Item Type Title No Grouping

Dataset

enilles1/DR-Leptospirosis. (2024) Nilles, Eric J.; Rees, Eleanor

joshwlambert/DAISIEprepExtra. (2024) Lambert, Joshua W.

wastewater-informed-covid-forecasting. (2024) Johnson, Kaitlyn E.

nicolacfoster/dcea.ana: ASCENT DCEA. (2024) Foster, Nicola

LuciaSegovia/FAO-fisheries. (2024) Segovia De La Revilla, Lucia; dzvoti; Codd, Tom

supingling/spc. (2024) Ling, Suping

epiparameterDB: Database of Epidemiological Parameters. (2024) Lambert, Joshua W.; Kucharski, Adam J.; Tamayo, Carmen

lshtm-tbmg/tbmod-pub-undernutrition. (2024) Clark, Rebecca

PierreMasselot/RiskExtrapolation. (2024) Masselot, Pierre; Gasparrini, Antonio

rachaelpung/temporal_networks. (2024) Pung, Rachael; Kucharski, Adam J.; Firth, Josh; Russell, Timothy W.; Rogers, Tim; Lee, Vernon

Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024) Jensen, Henning Tarp folder_zip

LSHTMPathogenSeqLab/malaria-hub. (2024) juuzia; Ngwana-Joseph, Gabrielle

Synthetic datasets for: "Long-term exposure to PM2.5 and mortality: an analysis of the UK Biobank". (2024) Gasparrini, Antonio; Vanoli, Jacopo

nextstrain/nextclade. (2024) Aksamentov, Ivan; Neher, Richard; Roemer, Cornelius; mt-gitlocalize; Parker, Anna Anya; Lin, Victor; Sibley, Thomas; Negrón, Daniel Antonio; Nextstrain bot; Anderson, John SJ; Snyk bot; Hodcroft, Emma; Actat; Rubinsteyn, Alex; Grüning, Björn; Tegomoh, Bryan; Chen, Chaoran; Bottoms, Christopher; Maguire, Finlay; Huddleston, John; Lee, Jover; Sanderson, Theo; Harkins, Elias

epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models. (2024) Azam, James M.; Funk, Sebastian; Finger, Flavio; Kamvar, Zhian N.; Gruson, Hugo; Mané, Karim; Gupte, Pratik; Lambert, Joshua W.

esnightingale/vl-disaggregation. (2024) Nightingale, Emily

theosanderson/taxonium. (2024) Sanderson, Theo; Kramer, Alex; Goater, Richard; Hinrichs, Angie; L'YI, Sehi; Roemer, Cornelius; Kwon, Sung; Vargha, Koorous

typhoidgenomics/genotyphi. (2024) Holt, Kathryn E.; Dyson, Zoe Anne; Hawkey, Jane; flashton2003

julianmatthewman/Eczema_outcomes_public. (2024) Matthewman, Julian

EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024) Abbott, Sam; Hellewell, Joel; Sherratt, Katharine; Gostic, Katelyn; Hickson, Joe; Badr, Hamada S.; DeWitt, Michael; Azam, James M.; EpiForecasts; Funk, Sebastian

emilycfivian/Intersectionality-in-NSA-interventions-Analytical-code. (2024) Fivian, Emily

klebgenomics/Kleborate: v3.0.0. (2024) Ryan Wick; Holt, Kathryn E.; marlam89; kelwyres; Maranga, Mary; Petit III, Robert A.; da Silva, Anders Goncalves; Deveaud, Eric; Lampa, Samuel; Stanton, Tom

SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. (2024) SLGiHub

Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. (2024) Natukunda, Agnes; Muchene, Leacky K.

A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. (2024) Tackney, Mia S.; Morris, Tim; White, Ian; Leyrat, Clemence; Diaz-Ordaz, Karla; Williamson, Elizabeth

R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". (2024) Goto, Rie folder_zip

sophiemoss/anopheles_popgen. (2024) Moss, Sophie

fkrauer/RSV-VACC-DE. (2024) Krauer, Fabienne

dzvoti/r4hces. (2024) dzvoti; Segovia De La Revilla, Lucia; Codd, Tom

bokern/ics_covid. (2024) Bokern, Marleen

ghr/wnv_casecrossover. (2024) Moirano, Giovenale; Fletcher, Chloe; Semenza, Jan C.; Lowe, Rachel

gasparrini/UK-HWfcast. (2024) Mistry, Malcolm; Gasparrini, Antonio

thimotei/legacy_nAb_kinetics. (2024) Russell, Timothy W.; Kucharski, Adam J.

DAISIEmainland. (2024) Lambert, Joshua W.; Bilderbeek, Richèl; Santos Neves, Pedro

ruwanepi/Uvira_spatiotemporal. (2024) Ratnayake, Ruwan

supingling/colorectal_cancer. (2024) Ling, Suping

alxsrobert/measles_england_sir. (2024) Robert, Alexis; Suffel, Anne Marie

theosanderson/hospitalmedicines. (2024) Sanderson, Theodore

ciarajudge/EpiFusion. (2024) Judge, Ciara

ciarajudge/EpiFusion_PublicationRepo. (2024) Judge, Ciara

APHRC-DSE/INSPIRE-Mental-Health-Project_Landscape_Analysis: R Source code. (2024) Momanyi, Reinpeter Ondeyo; Mugotitsa, Bylhah

cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim; Jombart, Thibaut; Bah, Bubacarr; Ahadzie, Bankolé; Mohammed, Nuredin; Degoot, Abdoelnaser M.; Gruson, Hugo; Gupte, Pratik R.; Azam, James M.; Lambert, Joshua W.; Hartgerink, Chris

cfr: Estimate Disease Severity and Case Ascertainment. (2024) Gupte, Pratik R.; Kucharski, Adam J.; Russell, Timothy W.; Lambert, Joshua W.; Gruson, Hugo; Taylor, Tim; Azam, James M.; Degoot, Abdoelnaser M.; Funk, Sebastian

numberize: Convert Words to Numbers in Multiple Languages. (2024) Hartgerink, Chris; Lambert, Joshua W.; Mané, Karim; Gruson, Hugo; Ahadzie, Bankole

PierreMasselot/Paper--2022--Epidemiology--PM2.5_components: Code for published paper. (2024) Masselot, Pierre

ManuelaQuaresma/CSI. (2024) Rubio, Francisco Javier; Quaresma, Manuela; Rachet, Bernard

epiverse-trace/serofoi. (2024) Domínguez, Nicolás Torres; Gruson, Hugo; Pavlich-Mariscal, Jaime; Gomez, Geraldine; Gámez López, Miguel Enrique; Cucunubá, Zulma M.; tracelac; Hartgerink, Chris; Azam, James; ben18785

Supplementary material for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2024) Nájera Espinosa, Sarah; Hadida, Genevieve; Jelmar Sietsma, Anne; Alae-Carew, Carmelia; Turner, Grace; Green, Rosemary; Picetti, Roberto; Pastorino, Silvia; Scheelbeek, Pauline

ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. (2024) De la cruz Libardi, Arturo

finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik; Van Leeuwen, Edwin; Kucharski, Adam; Eggo, Rosalind M.; Gruson, Hugo; Jombart, Thibaut; Valle Campos, Andree; Lambert, Joshua W.

epiforecasts/multi-model-information: Publication release. (2024) Sherratt, Katharine; Funk, Sebastian

Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. (2024) Mclean, Estelle

AndriaMousa/chemoprevention-trial-code. (2024) Mousa, Andria

shaunkeegan/coinfection_spatial_scaling_paper. (2024) Keegan, Shaun; Fenton, Andy

amrnet/amrnet: AMRnet-v1.0. (2024) Cerdeira, Louise; Sharma, Vandana; Maranga, Mary; Carey, Megan; Dyson, Zoe Anne; Holt, Kathryn E.

obrady/CATI_Vietnam. (2024) Brady, Oliver J.

ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. (2024) López-jiménez, Ana Teresa

lshtm-vimc/prime. (2024) Abbas, Kaja M.; Vaccine Impact; Hadley, Liza

Dataset: NECTAR2 Randomized Controlled Trial. (2024) Drakeley, Chris; Dicko, Alassane; Bousema, Teun

opensafely/covid_collateral_imd. (2024) Costello, Ruth; Henderson, Alasdair

lucy-gf/imd-covid. (2024) Goodfellow, Lucy

ehr-lshtm/code-sharing: published_article. (2024) Schultze, Anna; Tazare, John

gwenknight/ecdc_data_age_sex. (2024) Waterlow, Naomi; Knight, Gwen

emmahodcroft/ncov_2021: Release for Geneva Manuscript. (2024) Hodcroft, Emma; Zuber, Moira; Harkins, Elias; Neher, Richard; Wagner, Cassia; Huddleston, John; Bedford, Trevor; Moncla, Louise H; Hadfield, James; fzhang12; Sibley, Thomas; Saleh, Ahmad; falnaji; Xueying; aniafijarczyk; Nezu, Tomoyuki; Müller, Nicola Felix; Gall, Astrid; Brito, Anderson; Villabona Arenas, Ch. Julian; Bell, Sidney; Kozyreva, Varvara; Eren; Puller, Vadim; Han, Alvin X.; irak; Rimaz, Hossein; Ghafari, Mahan; Sato, Takeshi; Lee, Hanbin

johntaz/nhs-opt-outs. (2024) Tazare, John; Henderson, Alasdair

dchodge/rsvmabmat. (2024) Hodgson, David

epiverse-trace/simulist. (2024) Lambert, Joshua; Gruson, Hugo; Kucharski, Adam J.; Tamayo Cuartero, Carmen

williameoswald/surveydesignr. (2024) Oswald, William