Item Type Title No Grouping

A

ATLopezJimenez/ImageJ_macro_EdU_signal: v.1.0.0. (2026) López-jiménez, Ana Teresa

ATLopezJimenez/ImageJ_macro_fluorescence_loss: v.1.0.0. (2026) López-jiménez, Ana Teresa

ALERT stepped-wedge trial in Benin, Malawi, Tanzania and Uganda — full Stata pipeline (data cleaning, analysis and meta-analysis). (2026) Waiswa, Joseph Akuze; Alsina, María del Rosario; Straneo, Manuela; Sun, Sunjuri; Sidney Annerstedt, Kristi; Waiswa, Peter; ALERT study team; Hanson, Claudia

airport_screening_ebola_bvd: Effectiveness of airport screening for Bundibugyo ebolavirus. (2026) Quilty, Billy

AgenticGenomics: pharmacogenomics benchmark dataset for "Trustworthy agentic genomics through versioned skill libraries". (2026) Corpas, Manuel; Iacoangeli, Alfredo; Bourdenx, Mathieu; Skene, Nathan; Aldraimli, Mahmoud; Fatumo, Segun; Guio, Heinner

Acoustic individual identification in a species of field cricket using deep learning. (2026) Kabuga, Emmanuel; Nandi, Diptarup; Burrell, Stuart; Dlamini, Gciniwe; Balakrishnan, Rohini; Bah, Bubacarr; Durbach, Ian

AMRverse/AMRgen. (2026) Holt, Kathryn E.; Berends, Matthijs; Foster-Nyarko, Ebenezer; Hawkey, Jane; karatsang; Nagy, Dorotty A; Dyson, Zoe Anne; Prasad, Arjun; Couto, Natacha; Goodman, Richard; Claude; Silargi; Cuddihy, Thom

Audency/gwg-sitar-brazil. (2026) Victor, Audêncio

AMRverse/AMRrulebrowser. (2026) Cerdeira, Louise; Holt, Kathryn E.

B

beyondcancer/BC_respiratory_public: BC_respiratory_outcomes_v1.0.0. (2026) Andresen, Kirsty

baselinenowcast: Baseline Nowcasting for Right-Truncated Epidemiological Data. (2026) Johnson, Kaitlyn; Tyszka, Emily; Bracher, Johannes; Funk, Sebastian; Abbott, Sam; Taylor, Tim

C

Code for: "Interfacility transfers of children in Greater Jakarta: a mixed-methods study with registry-based, case-control, and in-depth interview components to assess effectiveness and functionality". (2026) Gupta, Prateek description

cmmid/gaza-response. (2026) Van Zandvoort, Kevin; Sherratt, Katharine; Judge, Ciara; Mccarthy, Ciara; Brigitta, Clara

chrissyhroberts/ResearchOS. (2026) Roberts, Chrissy

CAPTURE-TB-HIV/capturetb. (2026) Hill, Alex

cmmid/ebola-importation. (2026) Davies, Nicholas G.

Codes for GH CEmONC referral analysis. (2026) Wong, Kerry Lm

Code for "Predicting schistosome transmission in rural Uganda using water contact data from wearable GPS devices". (2026) Reitzug, Fabian; Iacovidou, Melissa A; Kabatereine, Narcis B; Nabatte, Betty; Eyre, Max T.; Tinkitina, Benjamin; Byaruhanga, Anatol M; Lambiotte, Renaud; Chami, Goylette F

ciarajudge/YFV_Brazil. (2026) Judge, Ciara

cornejo-cesar/healthy-diets-meta-analysis: Replication Package. (2026) Godines, Gladys; Cornejo, Cesar

Code for: "Reusable Menstrual Underwear: Use and Acceptability by Internally Displaced Women in Somalia". (2026) DMello-Guyett, Lauren; Gilmer, Abigail description

Code for "Climate Change, Hygiene and Health: A research roadmap to climate adaptation". (2026) Gerard, Jessica; D’Mello-Guyett, Lauren grid_on

contactsurveys: Download Contact Surveys for Use in Infectious Disease Modelling. (2026) Funk, Sebastian; Tierney, Nicholas; Gruson, Hugo

Code and data for: Composable probabilistic models can lower barriers to rigorous infectious disease modelling. (2026) Abbott, Sam; Brand, Samuel P. C; Ge, Hong; Johnson, Kaitlyn E.; Frost, Simon D. W; Cori, Anne; Funk, Sebastian

cmmid/h5n1_uk_scenario_model. (2026) Russell, Timothy; Lambert, Joshua W.; Quilty, Billy; Azam, James M.

cmmid/h5n1_uk_scenario_modelling. (2026) Russell, Timothy W.; Lambert, Joshua W.; Quilty, Billy; Azam, James M.

D

Drivers of sex differences in Mycobacterium tuberculosis immunoreactivity among adolescents and adults in Blantyre, Malawi. (2026) Phiri, Mphatso D.; Rickman, Hannah M.; Mbale, Hannah; Feasey, Helena R. A.; Nliwasa, Marriott; Schwalb, Alvaro; Mwenyenkulu, Tisungane E.; Mbendera, Kuzani N.; Mwandumba, Henry C.; Corbett, Elizabeth L.; Squire, S Bertel; Henrion, Marc Y. R.; Horton, Katherine C.; MacPherson, Peter

Dragon. (2026) Cerdeira, Louise

danaitani/Tunisia_kpn_WGS_metadata: WGS Tunisian Klebsiella pneumoniae study. (2026) Itani, Dana

dynamice_seroR0. (2026) Fu, Han

E

EmilieFinch/DR-covid19. (2026) Finch, Emilie

epiparameterReportingGuidance: Impact of Ambiguously Reported Epidemiological Parameters. (2026) Lambert, Joshua W.; Tamayo, Carmen; Bhatia, Sangeeta; Cuomo-Dannenburg, Gina; McCabe, Ruth

ehr-lshtm/acute_kidney_injury_norovirus_healthecon_evaluation. (2026) Bolt, Hikaru

ehr-lshtm/Infections-Frailty-England: A multistate model of frailty progression after severe infections in adults ≥65 years in England: a matched-cohort study. (2026) Asare, Kwabena

ehr-lshtm/Infections-Frailty-US: Frailty progression following severe infections in adults ≥65 years in US and England: two matched cohort studies. (2026) Asare, Kwabena

epiforecasts/evalvariantnowcasthub. (2026) Johnson, Kaitlyn E.; Robacker, Thomas; Claude; Linton, Natalie

Effectiveness of pneumococcal vaccination campaigns in humanitarian settings: a modelling study. Data, model code, and analyses. (2026) Van Zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Cummings, Rachael; Warsame, Abdihamid; Pell, Casey L; Abdi, Mohamed Ismail; Ibrahim, Saed; Mcgowan, Catherine R; Mulholland, E Kim; Satzke, Catherine; Eggo, Rosalind M.; Hergeye, Mohamed Abdi; Checchi, Francesco; Flasche, Stefan

Extreme heat and cause-specific risk of hospital admission in the adult population in England: a case time series analysis. (2026) Flower, Gillian; Cole, Rebecca; Miero, Luis; Quint, Jennifer K.; Gasparrini, Antonio; Masselot, Pierre

epiforecasts/scoringutils. (2026) Bosse, Nikos; Abbott, Sam; Funk, Sebastian; Azam, James M.; Gruson, Hugo; Asakura, Toshiaki R.; Chirico, Michael; Kennedy, Jack; Howes, Adam; Reich, Nicholas G; Bayer, Damon

EpiRecipes/EpiPolicies. (2026) Montes, Sandra; Frost, Simon

EpiAware/CensoredDistributions.jl. (2026) Abbott, Sam; DeWitt, Michael; Brand, Samuel; Funk, Sebastian; Bayer, Damon; Lemaitre, Joseph; Vyshnavi0702

epiforecasts/eval-by-method. (2026) Sherratt, Katharine; Funk, Sebastian; Abbott, Sam

F

francescochecchi/bvd_sdb_sim. (2026) Checchi, Francesco

G

georgiagl/infection_mental_health_public. (2026) Gore-Langton, Georgia R.

H

HIGH Horizons - Long term heat exposure during pregnancy and effects on perinatal health: Data analysis protocol, codes and R scripts. (2026) Bao, Mian; Nobile, Federica; Koureas, Michalis; Bottini, Isabella; Fomenko, Elizaveta; Brimicombe, Chloe; Tirado, Veronika; Mouchtouri, Varvara; Hadjichristodoulou, Christos; Ljungman, Petter; Chersich, Matthew; Jackson, Debra; Luchters, Stanley; Stephansson, Olof; Stafoggia, Massimo; de Bont, Jeroen

I

Increasingly complex mosquito vector and pathogen risks along European anthropogenic land use gradients. (2026) Desjardins, Aidan; Bamford, Connor G. G.; Murchie, Archie K; Haddock, Lesley; Morgan, Eric R.; Cameron, Mary; Campino, Susana; Medlock, Jolyon M.; Cuthbert, Ross N.

J

joshwlambert/propose. (2026) Lambert, Joshua W.

johntaz/PNU-designs. (2026) Tazare, John

johntaz/HDPS-R. (2026) Tazare, John

K

Klebsiella_reports. (2026) Jolley, Keith

klebgenomics/KlebNNS_transmission. (2026) Odih, Erkison Ewomazino; Holt, Kathryn E.

L

Lifetime PBK model for PFOA and PFOS. (2026) Kalina, Jiří; Jiří, Komprda; Sapunova, Daria; Vogs, Carolina; Deepika; Kumar, Vikas; Westerhout, Joost; Ratier, Aude; Pachoulide, Chrysanthi; Kruisselbrink, Johannes; Engel, Jasper; Fletcher, Tony; Andersson, Axel; Piler, Pavel; Šenk, Petr; Komprdová, Klára

lshtm-tbmg/PACE-TB. (2026) Horton, Katherine C.; Venero-Garcia, Elena; Clark, Rebecca; Harker, Martin

lcerdeira/CNVRock: CNVRock. (2026) Cerdeira, Louise

lcerdeira/infectonet. (2026) Cerdeira, Louise

M

migariane/RentaMedianaAndalucia. (2026) Luque Fernandez, Miguel Angel

maxeyre/Toxo-PdL-children. (2026) Eyre, Max T.

migariane/Causal-Inference-Book: Causal Inference for Applied Researchers. (2026) Luque-Fernandez, Miguel Angel

migariane/MatematicaEstadisticaMedicinaR: Matemática Estasdítica para Medicina y Ciencias de la Salud. (2026) Luque-Fernandez, Miguel Angel

modeldiag: Comprehensive Diagnostics for Statistical Models. (2026) Adewuyi, Emmanuel; Lukman, Adewale; Owolabi, Abiola

mrc-ide/epireview. (2026) Bhatia, Sangeeta; Morgenstern, Christian; Nash, Rebecca; myles, Tristan; McCabe, Ruth; McCain, Kelly; Santoni, Cosmo; Rawson, Thomas; Lambert, Joshua W.; Doohan, Patrick; Pesántez, Shazia Ruybal; Cori, Anne; Cuomo-Dannenburg, Gina; Hicks, JT; Unwin, Juliette; Liétar, Paul; Sheppard, R. J.

migariane/eltmle. (2026) Luque-Fernandez, Miguel Angel; Smith, Matthew J.; Maringe, Camille

Maximum likelihood estimation of phylogenetic branch lengths for a star-like phylogeny. (2026) Hall, Matthew; Ferretti, Luca

N

nfidd/nfidd. (2026) Funk, Sebastian; Abbott, Sam; Sherratt, Katharine; Azam, James M.; Stapper, Manuel; Susswein, Zachary

nicholasdavies/transposons: Code and data for "Host suppression prevents a molecular tragedy of the commons in transposon evolution". (2026) Davies, Nicholas G.

P

PlasmidNET. (2026) Cerdeira, Louise

Predictive Modelling for Stillbirths and Neonatal Deaths in Sub-Saharan Africa. (2026) Akuze, Joseph; Victor, Audêncio; Bourke, Miriam; Wanduru, Phillip; Blencowe, Hannah; Ohuma, Eric O.

PierreMasselot/CIRLS-GLM. (2026) Masselot, Pierre

Q

Quantitative interferon gamma responses to Mycobacterium tuberculosis in a community-based survey of adolescents and adults in Blantyre, Malawi. (2026) Phiri, Mphatso, D; Rickman, Hannah M.; Mandalasi, Christine; Chirambo, Aaron; Jambo, Kondwani, C.; Mwandumba, Henry, C; Corbett, Elizabeth L.; Horton, Katherine C.; Henrion, Marc, Y. R.; MacPherson, Peter

R

Replication dataset for results reported in: A global assessment of dengue seasonality: Applying a novel, proportion-based method to case time series from 1990 to 2024. (2026) Joshi, Kishen; Brady, Oliver J.; Lim, Ahyoung; Susong, Katie; Liu, Yang

V

VBD Hub: Open-source platform for vector-borne disease data integration. (2026) Cator, Lauren; Pawar, Samraat; Pearse, Will; White, Steven; Modrak, Stanislav; Windram, Francis; Kelly, Sarah; Jones, Robert; Vineer, Hannah; England, Marion; Sanders, Christopher

W

West Africa food fortification analysis: code and data sources. (2026) Agu, Uchenna; Becher, Emily; Battcock, Gabriel; Hernandez, Daniel; Osman, Mohammed; Tang, Kevin