danaitani/Tunisia_kpn_WGS_metadata: WGS Tunisian Klebsiella pneumoniae study

This repository contains de-identified metadata and analysis code associated with whole-genome sequencing (WGS) of third-generation cephalosporin-resistant Klebsiella pneumoniae isolates collected through the Tunisian Antimicrobial Resistance Surveillance System (TARSS). These data were used for genomic epidemiological analyses presented in a PhD thesis at the London School of Hygiene & Tropical Medicine and in related research manuscripts.

Additional Information

Raw sequencing reads and accession numbers for all isolates included in the study are publicly available in the European Nucleotide Archive (ENA): BioProject: PRJEB98550 (https://www.ebi.ac.uk/ena/browser/view/PRJEB98550)

Keywords

Klebsiella pneumoniae; Tunisia