LSHTM Organisational Structure (3749)

Faculty of Infectious and Tropical Diseases (1005)

Department of Infection Biology (176) Data Creators(s) Title Item Type No Grouping

A

The impact of cognate strategy training on guessing accuracy for unknown visually-presented words: The case of Japanese learners of English. (2022) Allen, David J.

C

francesccoll/powerbacgwas. (2022) Coll, Francesc

D

zadyson/SNV_Stats_Generator. (2022) Dyson, Zoe Anne

Accession numbers and data for S. Typhi sequences used in this study. (2022) Dyson, Zoe Anne; Malau, Elisheba; Horwood, Paul F; Ford, Rebecca; Siba, Valentine; Yoannes, Mition; Pomat, William; Passey, Megan; Judd, Louise M; Ingle, Danielle J; Williamson, Deborah A; Dougan, Gordon; Greenhill, Andrew R; Holt, Kathryn E

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. (2022) Dyson, Zoe Anne; Malau, Elisheba; Horwood, Paul F; Ford, Rebecca; Siba, Valentine; Yoannes, Mition; Pomat, William; Passey, Megan; Judd, Louise M; Ingle, Danielle J; Williamson, Deborah A; Dougan, Gordon; Greenhill, Andrew R; Holt, Kathryn E

Outgroups used for phylogenetic tree rooting. (2022) Dyson, Zoe Anne; Malau, Elisheba; Horwood, Paul F; Ford, Rebecca; Siba, Valentine; Yoannes, Mition; Pomat, William; Passey, Megan; Judd, Louise M; Ingle, Danielle J; Williamson, Deborah A; Dougan, Gordon; Greenhill, Andrew R; Holt, Kathryn E

katholt/RedDog. (2022) d-j-e; Holt, Kathryn E.; Wyres, Kelly L

E

A computational method for predicting the most likely evolutionary trajectories in the stepwise accumulation of resistance mutations. (2022) Eccleston, R. Charlotte; Manko, Emilia; Campino, Susana; Clark, Taane G.; Furnham, Nicholas

G

Defining the genes required for survival of Mycobacterium bovis in the bovine host offers novel insights into the genetic basis of survival of pathogenic mycobacteria. (2022) Gibson, Amanda Jane; Stiens, Jennifer; Passmore, Ian J.; Faulkner, Valwynne; Miculob, Josephous; Willcocks, Sam; Coad, Michael; Berg, Stefan; Werling, Dirk; Wren, Brendan W; Nobeli, Irene; Villarreal-Ramos, Bernardo; Kendall, Sharon Louise

H

Additional file 1 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane; Wyres, Kelly L.; Judd, Louise M.; Harshegyi, Taylor; Blakeway, Luke; Wick, Ryan R.; Jenney, Adam W. J.; Holt, Kathryn E.

Additional file 3 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane; Wyres, Kelly L.; Judd, Louise M.; Harshegyi, Taylor; Blakeway, Luke; Wick, Ryan R.; Jenney, Adam W. J.; Holt, Kathryn E.

Additional file 4 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane; Wyres, Kelly L.; Judd, Louise M.; Harshegyi, Taylor; Blakeway, Luke; Wick, Ryan R.; Jenney, Adam W. J.; Holt, Kathryn E.

I

Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate. (2022) Ijaz, Umer Zeeshan; Gundogdu, Ozan; Keating, Ciara; Eekert, Miriam van; Gibson, Walter; Parkhill, Julian; Abilahi, Faraji; Liseki, Benard; Nguyen, Viet-Anh; Sudgen, Steven; Quince, Christopher; Ensink, Jeroen H. J.; Torondel, Belen; Walker, Alan W.

K

Investigation of Vibrio cholerae pathogenesis using a novel human intestinal model of infection. (2022) Kane, Leanne

L

Campylobacter coli strain, whole genome shotgun sequencing project. (2022) Lehri, Burhan; Navoly, G; Willcocks, Sam; Huong, LQ; Stabler, Richard A

CDC50 interacting partners of Plasmodium falcipraum. (2022) London School of Hygiene & Tropical Medicine

Environmental detection of vector larvae. (2022) London School of Hygiene & Tropical Medicine

M

Table 1 - The role of cholesterol in invasion and growth of malaria parasites. (2022) Maier, Alexander G.; Van ooij, Christiaan

N

Campylobacter jejuni interactions with Acanthamoeba castellanii. (2022) Nasher, Fauzy; Lehri, Burhan; Horney, Megan; Stabler, Richard; Wren, Brendan W

O

De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members. (2022) Oresegun, Damilola R.; Thorpe, Peter; Benavente, Ernest Diez; Campino, Susana; Muh, Fauzi; Moon, Robert William; Clark, Taane Gregory; Cox-Singh, Janet

Correlation coefficient results for all protein pairs. (2022) Oulton, Tate; Obiero, Joshua; Rodriguez, Isabel; Ssewanyana, Isaac; Dabbs, Rebecca A.; Bachman, Christine M.; Greenhouse, Bryan; Drakeley, Chris; Felgner, Phil L.; Stone, Will J. R.; Tetteh, Kevin K. A.

Detail of expressed protein targets. (2022) Oulton, Tate; Obiero, Joshua; Rodriguez, Isabel; Ssewanyana, Isaac; Dabbs, Rebecca A.; Bachman, Christine M.; Greenhouse, Bryan; Drakeley, Chris; Felgner, Phil L.; Stone, Will J. R.; Tetteh, Kevin K. A.

P

Supplementary information, CDC50 orthologues in Plasmodium falciparum have distinct roles in merozoite egress and trophozoite maturation. (2022) Patel, Avnish; Nofal, Stephanie D.; Blackman, Michael J.; Baker, David A.

R

Additional file 2 of Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo; Key, Stephanie; Lindblade, Kim A.; Vythilingam, Indra; Drakeley, Chris; Fornace, Kimberly

Additional file 3 of Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo; Key, Stephanie; Lindblade, Kim A.; Vythilingam, Indra; Drakeley, Chris; Fornace, Kimberly

Additional file 4 of Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo; Key, Stephanie; Lindblade, Kim A.; Vythilingam, Indra; Drakeley, Chris; Fornace, Kimberly

Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo; Key, Stephanie; Lindblade, Kim A.; Vythilingam, Indra; Drakeley, Chris; Fornace, Kimberly

S

Repositioning of a Diaminothiazole Series Confirmed to Target the Cyclin-Dependent Kinase CRK12 for Use in the Treatment of African Animal Trypanosomiasis. (2022) Smith, Alasdair; Wall, Richard J; Patterson, Stephen; Rowan, Tim; Rico Vidal, Eva; Stojanovski, Laste; Huggett, Margaret; Hampton, Shahienaz E; Thomas, Michael G; Corpas Lopez, Victoriano; Gillingwater, Kirsten; Duke, Jeff; Napier, Grant; Peter, Rose; Vitouley, Hervé S; Harrison, Justin R; Milne, Rachel; Jeacock, Laura; Baker, Nicola; Davis, Susan H; Simeons, Frederick; Riley, Jennifer; Horn, David; Brun, Reto; Zuccotto, Fabio; Witty, Michael J; Wyllie, Susan; Read, Kevin D; Gilbert, Ian H

AntonS-bio/entropy. (2022) Spadar, Anton

V

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S1 File. (2022) Verboven, Lennert; Phelan, Jody; Heupink, Tim H.; Van Rie, Annelies

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S2 File. (2022) Verboven, Lennert; Phelan, Jody; Heupink, Tim H.; Van Rie, Annelies

W

Genome details for the simulated-read tests. (2022) Wick, Ryan R.; Holt, Kathryn E.

Polypolish: Short-read polishing of long-read bacterial genome assemblies. (2022) Wick, Ryan R.; Holt, Kathryn E.

Assembly and polishing details for the real-read tests. (2022) Wick, Ryan R; Holt, Kathryn E

Confusion matrices for the simulated-read tests. (2022) Wick, Ryan R; Holt, Kathryn E

Predictors of assembly quality. (2022) Wick, Ryan R; Holt, Kathryn E

Raw results for the real-read tests. (2022) Wick, Ryan R; Holt, Kathryn E

Raw results for the simulated-read tests. (2022) Wick, Ryan R; Holt, Kathryn E

katholt/Kaptive. (2022) Wick, Ryan; kelwyres; Holt, Kathryn E.

kelwyres/Kaptive-Web. (2022) Wick, Ryan; kelwyres; Pan, Alwyn; Stanton, Tom; Watts, Stephen; Lee, Thanh