Item Type Title No Grouping

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Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. (2024) Natukunda, Agnes, Muchene, Leacky K.

A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. (2024) Tackney, Mia S., Morris, Tim, White, Ian, Leyrat, Clemence, Diaz-Ordaz, Karla, Williamson, Elizabeth

alxsrobert/measles_england_sir. (2024) Robert, Alexis, Suffel, Anne Marie

APHRC-DSE/INSPIRE-Mental-Health-Project_Landscape_Analysis: R Source code. (2024) Momanyi, Reinpeter Ondeyo, Mugotitsa, Bylhah

AndriaMousa/chemoprevention-trial-code. (2024) Mousa, Andria

amrnet/amrnet: AMRnet-v1.0. (2024) Cerdeira, Louise, Sharma, Vandana, Maranga, Mary, Carey, Megan, Dyson, Zoe Anne, Holt, Kathryn E.

ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. (2024) López-jiménez, Ana Teresa

B

bokern/ics_covid. (2024) Bokern, Marleen

C

ciarajudge/EpiFusion. (2024) Judge, Ciara

ciarajudge/EpiFusion_PublicationRepo. (2024) Judge, Ciara

cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris

cfr: Estimate Disease Severity and Case Ascertainment. (2024) Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian

D

dzvoti/r4hces. (2024) dzvoti, Segovia De La Revilla, Lucia, Codd, Tom

DAISIEmainland. (2024) Lambert, Joshua W., Bilderbeek, Richèl, Santos Neves, Pedro

Dataset: NECTAR2 Randomized Controlled Trial. (2024) Drakeley, Chris, Dicko, Alassane, Bousema, Teun

dchodge/rsvmabmat. (2024) Hodgson, David

E

enilles1/DR-Leptospirosis. (2024) Nilles, Eric J., Rees, Eleanor

epiparameterDB: Database of Epidemiological Parameters. (2024) Lambert, Joshua W., Kucharski, Adam J., Tamayo, Carmen

epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models. (2024) Azam, James M., Funk, Sebastian, Finger, Flavio, Kamvar, Zhian N., Gruson, Hugo, Mané, Karim, Gupte, Pratik, Lambert, Joshua W.

esnightingale/vl-disaggregation. (2024) Nightingale, Emily

EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024) Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian

emilycfivian/Intersectionality-in-NSA-interventions-Analytical-code. (2024) Fivian, Emily

epiverse-trace/serofoi. (2024) Domínguez, Nicolás Torres, Gruson, Hugo, Pavlich-Mariscal, Jaime, Gomez, Geraldine, Gámez López, Miguel Enrique, Cucunubá, Zulma M., tracelac, Hartgerink, Chris, Azam, James, ben18785

ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. (2024) De la cruz Libardi, Arturo

epiforecasts/multi-model-information: Publication release. (2024) Sherratt, Katharine, Funk, Sebastian

ehr-lshtm/code-sharing: published_article. (2024) Schultze, Anna, Tazare, John

emmahodcroft/ncov_2021: Release for Geneva Manuscript. (2024) Hodcroft, Emma, Zuber, Moira, Harkins, Elias, Neher, Richard, Wagner, Cassia, Huddleston, John, Bedford, Trevor, Moncla, Louise H, Hadfield, James, fzhang12, Sibley, Thomas, Saleh, Ahmad, falnaji, Xueying, aniafijarczyk, Nezu, Tomoyuki, Müller, Nicola Felix, Gall, Astrid, Brito, Anderson, Villabona Arenas, Ch. Julian, Bell, Sidney, Kozyreva, Varvara, Eren, Puller, Vadim, Han, Alvin X., irak, Rimaz, Hossein, Ghafari, Mahan, Sato, Takeshi, Lee, Hanbin

epiverse-trace/simulist. (2024) Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Tamayo Cuartero, Carmen

F

fkrauer/RSV-VACC-DE. (2024) Krauer, Fabienne

finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.

G

ghr/wnv_casecrossover. (2024) Moirano, Giovenale, Fletcher, Chloe, Semenza, Jan C., Lowe, Rachel

gasparrini/UK-HWfcast. (2024) Mistry, Malcolm, Gasparrini, Antonio

gwenknight/ecdc_data_age_sex. (2024) Waterlow, Naomi, Knight, Gwen

J

joshwlambert/DAISIEprepExtra. (2024) Lambert, Joshua W.

julianmatthewman/Eczema_outcomes_public. (2024) Matthewman, Julian

johntaz/nhs-opt-outs. (2024) Tazare, John, Henderson, Alasdair

K

klebgenomics/Kleborate: v3.0.0. (2024) Ryan Wick, Holt, Kathryn E., marlam89, kelwyres, Maranga, Mary, Petit III, Robert A., da Silva, Anders Goncalves, Deveaud, Eric, Lampa, Samuel, Stanton, Tom

L

LuciaSegovia/FAO-fisheries. (2024) Segovia De La Revilla, Lucia, dzvoti, Codd, Tom

lshtm-tbmg/tbmod-pub-undernutrition. (2024) Clark, Rebecca

LSHTMPathogenSeqLab/malaria-hub. (2024) juuzia, Ngwana-Joseph, Gabrielle

lshtm-vimc/prime. (2024) Abbas, Kaja M., Vaccine Impact, Hadley, Liza

lucy-gf/imd-covid. (2024) Goodfellow, Lucy

M

Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024) Jensen, Henning Tarp folder_zip

ManuelaQuaresma/CSI. (2024) Rubio, Francisco Javier, Quaresma, Manuela, Rachet, Bernard

Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. (2024) Mclean, Estelle

N

nicolacfoster/dcea.ana: ASCENT DCEA. (2024) Foster, Nicola

nextstrain/nextclade. (2024) Aksamentov, Ivan, Neher, Richard, Roemer, Cornelius, mt-gitlocalize, Parker, Anna Anya, Lin, Victor, Sibley, Thomas, Negrón, Daniel Antonio, Nextstrain bot, Anderson, John SJ, Snyk bot, Hodcroft, Emma, Actat, Rubinsteyn, Alex, Grüning, Björn, Tegomoh, Bryan, Chen, Chaoran, Bottoms, Christopher, Maguire, Finlay, Huddleston, John, Lee, Jover, Sanderson, Theo, Harkins, Elias

numberize: Convert Words to Numbers in Multiple Languages. (2024) Hartgerink, Chris, Lambert, Joshua W., Mané, Karim, Gruson, Hugo, Ahadzie, Bankole

O

obrady/CATI_Vietnam. (2024) Brady, Oliver J.

opensafely/covid_collateral_imd. (2024) Costello, Ruth, Henderson, Alasdair

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PierreMasselot/RiskExtrapolation. (2024) Masselot, Pierre, Gasparrini, Antonio

PierreMasselot/Paper--2022--Epidemiology--PM2.5_components: Code for published paper. (2024) Masselot, Pierre

R

rachaelpung/temporal_networks. (2024) Pung, Rachael, Kucharski, Adam J., Firth, Josh, Russell, Timothy W., Rogers, Tim, Lee, Vernon

R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". (2024) Goto, Rie folder_zip

ruwanepi/Uvira_spatiotemporal. (2024) Ratnayake, Ruwan

S

supingling/spc. (2024) Ling, Suping

Synthetic datasets for: "Long-term exposure to PM2.5 and mortality: an analysis of the UK Biobank". (2024) Gasparrini, Antonio, Vanoli, Jacopo

SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. (2024) SLGiHub

sophiemoss/anopheles_popgen. (2024) Moss, Sophie

supingling/colorectal_cancer. (2024) Ling, Suping

Supplementary material for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2024) Nájera Espinosa, Sarah, Hadida, Genevieve, Jelmar Sietsma, Anne, Alae-Carew, Carmelia, Turner, Grace, Green, Rosemary, Picetti, Roberto, Pastorino, Silvia, Scheelbeek, Pauline

shaunkeegan/coinfection_spatial_scaling_paper. (2024) Keegan, Shaun, Fenton, Andy

T

theosanderson/taxonium. (2024) Sanderson, Theo, Kramer, Alex, Goater, Richard, Hinrichs, Angie, L'YI, Sehi, Roemer, Cornelius, Kwon, Sung, Vargha, Koorous

typhoidgenomics/genotyphi. (2024) Holt, Kathryn E., Dyson, Zoe Anne, Hawkey, Jane, flashton2003

thimotei/legacy_nAb_kinetics. (2024) Russell, Timothy W., Kucharski, Adam J.

theosanderson/hospitalmedicines. (2024) Sanderson, Theodore

W

wastewater-informed-covid-forecasting. (2024) Johnson, Kaitlyn E.

williameoswald/surveydesignr. (2024) Oswald, William