Items where Data Creator is "Holt, Kathryn E."
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Holt, KE (2020). Kleborate. [Data Collection]. Github. https://github.com/katholt/Kleborate
Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Figshare. https://doi.org/10.26180/5c67982956721
Chung The, H, Boinett, C, Thanh, DP, Jenkins, C, Weill, F, Howden, BP, Valcanis, M, De Lappe, N, Cormican, M, Wangchuk, S, Bodhidatta, L, Mason, CJ, Thi Nguyen, TN, Ha Thanh, T, Voong, VP, Duong, VT, Lan Nguyen, PH, Turner, P, Wick, R, Ceyssens, P, Thwaites, G, Holt, KE, Thomson, N, Rabaa, MA and Baker, S (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-12823-0
Ingle, DJ, Nair, S, Hartman, H, Ashton, PM, Dyson, ZA, Day, M, Freedman, J, Chattaway, MA, Holt, KE and Dallman, TJ (2019). Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007620
Chung The, H, Boinett, C, Pham Thanh, D, Jenkins, C, Weill, F, Howden, BP, Valcanis, M, De Lappe, N, Cormican, M, Wangchuk, S, Bodhidatta, L, Mason, CJ, Nguyen, TNT, Ha Thanh, T, Voong, VP, Duong, VT, Nguyen, PHL, Turner, P, Wick, R, Ceyssens, P, Thwaites, G, Holt, KE, Thomson, NR, Rabaa, MA and Baker, S (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8856641.v1
Wick, RR, Judd, LM and Holt, KE (2019). Additional file 2 of: Performance of neural network basecalling tools for Oxford Nanopore sequencing. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8319506.v1
Hawkey, J, Le Hello, S, Doublet, B, Granier, SA, Hendriksen, RS, Fricke, WF, Ceyssens, P, Gomart, C, Billman-Jacobe, H, Holt, KE and Weill, F (2019). Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198. [Data Collection]. Microbial Genomics. https://doi.org/10.1099/mgen.0.000269
Wyres, KL, Wick, RR, Judd, LM, Froumine, R, Tokolyi, A, Gorrie, CL, Lam, MM, Duchêne, S, Jenney, A and Holt, K (2019). Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. [Data Collection]. PLoS Genetics. https://doi.org/10.1371/journal.pgen.1008114
Watts, S and Holt, KE (2019). hicap validation assembly set. [Data Collection]. Figshare. https://doi.org/10.26180/5c352c5110712
Lam, MMC, Wyres, KL, Wick, RR, Judd, LM, Fostervold, A, Holt, KE and Löhr, IH (2019). Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15. [Data Collection]. Journal of Antimicrobial Chemotherapy. https://doi.org/10.1093/jac/dkz028
Boinett, CJ, Cain, AK, Hawkey, J, Do Hoang, NT, Khanh, NNT, Thanh, DP, Dordel, J, Campbell, JI, Lan, NPH, Mayho, M, Langridge, GC, Hadfield, J, Chau, NVV, Thwaites, GE, Parkhill, J, Thomson, NR, Holt, KE and Baker, S (2019). Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. [Data Collection]. Microbial genomics. https://doi.org/10.1099/mgen.0.000246
M. C. Lam, M, Wyres, KL, Duchêne, S, Wick, RR, Judd, LM, Gan, Y, Hoh, C, Archuleta, S, Molton, JS, Kalimuddin, S, Koh, TH, Passet, V, Brisse, S and Holt, KE (2018). Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-018-05114-7
Holt, KE and Wyres, K (2018). Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. [Data Collection]. University of Melbourne, Australia. https://doi.org/10.4225/49/5ac3670f83717
Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S (2017). Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. [Data Collection]. Nature Communications. https://doi.org/10.1038/ncomms15483
Duchêne, S, Holt, KE, Weill, F, Le Hello, S, Hawkey, J, Edwards, DJ, Fourment, M and Holmes, EC (2016). Bacteria genomic rates data: First release. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.45951