Data Collection

Roberts, C, Stott, C and McNulty, T (2024). Keppel - Biometrics Solutions for ODK Ecosystem Tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004433.

Masselot, P and Gasparrini, A (2024). PierreMasselot/RiskExtrapolation. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14076410

Manning, C (2024). Test record for software. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Pung, R, Kucharski, AJ, Firth, J, Russell, TW, Rogers, T and Lee, V (2024). rachaelpung/temporal_networks. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14032212

Jensen, HT (2024). Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004409.

Aksamentov, I, Neher, R, Roemer, C, mt-gitlocalize, Parker, AA, Lin, V, Sibley, T, Negrón, DA, Nextstrain bot, Anderson, JS, Snyk bot, Hodcroft, E, Actat, Rubinsteyn, A, Grüning, B, Tegomoh, B, Chen, C, Bottoms, C, Maguire, F, Huddleston, J, Lee, J, Sanderson, T and Harkins, E (2024). nextstrain/nextclade. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5731501

Sanderson, T, Kramer, A, Goater, R, Hinrichs, A, L'YI, S, Roemer, C, Kwon, S and Vargha, K (2024). theosanderson/taxonium. [Data Collection]. Github. https://github.com/theosanderson/taxonium

Holt, KE, Dyson, ZA, Hawkey, J and flashton2003 (2024). typhoidgenomics/genotyphi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4707613

Abbott, S, Hellewell, J, Sherratt, K, Gostic, K, Hickson, J, Badr, HS, DeWitt, M, Azam, JM, EpiForecasts and Funk, S (2024). EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13828203

Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T (2024). klebgenomics/Kleborate: v3.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13683348

SLGiHub (2024). SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13376619

Natukunda, A and Muchene, LK (2024). Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26558963.v1

Tackney, MS, Morris, T, White, I, Leyrat, C, Diaz-Ordaz, K and Williamson, E (2024). A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6587959.v1

Goto, R (2024). R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004293.

Moss, S (2024). sophiemoss/anopheles_popgen. [Data Collection]. Github. https://github.com/sophiemoss/anopheles_popgen

Krauer, F (2024). fkrauer/RSV-VACC-DE. [Data Collection]. Github. https://github.com/fkrauer/RSV-VACC-DE

dzvoti, Segovia De La Revilla, L and Codd, T (2024). dzvoti/r4hces. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13151206

Mistry, M and Gasparrini, A (2024). gasparrini/UK-HWfcast. [Data Collection]. GitHub. https://github.com/gasparrini/UK-HWfcast

Russell, TW and Kucharski, AJ (2024). thimotei/legacy_nAb_kinetics. [Data Collection]. Github. https://github.com/thimotei/legacy_nAb_kinetics/

Lambert, JW, Bilderbeek, R and Santos Neves, P (2024). DAISIEmainland. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6502547

Ratnayake, R (2024). ruwanepi/Uvira_spatiotemporal. [Data Collection]. Github. https://github.com/ruwanepi/Uvira_spatiotemporal

Robert, A and Suffel, AM (2024). alxsrobert/measles_england_sir. [Data Collection]. Github. https://github.com/alxsrobert/measles_england_sir

Sanderson, T (2024). theosanderson/hospitalmedicines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10493050

Mané, K, Jombart, T, Bah, B, Ahadzie, B, Mohammed, N, Degoot, AM, Gruson, H, Gupte, PR, Azam, JM, Lambert, JW and Hartgerink, C (2024). cleanepi: Clean and Standardize Epidemiological Data. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=cleanepi

Gupte, PR, Kucharski, AJ, Russell, TW, Lambert, JW, Gruson, H, Taylor, T, Azam, JM, Degoot, AM and Funk, S (2024). cfr: Estimate Disease Severity and Case Ascertainment. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=cfr

Hartgerink, C, Lambert, JW, Mané, K, Gruson, H and Ahadzie, B (2024). numberize: Convert Words to Numbers in Multiple Languages. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=numberize

Masselot, P (2024). PierreMasselot/Paper--2022--Epidemiology--PM2.5_components: Code for published paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11210102

Rubio, FJ, Quaresma, M and Rachet, B (2024). ManuelaQuaresma/CSI. [Data Collection]. Github. https://github.com/ManuelaQuaresma/CSI

Domínguez, NT, Gruson, H, Pavlich-Mariscal, J, Gomez, G, Gámez López, ME, Cucunubá, ZM, tracelac, Hartgerink, C, Azam, J and ben18785 (2024). epiverse-trace/serofoi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11095007

De la cruz Libardi, A (2024). ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10998153

Gupte, P, Van Leeuwen, E, Kucharski, A, Eggo, RM, Gruson, H, Jombart, T, Valle Campos, A and Lambert, JW (2024). finalsize: Calculate the Final Size of an Epidemic. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=finalsize

Sherratt, K and Funk, S (2024). epiforecasts/multi-model-information: Publication release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10891376

Mclean, E (2024). Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10887119

Mousa, A (2024). AndriaMousa/chemoprevention-trial-code. [Data Collection]. GitHub. https://github.com/AndriaMousa/chemoprevention-trial-code

Keegan, S and Fenton, A (2024). shaunkeegan/coinfection_spatial_scaling_paper. [Data Collection]. Github. https://github.com/shaunkeegan/coinfection_spatial_scaling_paper

Cerdeira, L, Sharma, V, Maranga, M, Carey, M, Dyson, ZA and Holt, KE (2024). amrnet/amrnet: AMRnet-v1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10810218

Brady, OJ (2024). obrady/CATI_Vietnam. [Data Collection]. Github. https://github.com/obrady/CATI_Vietnam

López-jiménez, AT (2024). ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. [Data Collection]. Github. https://github.com/ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection

Abbas, KM, Vaccine Impact and Hadley, L (2024). lshtm-vimc/prime. [Data Collection]. Github. https://github.com/lshtm-vimc/prime

Drakeley, C, Dicko, A and Bousema, T (2024). Dataset: NECTAR2 Randomized Controlled Trial. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_03d6476c6d/new

Costello, R and Henderson, A (2024). opensafely/covid_collateral_imd. [Data Collection]. Github. https://github.com/opensafely/covid_collateral_imd

Goodfellow, L (2024). lucy-gf/imd-covid. [Data Collection]. Github. https://github.com/lucy-gf/imd-covid

Schultze, A and Tazare, J (2024). ehr-lshtm/code-sharing: published_article. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8277267

Waterlow, N and Knight, G (2024). gwenknight/ecdc_data_age_sex. [Data Collection]. Github. https://github.com/gwenknight/ecdc_data_age_sex

Hodcroft, E, Zuber, M, Harkins, E, Neher, R, Wagner, C, Huddleston, J, Bedford, T, Moncla, LH, Hadfield, J, fzhang12, Sibley, T, Saleh, A, falnaji, Xueying, aniafijarczyk, Nezu, T, Müller, NF, Gall, A, Brito, A, Villabona Arenas, CJ, Bell, S, Kozyreva, V, Eren, Puller, V, Han, AX, irak, Rimaz, H, Ghafari, M, Sato, T and Lee, H (2024). emmahodcroft/ncov_2021: Release for Geneva Manuscript. [Data Collection]. Zenodo, London, United Kingdom. https://doi.org/10.5281/zenodo.10524847

Tazare, J and Henderson, A (2024). johntaz/nhs-opt-outs. [Data Collection]. Github. https://github.com/johntaz/nhs-opt-outs

Hodgson, D (2024). dchodge/rsvmabmat. [Data Collection]. GitHub. https://github.com/dchodge/rsvmabmat

Lambert, J, Gruson, H, Kucharski, AJ and Tamayo Cuartero, C (2024). epiverse-trace/simulist. [Data Collection]. Github. https://github.com/epiverse-trace/simulist

Oswald, W (2024). williameoswald/surveydesignr. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/williameoswald/surveydesignr