Item Type Title No Grouping

A

ALERT stepped-wedge trial in Benin, Malawi, Tanzania and Uganda — full Stata pipeline (data cleaning, analysis and meta-analysis). (2026) Waiswa, Joseph Akuze; Alsina, María del Rosario; Straneo, Manuela; Sun, Sunjuri; Sidney Annerstedt, Kristi; Waiswa, Peter; ALERT study team; Hanson, Claudia

airport_screening_ebola_bvd: Effectiveness of airport screening for Bundibugyo ebolavirus. (2026) Quilty, Billy

AgenticGenomics: pharmacogenomics benchmark dataset for "Trustworthy agentic genomics through versioned skill libraries". (2026) Corpas, Manuel; Iacoangeli, Alfredo; Bourdenx, Mathieu; Skene, Nathan; Aldraimli, Mahmoud; Fatumo, Segun; Guio, Heinner

Acoustic individual identification in a species of field cricket using deep learning. (2026) Kabuga, Emmanuel; Nandi, Diptarup; Burrell, Stuart; Dlamini, Gciniwe; Balakrishnan, Rohini; Bah, Bubacarr; Durbach, Ian

AMRverse/AMRgen. (2026) Holt, Kathryn E.; Berends, Matthijs; Foster-Nyarko, Ebenezer; Hawkey, Jane; karatsang; Nagy, Dorotty A; Dyson, Zoe Anne; Prasad, Arjun; Couto, Natacha; Goodman, Richard; Claude; Silargi; Cuddihy, Thom

AMRverse/AMRrulebrowser. (2026) Cerdeira, Louise; Holt, Kathryn E.

B

beyondcancer/BC_respiratory_public: BC_respiratory_outcomes_v1.0.0. (2026) Andresen, Kirsty

C

cornejo-cesar/healthy-diets-meta-analysis: Replication Package. (2026) Godines, Gladys; Cornejo, Cesar

Code for: "Reusable Menstrual Underwear: Use and Acceptability by Internally Displaced Women in Somalia". (2026) DMello-Guyett, Lauren; Gilmer, Abigail description

Code for "Climate Change, Hygiene and Health: A research roadmap to climate adaptation". (2026) Gerard, Jessica; D’Mello-Guyett, Lauren grid_on

Code and data for: Composable probabilistic models can lower barriers to rigorous infectious disease modelling. (2026) Abbott, Sam; Brand, Samuel P. C; Ge, Hong; Johnson, Kaitlyn E.; Frost, Simon D. W; Cori, Anne; Funk, Sebastian

cmmid/h5n1_uk_scenario_model. (2026) Russell, Timothy; Lambert, Joshua W.; Quilty, Billy; Azam, James M.

cmmid/h5n1_uk_scenario_modelling. (2026) Russell, Timothy W.; Lambert, Joshua W.; Quilty, Billy; Azam, James M.

D

Dragon. (2026) Cerdeira, Louise

E

EmilieFinch/DR-covid19. (2026) Finch, Emilie

ehr-lshtm/Infections-Frailty-England: A multistate model of frailty progression after severe infections in adults ≥65 years in England: a matched-cohort study. (2026) Asare, Kwabena

ehr-lshtm/Infections-Frailty-US: Frailty progression following severe infections in adults ≥65 years in US and England: two matched cohort studies. (2026) Asare, Kwabena

epiforecasts/evalvariantnowcasthub. (2026) Johnson, Kaitlyn E.; Robacker, Thomas; Claude; Linton, Natalie

Effectiveness of pneumococcal vaccination campaigns in humanitarian settings: a modelling study. Data, model code, and analyses. (2026) Van Zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Cummings, Rachael; Warsame, Abdihamid; Pell, Casey L; Abdi, Mohamed Ismail; Ibrahim, Saed; Mcgowan, Catherine R; Mulholland, E Kim; Satzke, Catherine; Eggo, Rosalind M.; Hergeye, Mohamed Abdi; Checchi, Francesco; Flasche, Stefan

Extreme heat and cause-specific risk of hospital admission in the adult population in England: a case time series analysis. (2026) Cole, Rebecca

epiforecasts/scoringutils. (2026) Bosse, Nikos; Abbott, Sam; Funk, Sebastian; Azam, James M.; Gruson, Hugo; Asakura, Toshiaki R.; Chirico, Michael; Kennedy, Jack; Howes, Adam; Reich, Nicholas G; Bayer, Damon

EpiRecipes/EpiPolicies. (2026) Montes, Sandra; Frost, Simon

EpiAware/CensoredDistributions.jl. (2026) Abbott, Sam; DeWitt, Michael; Brand, Samuel; Funk, Sebastian; Bayer, Damon; Lemaitre, Joseph; Vyshnavi0702

epiforecasts/eval-by-method. (2026) Sherratt, Katharine; Funk, Sebastian; Abbott, Sam

F

francescochecchi/bvd_sdb_sim. (2026) Checchi, Francesco

G

georgiagl/infection_mental_health_public. (2026) Gore-Langton, Georgia R.

H

HIGH Horizons - Long term heat exposure during pregnancy and effects on perinatal health: Data analysis protocol, codes and R scripts. (2026) Bao, Mian; Nobile, Federica; Koureas, Michalis; Bottini, Isabella; Fomenko, Elizaveta; Brimicombe, Chloe; Tirado, Veronika; Mouchtouri, Varvara; Hadjichristodoulou, Christos; Ljungman, Petter; Chersich, Matthew; Jackson, Debra; Luchters, Stanley; Stephansson, Olof; Stafoggia, Massimo; de Bont, Jeroen

I

Increasingly complex mosquito vector and pathogen risks along European anthropogenic land use gradients. (2026) Desjardins, Aidan; Bamford, Connor G. G.; Murchie, Archie K; Haddock, Lesley; Morgan, Eric R.; Cameron, Mary; Campino, Susana; Medlock, Jolyon M.; Cuthbert, Ross N.

J

johntaz/PNU-designs. (2026) Tazare, John

johntaz/HDPS-R. (2026) Tazare, John

K

Klebsiella_reports. (2026) Jolley, Keith

klebgenomics/KlebNNS_transmission. (2026) Odih, Erkison Ewomazino; Holt, Kathryn E.

L

lcerdeira/CNVRock: CNVRock. (2026) Cerdeira, Louise

lcerdeira/infectonet. (2026) Cerdeira, Louise

M

migariane/Causal-Inference-Book: Causal Inference for Applied Researchers. (2026) Luque-Fernandez, Miguel Angel

migariane/MatematicaEstadisticaMedicinaR: Matemática Estasdítica para Medicina y Ciencias de la Salud. (2026) Luque-Fernandez, Miguel Angel

mrc-ide/epireview. (2026) Bhatia, Sangeeta; Morgenstern, Christian; Nash, Rebecca; myles, Tristan; McCabe, Ruth; McCain, Kelly; Santoni, Cosmo; Rawson, Thomas; Lambert, Joshua W.; Doohan, Patrick; Pesántez, Shazia Ruybal; Cori, Anne; Cuomo-Dannenburg, Gina; Hicks, JT; Unwin, Juliette; Liétar, Paul; Sheppard, R. J.

migariane/eltmle. (2026) Luque-Fernandez, Miguel Angel; Smith, Matthew J.; Maringe, Camille

Maximum likelihood estimation of phylogenetic branch lengths for a star-like phylogeny. (2026) Hall, Matthew; Ferretti, Luca

N

nicholasdavies/transposons: Code and data for "Host suppression prevents a molecular tragedy of the commons in transposon evolution". (2026) Davies, Nicholas G.

P

PlasmidNET. (2026) Cerdeira, Louise

Predictive Modelling for Stillbirths and Neonatal Deaths in Sub-Saharan Africa. (2026) Akuze, Joseph; Victor, Audêncio; Bourke, Miriam; Wanduru, Phillip; Blencowe, Hannah; Ohuma, Eric O.

R

Replication dataset for results reported in: A global assessment of dengue seasonality: Applying a novel, proportion-based method to case time series from 1990 to 2024. (2026) Joshi, Kishen; Brady, Oliver J.; Lim, Ahyoung; Susong, Katie; Liu, Yang

V

VBD Hub: Open-source platform for vector-borne disease data integration. (2026) Cator, Lauren; Pawar, Samraat; Pearse, Will; White, Steven; Modrak, Stanislav; Windram, Francis; Kelly, Sarah; Jones, Robert; Vineer, Hannah; England, Marion; Sanders, Christopher