Item Type No Grouping

joshwlambert/DAISIEprepExtra. (2024) Lambert, Joshua W.

wastewater-informed-covid-forecasting. (2024) Johnson, Kaitlyn E.

nicolacfoster/dcea.ana: ASCENT DCEA. (2024) Foster, Nicola

LuciaSegovia/FAO-fisheries. (2024) Segovia De La Revilla, Lucia, dzvoti, Codd, Tom

supingling/spc. (2024) Ling, Suping

lshtm-tbmg/tbmod-pub-undernutrition. (2024) Clark, Rebecca

PierreMasselot/RiskExtrapolation. (2024) Masselot, Pierre, Gasparrini, Antonio

rachaelpung/temporal_networks. (2024) Pung, Rachael, Kucharski, Adam J., Firth, Josh, Russell, Timothy W., Rogers, Tim, Lee, Vernon

Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024) Jensen, Henning Tarp folder_zip

Synthetic datasets for: "Long-term exposure to PM2.5 and mortality: an analysis of the UK Biobank". (2024) Gasparrini, Antonio, Vanoli, Jacopo

nextstrain/nextclade. (2024) Aksamentov, Ivan, Neher, Richard, Roemer, Cornelius, mt-gitlocalize, Parker, Anna Anya, Lin, Victor, Sibley, Thomas, Negrón, Daniel Antonio, Nextstrain bot, Anderson, John SJ, Snyk bot, Hodcroft, Emma, Actat, Rubinsteyn, Alex, Grüning, Björn, Tegomoh, Bryan, Chen, Chaoran, Bottoms, Christopher, Maguire, Finlay, Huddleston, John, Lee, Jover, Sanderson, Theo, Harkins, Elias

esnightingale/vl-disaggregation. (2024) Nightingale, Emily

theosanderson/taxonium. (2024) Sanderson, Theo, Kramer, Alex, Goater, Richard, Hinrichs, Angie, L'YI, Sehi, Roemer, Cornelius, Kwon, Sung, Vargha, Koorous

typhoidgenomics/genotyphi. (2024) Holt, Kathryn E., Dyson, Zoe Anne, Hawkey, Jane, flashton2003

julianmatthewman/Eczema_outcomes_public. (2024) Matthewman, Julian

EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024) Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian

emilycfivian/Intersectionality-in-NSA-interventions-Analytical-code. (2024) Fivian, Emily

klebgenomics/Kleborate: v3.0.0. (2024) Ryan Wick, Holt, Kathryn E., marlam89, kelwyres, Maranga, Mary, Petit III, Robert A., da Silva, Anders Goncalves, Deveaud, Eric, Lampa, Samuel, Stanton, Tom

SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. (2024) SLGiHub

Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. (2024) Natukunda, Agnes, Muchene, Leacky K.

A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. (2024) Tackney, Mia S., Morris, Tim, White, Ian, Leyrat, Clemence, Diaz-Ordaz, Karla, Williamson, Elizabeth

R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". (2024) Goto, Rie folder_zip

sophiemoss/anopheles_popgen. (2024) Moss, Sophie

fkrauer/RSV-VACC-DE. (2024) Krauer, Fabienne

dzvoti/r4hces. (2024) dzvoti, Segovia De La Revilla, Lucia, Codd, Tom

bokern/ics_covid. (2024) Bokern, Marleen

ghr/wnv_casecrossover. (2024) Moirano, Giovenale, Fletcher, Chloe, Semenza, Jan C., Lowe, Rachel

gasparrini/UK-HWfcast. (2024) Mistry, Malcolm, Gasparrini, Antonio

thimotei/legacy_nAb_kinetics. (2024) Russell, Timothy W., Kucharski, Adam J.

DAISIEmainland. (2024) Lambert, Joshua W., Bilderbeek, Richèl, Santos Neves, Pedro

ruwanepi/Uvira_spatiotemporal. (2024) Ratnayake, Ruwan

supingling/colorectal_cancer. (2024) Ling, Suping

alxsrobert/measles_england_sir. (2024) Robert, Alexis, Suffel, Anne Marie

theosanderson/hospitalmedicines. (2024) Sanderson, Theodore

ciarajudge/EpiFusion. (2024) Judge, Ciara

ciarajudge/EpiFusion_PublicationRepo. (2024) Judge, Ciara

APHRC-DSE/INSPIRE-Mental-Health-Project_Landscape_Analysis: R Source code. (2024) Momanyi, Reinpeter Ondeyo, Mugotitsa, Bylhah

cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris

cfr: Estimate Disease Severity and Case Ascertainment. (2024) Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian

numberize: Convert Words to Numbers in Multiple Languages. (2024) Hartgerink, Chris, Lambert, Joshua W., Mané, Karim, Gruson, Hugo, Ahadzie, Bankole

PierreMasselot/Paper--2022--Epidemiology--PM2.5_components: Code for published paper. (2024) Masselot, Pierre

ManuelaQuaresma/CSI. (2024) Rubio, Francisco Javier, Quaresma, Manuela, Rachet, Bernard

epiverse-trace/serofoi. (2024) Domínguez, Nicolás Torres, Gruson, Hugo, Pavlich-Mariscal, Jaime, Gomez, Geraldine, Gámez López, Miguel Enrique, Cucunubá, Zulma M., tracelac, Hartgerink, Chris, Azam, James, ben18785

Supplementary material for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2024) Nájera Espinosa, Sarah, Hadida, Genevieve, Jelmar Sietsma, Anne, Alae-Carew, Carmelia, Turner, Grace, Green, Rosemary, Picetti, Roberto, Pastorino, Silvia, Scheelbeek, Pauline

ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. (2024) De la cruz Libardi, Arturo

finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.

epiforecasts/multi-model-information: Publication release. (2024) Sherratt, Katharine, Funk, Sebastian

Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. (2024) Mclean, Estelle

AndriaMousa/chemoprevention-trial-code. (2024) Mousa, Andria

shaunkeegan/coinfection_spatial_scaling_paper. (2024) Keegan, Shaun, Fenton, Andy

amrnet/amrnet: AMRnet-v1.0. (2024) Cerdeira, Louise, Sharma, Vandana, Maranga, Mary, Carey, Megan, Dyson, Zoe Anne, Holt, Kathryn E.

obrady/CATI_Vietnam. (2024) Brady, Oliver J.

ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. (2024) López-jiménez, Ana Teresa

lshtm-vimc/prime. (2024) Abbas, Kaja M., Vaccine Impact, Hadley, Liza

Dataset: NECTAR2 Randomized Controlled Trial. (2024) Drakeley, Chris, Dicko, Alassane, Bousema, Teun

opensafely/covid_collateral_imd. (2024) Costello, Ruth, Henderson, Alasdair

lucy-gf/imd-covid. (2024) Goodfellow, Lucy

ehr-lshtm/code-sharing: published_article. (2024) Schultze, Anna, Tazare, John

gwenknight/ecdc_data_age_sex. (2024) Waterlow, Naomi, Knight, Gwen

emmahodcroft/ncov_2021: Release for Geneva Manuscript. (2024) Hodcroft, Emma, Zuber, Moira, Harkins, Elias, Neher, Richard, Wagner, Cassia, Huddleston, John, Bedford, Trevor, Moncla, Louise H, Hadfield, James, fzhang12, Sibley, Thomas, Saleh, Ahmad, falnaji, Xueying, aniafijarczyk, Nezu, Tomoyuki, Müller, Nicola Felix, Gall, Astrid, Brito, Anderson, Villabona Arenas, Ch. Julian, Bell, Sidney, Kozyreva, Varvara, Eren, Puller, Vadim, Han, Alvin X., irak, Rimaz, Hossein, Ghafari, Mahan, Sato, Takeshi, Lee, Hanbin

johntaz/nhs-opt-outs. (2024) Tazare, John, Henderson, Alasdair

dchodge/rsvmabmat. (2024) Hodgson, David

epiverse-trace/simulist. (2024) Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Tamayo Cuartero, Carmen

williameoswald/surveydesignr. (2024) Oswald, William