul
skissler/haslemere. (2020)
Kissler, Stephen M.; Klepac, Petra; Tang, Maria; Conlan, Andrew J.K.; Gog, Julia R.
Contacts in context: large-scale setting-specific social mixing matrices from the BBC Pandemic project. (2020)
Klepac, Petra; Kucharski, Adam J; Conlan, Andrew JK; Kissler, Stephen; Tang, Maria; Fry, Hannah; Gog, Julia R
sysbio-curie/exact-stoch-log-mod. (2020)
Koltai, Mihály
Evaluating the informed push model intervention in Senegal. (2020)
Krug, Catarina; Lynch, Caroline; Cavallaro, Francesca; Wong, Kerry
folder_zip
Probability of a large 2019-nCoV outbreak following introduction of cases. (2020)
Kucharski, Adam J.; Russell, Timothy W.; Diamond, Charlie; CMMID nCoV working group; Funk, Sebastian; Eggo, Rosalind M.
L
Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. (2020)
Lawn, Joy E.; Waiswa, Peter; Waiswa, Joseph Akuze; Kwesiga, Doris; Blencowe, Hannah; Baschieri, Angela; Gordeev, Vladimir S.; EN-INDEPTH Collaborator Group
grid_on
COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020)
Lazarus, Jeffrey V.; Ratzan, Scott; Palayew, Adam; Billari, Francesco C.; Binagwaho, Agnes; Kimball, Spencer; Larson, Heidi J.; Melegaro, Alessia; Rabin, Kenneth; White, Trenton M.; El-Mohandes, Ayman
COVID19 settings of transmission - collected reports database. (2020)
Leclerc, Quentin J.; Fuller, Naomi M.; Knight, Lisa E.; Funk, Sebastian; Knight, Gwenan M.
qleclerc/nhs_pathways_report. (2020)
Leclerc, Quentin J.; Nightingale, Emily; Abbott, Sam
tsleng93/SocialBubble: Social Bubble (including density dependence). (2020)
Leng, Trystan; Flasche, Stefan
The impact of insecticide treated curtains on dengue virus transmission: A cluster randomized trial in Iquitos, Peru. (2020)
Lenhart, Audrey; Morrison, Amy C.; Paz-Soldan, Valerie A.; Forshey, Brett M.; Cordova-Lopez, Jhonny J.; Astete, Helvio; Elder, John P.; Sihuincha, Moises; Gotlieb, Esther E.; Halsey, Eric S.; Kochel, Tadeusz J.; Scott, Thomas W.; Alexander, Neal; McCall, Philip J.
Social contact data for Hong Kong. (2020)
Leung, Kathy; Jit, Mark; Lau, Eric H. Y.; Wu, Joseph T.
yangclaraliu/COVID19_NPIs_vs_Rt. (2020)
Liu, Yang
yangclaraliu/2019nCoV_proportion_asym: WOR Submission. (2020)
Liu, Yang; Funk, Sebastian; Flasche, Stefan
yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020)
Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; CMMID COVID-19 Working Group; Jit, Mark; Flasche, Stefan; Klepac, Petra
M
Clinical risk groups for Pneumococcal Polysaccharide Vaccine. (2020)
Mcdonald, Helen; Evans, Dai; Clay, Simon; Edelstein, Michael; Thomas, Sara
Immunisation risk group - Cardiac disease. (2020)
Mcdonald, Helen; Evans, Dai; Clay, Simon; Edelstein, Michael; Thomas, Sara
code
Immunisation risk group - Diabetes. (2020)
Mcdonald, Helen; Evans, Dai; Clay, Simon; Edelstein, Michael; Thomas, Sara
code
Immunisation risk group - chronic kidney disease. (2020)
Mcdonald, Helen; Evans, Dai; Clay, Simon; Edelstein, Michael; Thomas, Sara
description
Immunisation risk group - chronic respiratory disease without asthma. (2020)
Mcdonald, Helen; Evans, Dai; Clay, Simon; Edelstein, Michael; Thomas, Sara
description
Immunisation risk group - liver disease. (2020)
Mcdonald, Helen; Evans, Dai; Clay, Simon; Edelstein, Michael; Thomas, Sara
description
Data_Sheet_2_Natural Killer Cells Dampen the Pathogenic Features of Recall Responses to Influenza Infection. (2020)
Mooney, Jason P.; Qendro, Tedi; Keith, Marianne; Philbey, Adrian W.; Groves, Helen T.; Tregoning, John S.; Goodier, Martin R.; Riley, Eleanor M.
SONA Project - Anxiety Disorders and Asthma Dataset. (2020)
Mpairwe, Harriet; Webb, Emily
html
SONA project - Risk factors for allergy-related diseases among schoolchildren in Uganda. (2020)
Mpairwe, Harriet; Webb, Emily
description
The patient costs of care for those with TB and HIV: a cross-sectional study from South Africa. (2020)
Mudzengi, Don; Sweeney, Sedona; Hippner, Piotr; Kufa, Tendesayi; Fielding, Katherine; Grant, Alison D.; Churchyard, Gavin J.; Vassall, Anna
description
N
Mongolia MDR-TB contact e-registry ODK 2017. (2020)
Naker, Kush
Effect of intensive versus standard anthelminthic treatment on growth and cognition among children living in a high Schistosoma mansoni transmission setting - Supporting Information. (2020)
Nampijja, Margaret; Lubyayi, Lawrence; Tumusiime, Josephine; Nabulime, Juliet; Kizindo, Robert; Kabuubi, Prossy; Sanya, Richard E.; Kabagenyi, Joyce; Akurut, Hellen; Muhangi, Lawrence; Webb, Emily L.; Alcock, Katie; Elliott, Alison M.; LaVIISWA Trial Team
description
CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020)
Nash, Stephen; Thompson, Jennifer; Leurent, Baptiste
COVID-19 length of hospital stay. (2020)
Nightingale, Emily; Waterlow, Naomi; Clifford, Samuel; Rees, Eleanor
Supplementary files 2 and 3 for "Linking health facility data from young adults aged 18-24 years to longitudinal demographic data: Experience from The Kilifi Health and Demographic Surveillance System". (2020)
Nyundo, Christopher; Doyle, Aoife M.; Walumbe, David; Otiende, Mark; Kinuthia, Michael; Amadi, David; Jibendi, Boniface; Mochamah, George; Kihuha, Norbert; Williams, Thomas; Ross, David A.; Bauni, Evasius
O
Replication Data for: Revealing the extent of the COVID-19 pandemic in Kenya based on serological and PCR-test data. (2020)
Ojal, John; Brand, Samuel P. C.; Were, Vincent; Okiro, Emelda A.; Kombe, Ivy K.; Mburu, Caroline; Aziza, Rabia; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M.; Uyoga, Sophie; Adetifa, Ifedayo M.O.; Scott, J. Anthony G.; Otieno, Edward; Ochola-Oyier, Lynette Isabella; Agoti, Charles N.; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng’ang’a, Wangari; Tsofa, Benjamin; Bejon, Philip; Barasa, Edwine; Keeling, Matt. J.; Nokes, David James
The global scientific research response to the public health emergency of Zika virus infection. S1 Data. (2020)
Oliveira, Juliane Fonseca de; Pescarini, Julia Moreira; Rodrigues, Moreno de Souza; Almeida, Bethania de Araujo; Henriques, Claudio Maierovitch Pessanha; Gouveia, Fabio Castro; Rabello, Elaine Teixeira; Matta, Gustavo Correa; Barreto, Mauricio L.; Sampaio, Ricardo Barros
deworm3 Electronic Treatment Register. (2020)
Oswald, William E.; Kennedy, David S.; Farzana, Jasmine; Kaliappan, Saravanakumar Puthupalayam; Atindegla, Eloic; Houngbégnon, Parfait; Chisambi, Alvin; Witek-mcmanus, Stefan; Galagan, Sean R.; Emmanuel-Fabula, Mira; Gwayi-Chore, Marie-Claire; Legge, Hugo; Yard, Elodie; Kalua, Khumbo; Ibikounlé, Moudachirou; Ajjampur, Sitara Swarna Rao; Means, Arianna Rubin; Ásbjörnsdóttir, Kristjana H.; Halliday, Katherine E.; Walson, Judd L.
Replication Data for: Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. (2020)
Otieno, Grieven P.; Murunga, Nickson; Agoti, Charles N.; Gallagher, Katherine E.; Awori, Juliet O.; Nokes, D. James
P
pegas: Population and Evolutionary Genetics Analysis System. (2020)
Paradis, Emmanuel; Kamvar, Zhian N.; Jombart, Thibaut; Brian, Knaus; Frederic, Michaud
Projections of COVID-19 epidemics in LMIC countries. (2020)
Pearson, Carl A. B.; Van zandvoort, Kevin; Jarvis, Christopher I.; Davies, Nicholas G.; Thompson, Sam; Checchi, Francesco; Jit, Mark; Eggo, Rosalind M.; LSHTM CMMID COVID-19 Working Group
Clinical codelist - Congenital malformation codes. (2020)
Peppa, Maria; Thomas, Sara; Kempley, Steve; Mangtani, Punam
description
HES diagnosis codelist - Congenital malformation codes. (2020)
Peppa, Maria; Thomas, Sara; Kempley, Steve; Mangtani, Punam
description
HES procedures codelist - Congenital malformation codes. (2020)
Peppa, Maria; Thomas, Sara; Kempley, Steve; Mangtani, Punam
code
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel
R
ruwanepi/Detection-analysis. (2020)
Ratnayake, Ruwan
Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020)
Rees, Eleanor M.; Nightingale, Emily S.; Jafari, Yalda; Waterlow, Naomi R.; Clifford, Samuel; B. Pearson, Carl A.; CMMID Working Group; Jombart, Thibaut; Procter, Simon R.; Knight, Gwenan M.
geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020)
Robert, Alexis
o2geosocial. (2020)
Robert, Alexis; Funk, Sebastian; Kucharski, Adam J.
Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020)
Russell, Timothy W.; Golding, Nick; Hellewell, Joel; Abbott, Sam; Pearson, Carl A B; Van zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.; CMMID COVID-19 working group
thimotei/CFR_calculation. (2020)
Russell, Timothy W.; Hellewell, Joel; Abbott, Sam; Jarvis, Christopher; Zandvoort, Kevin van; Ratnayake, Ruwan; CMMID nCov working group; Flasche, Stefan; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.
Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020)
Russell, Timothy W.; Hellewell, Joel; Jarvis, Christopher I.; Van-Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Flasche, Stefan; Eggo, Rosalind M; Kucharski, Adam J.
thimotei/covid_travel_restrictions. (2020)
Russell, Timothy W.; Wu, Joseph T; Clifford, Samuel; CMMID COVID-19 working group; Edmunds, W John; Kucharski, Adam J.; Jit, Mark
S
epiforecasts/rt-comparison-uk-public: v1.0.0. (2020)
Sherratt, Katharine
Crimean-congo haemorrhagic fever virus detected in Rhipicephalus ticks feeding on cattle in an abattoir, Uganda. (2020)
Stubbs, Sam
BILHIV acceptability dataset. (2020)
Sturt, Amy; Bustinduy, Amaya; Phiri, Comfort
description
tomsumner/Latency_Model_Comparison_Public. (2020)
Sumner, Tom
Mapping the cryptic spread of the 2015–2016 global Zika virus epidemic. (2020)
Sun, Haoyang; Dickens, Borame L.; Jit, Mark; Cook, Alex R.; Carrasco, L. Roman
T
deusthindwa/Electronic-Data-Capture-for-Large-Scale-Typhoid-Surveillance---STRATAA: edc. (2020)
Thindwa, Deus; Oxford Vaccine Group; Mujadidi, Yama Farooq
COVID-19 risk group - Neurological disease codelist. (2020)
Thomas, Sara
description
Code lists for: "Social determinants of pertussis and influenza vaccine uptake in pregnancy: a national cohort study using electronic health records". (2020)
Thomas, Sara
Influenza clinical risk groups 2017 version - Asthma. (2020)
Thomas, Sara
description
Influenza clinical risk groups 2017 version - Chronic cardiac conditions. (2020)
Thomas, Sara
description
Influenza clinical risk groups 2017 version - Chronic renal disease diagnoses. (2020)
Thomas, Sara
description
Influenza clinical risk groups 2017 version - Chronic respiratory disease (not asthma). (2020)
Thomas, Sara
description
Influenza clinical risk groups 2017 version - Diabetes. (2020)
Thomas, Sara
code
Influenza risk groups 2017 version - Chronic liver disease. (2020)
Thomas, Sara
description
Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020)
Thompson, Jennifer
V
COVID-19 vaccine development pipeline. (2020)
Vaccine Centre
Epigenome-wide association study for perceived discrimination among sub-Saharan African migrants in Europe - the RODAM study. (2020)
van der Laan, Loes C.; Meeks, Karlijn A. C.; Chilunga, Felix P.; Agyemang, Charles; Venema, Andrea; Mannens, Marcel M. A. M.; Zafarmand, Mohammad H.; Klipstein-Grobusch, Kerstin; Smeeth, Liam; Adeyemo, Adebowale; Henneman, Peter
W
LaVIISWA Round 1 and 2 Dataset. (2020)
Webb, Emily; Nampijja, Margaret
grid_on
Social Contact Rates (SOCRATES) Data Tool. (2020)
Willem, Lander; Hoang, Van Thang; Funk, Sebastian; Coletti, Pietro; Beutels, Philippe; Hens, Niel
Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). (2020)
Willem, Lander; Xiao, Li; Antillon, Marina; Bilcke, Joke; Jit, Mark; Beutels, Philippe
opensafely/risk-factors-research. (2020)
Williamson, Elizabeth; Walker, Alex J; Bhaskaran, Krishnan J; Bacon, Seb; Bates, Chris; Morton, Caroline E; Curtis, Helen J; Mehrkar, Amir; Evans, David; Inglesby, Peter; Cockburn, Jonathan; Mcdonald, Helen I; MacKenna, Brian; Tomlinson, Laurie; Douglas, Ian J; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Grieve, Richard; Harrison, David; Forbes, Harriet; Schultze, Anna; Croker, Richard T; Parry, John; Hester, Frank; Harper, Sam; Perera, Rafael; Evans, Stephen; Smeeth, Liam; Goldacre, Ben