LSHTM Organisational Structure (3744)

Faculty of Infectious and Tropical Diseases (1003)

Department of Infection Biology (175) Data Creators(s) Title Item Type No Grouping

A

The impact of cognate strategy training on guessing accuracy for unknown visually-presented words: The case of Japanese learners of English. (2022) Allen, David J.

C

francesccoll/powerbacgwas. (2022) Coll, Francesc

D

zadyson/SNV_Stats_Generator. (2022) Dyson, Zoe Anne

Accession numbers and data for S. Typhi sequences used in this study. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Outgroups used for phylogenetic tree rooting. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

katholt/RedDog. (2022) d-j-e, Holt, Kathryn E., Wyres, Kelly L

E

A computational method for predicting the most likely evolutionary trajectories in the stepwise accumulation of resistance mutations. (2022) Eccleston, R. Charlotte, Manko, Emilia, Campino, Susana, Clark, Taane G., Furnham, Nicholas

G

Defining the genes required for survival of Mycobacterium bovis in the bovine host offers novel insights into the genetic basis of survival of pathogenic mycobacteria. (2022) Gibson, Amanda Jane, Stiens, Jennifer, Passmore, Ian J., Faulkner, Valwynne, Miculob, Josephous, Willcocks, Sam, Coad, Michael, Berg, Stefan, Werling, Dirk, Wren, Brendan W, Nobeli, Irene, Villarreal-Ramos, Bernardo, Kendall, Sharon Louise

H

Additional file 1 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Harshegyi, Taylor, Blakeway, Luke, Wick, Ryan R., Jenney, Adam W. J., Holt, Kathryn E.

Additional file 3 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Harshegyi, Taylor, Blakeway, Luke, Wick, Ryan R., Jenney, Adam W. J., Holt, Kathryn E.

Additional file 4 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Harshegyi, Taylor, Blakeway, Luke, Wick, Ryan R., Jenney, Adam W. J., Holt, Kathryn E.

I

Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate. (2022) Ijaz, Umer Zeeshan, Gundogdu, Ozan, Keating, Ciara, Eekert, Miriam van, Gibson, Walter, Parkhill, Julian, Abilahi, Faraji, Liseki, Benard, Nguyen, Viet-Anh, Sudgen, Steven, Quince, Christopher, Ensink, Jeroen H. J., Torondel, Belen, Walker, Alan W.

K

Investigation of Vibrio cholerae pathogenesis using a novel human intestinal model of infection. (2022) Kane, Leanne

L

Campylobacter coli strain, whole genome shotgun sequencing project. (2022) Lehri, Burhan, Navoly, G, Willcocks, Sam, Huong, LQ, Stabler, Richard A

CDC50 interacting partners of Plasmodium falcipraum. (2022) London School of Hygiene & Tropical Medicine

Environmental detection of vector larvae. (2022) London School of Hygiene & Tropical Medicine

M

Table 1 - The role of cholesterol in invasion and growth of malaria parasites. (2022) Maier, Alexander G., Van ooij, Christiaan

N

Campylobacter jejuni interactions with Acanthamoeba castellanii. (2022) Nasher, Fauzy, Lehri, Burhan, Horney, Megan, Stabler, Richard, Wren, Brendan W

O

De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members. (2022) Oresegun, Damilola R., Thorpe, Peter, Benavente, Ernest Diez, Campino, Susana, Muh, Fauzi, Moon, Robert William, Clark, Taane Gregory, Cox-Singh, Janet

Correlation coefficient results for all protein pairs. (2022) Oulton, Tate, Obiero, Joshua, Rodriguez, Isabel, Ssewanyana, Isaac, Dabbs, Rebecca A., Bachman, Christine M., Greenhouse, Bryan, Drakeley, Chris, Felgner, Phil L., Stone, Will J. R., Tetteh, Kevin K. A.

Detail of expressed protein targets. (2022) Oulton, Tate, Obiero, Joshua, Rodriguez, Isabel, Ssewanyana, Isaac, Dabbs, Rebecca A., Bachman, Christine M., Greenhouse, Bryan, Drakeley, Chris, Felgner, Phil L., Stone, Will J. R., Tetteh, Kevin K. A.

P

Supplementary information, CDC50 orthologues in Plasmodium falciparum have distinct roles in merozoite egress and trophozoite maturation. (2022) Patel, Avnish, Nofal, Stephanie D., Blackman, Michael J., Baker, David A.

R

Additional file 2 of Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo, Key, Stephanie, Lindblade, Kim A., Vythilingam, Indra, Drakeley, Chris, Fornace, Kimberly

Additional file 3 of Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo, Key, Stephanie, Lindblade, Kim A., Vythilingam, Indra, Drakeley, Chris, Fornace, Kimberly

Additional file 4 of Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo, Key, Stephanie, Lindblade, Kim A., Vythilingam, Indra, Drakeley, Chris, Fornace, Kimberly

Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo, Key, Stephanie, Lindblade, Kim A., Vythilingam, Indra, Drakeley, Chris, Fornace, Kimberly

S

Repositioning of a Diaminothiazole Series Confirmed to Target the Cyclin-Dependent Kinase CRK12 for Use in the Treatment of African Animal Trypanosomiasis. (2022) Smith, Alasdair, Wall, Richard J, Patterson, Stephen, Rowan, Tim, Rico Vidal, Eva, Stojanovski, Laste, Huggett, Margaret, Hampton, Shahienaz E, Thomas, Michael G, Corpas Lopez, Victoriano, Gillingwater, Kirsten, Duke, Jeff, Napier, Grant, Peter, Rose, Vitouley, Hervé S, Harrison, Justin R, Milne, Rachel, Jeacock, Laura, Baker, Nicola, Davis, Susan H, Simeons, Frederick, Riley, Jennifer, Horn, David, Brun, Reto, Zuccotto, Fabio, Witty, Michael J, Wyllie, Susan, Read, Kevin D, Gilbert, Ian H

AntonS-bio/entropy. (2022) Spadar, Anton

V

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S1 File. (2022) Verboven, Lennert, Phelan, Jody, Heupink, Tim H., Van Rie, Annelies

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S2 File. (2022) Verboven, Lennert, Phelan, Jody, Heupink, Tim H., Van Rie, Annelies

W

Genome details for the simulated-read tests. (2022) Wick, Ryan R., Holt, Kathryn E.

Polypolish: Short-read polishing of long-read bacterial genome assemblies. (2022) Wick, Ryan R., Holt, Kathryn E.

Assembly and polishing details for the real-read tests. (2022) Wick, Ryan R, Holt, Kathryn E

Confusion matrices for the simulated-read tests. (2022) Wick, Ryan R, Holt, Kathryn E

Predictors of assembly quality. (2022) Wick, Ryan R, Holt, Kathryn E

Raw results for the real-read tests. (2022) Wick, Ryan R, Holt, Kathryn E

Raw results for the simulated-read tests. (2022) Wick, Ryan R, Holt, Kathryn E

katholt/Kaptive. (2022) Wick, Ryan, kelwyres, Holt, Kathryn E.

kelwyres/Kaptive-Web. (2022) Wick, Ryan, kelwyres, Pan, Alwyn, Stanton, Tom, Watts, Stephen, Lee, Thanh