Item Type Title No Grouping

Dataset

nicholasdavies/covidm-alpha. (2020) Davies, Nicholas G.

migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020) Fernandez, Miguel Angel Luque; Zivich, Paul; Smith, Matthew James

o2geosocial. (2020) Robert, Alexis; Funk, Sebastian; Kucharski, Adam J.

Open Science during the pandemic. (2020) Besançon, Lonni; Deforet, Maxime; Leyrat, Clemence; Segalas, Corentin; Jiang, Haiting; Masuzzo, Paola

ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020) Colbourn, Tim; Waites, William; Manheim, David; Sturniolo, Simone; Kerr, Cliff C.; Panovska-Griffiths, Jasmina; Colbourn, Greg

johntaz/COVID-Collateral. (2020) Tazare, John

PierreMasselot/Sedimentation_analysis. (2020) Masselot, Pierre

cmmid/pcr-profile. (2020) Hellewell, Joel; Russell, Timothy W.; The SAFER Investigators and Field Study Team; The Crick COVID-19 Consortium; CMMID COVID-19 working group; Beale, Rupert; Kelly, Gavin; Houlihan, Catherine; Nastouli, Eleni; Kucharski, Adam J.

gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata. (2020) Gasparrini, Antonio

Kleborate v2.0.0. (2020) Holt, Kathryn E.; Lam, Margaret; Wick, Ryan

timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020) Hellewell, Joel; Lucas, Tim; Davis, Emma; Abbott, Sam; Gimma, Amy; Thompson, Robin

Testing the buffering hypothesis: breastfeeding problems, cessation and social support. (2020) Page, Abigail E.; Emmott, Emily H; Myers, Sarah

cmmid/pcr_test_trace. (2020) Clifford, Samuel; Quilty, Billy

francescochecchi/aden_covid. (2020) Checchi, Francesco

epiforecasts/rt-comparison-uk-public: v1.0.0. (2020) Sherratt, Katharine

Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020) Thompson, Jennifer

CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020) Nash, Stephen; Thompson, Jennifer; Leurent, Baptiste

LloydChapman/VLSpatiotemporalModelling. (2020) Chapman, Lloyd A. C.

kaitejohnson/School_reopening. (2020) Johnson, Kaitlyn E.

lwyakob/COVIDsaturates. (2020) Yakob, Laith; Nightingale, Emily

gasparrini/2017_lopezbernal_IJE_codedata. (2020) Lopez-Bernal, James; Cummins, Steven; Gasparrini, Antonio

yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; CMMID COVID-19 Working Group; Jit, Mark; Flasche, Stefan; Klepac, Petra

RtD3. (2020) Gibbs, Hamish; Abbott, Sam; Funk, Sebastian

Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. (2020) Greener, Robert

karatsang/rulesbased_logisticregression. (2020) Tsang, Kara K

emilyherrett/qrisk_cprd_gold: QRISK bundle version 2.0. (2020) Herrett, Emily

tomsumner/Latency_Model_Comparison_Public. (2020) Sumner, Tom

projections: Project Future Case Incidence. (2020) Jombart, Thibaut; Nouvellet, Pierre; Bhatia, Sangeeta; Kamvar, Zhian N.; Taylor, Tim; Ghozzi, Stephane

gasparrini/ItalyCOVIDdeath. (2020) Scortichini, Matteo; Schneider dos santos, Rochelle; De' Donato; De Sario, Manuela; Michelozzi, Paola; Davoli, Marina; Masselot, Pierre; Sera, Francesco; Gasparrini, Antonio

cmmid/travel_screening_strategies. (2020) Clifford, Samuel; Quilty, Billy J.; Russell, Timothy W.; Liu, Yang; Chan, Yung-Wai Desmond; Pearson, Carl A. B.; Eggo, Rosalind M.; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; Edmunds, W. John

Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020) Russell, Timothy W.; Golding, Nick; Hellewell, Joel; Abbott, Sam; Pearson, Carl A B; Van zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.; CMMID COVID-19 working group

thimotei/covid_travel_restrictions. (2020) Russell, Timothy W.; Wu, Joseph T; Clifford, Samuel; CMMID COVID-19 working group; Edmunds, W John; Kucharski, Adam J.; Jit, Mark

sbfnk/rbi.helpers. (2020) Funk, Sebastian; Finger, Flavio

idmodelr: Infectious Disease Model Library and Utilities. (2020) Abbott, Sam; Endo, Akira

vaccine-impact/epi_covid. (2020) Abbas, Kaja M.

trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut; Schumacher, Dirk

mquaife/kenya_mixing. (2020) Quaife, Matthew

epiforecasts/covid: Submission release. (2020) Abbott, Sam; Sherratt, Katharine; Funk, Sebastian; Hellewell, Joel

UK Colocation Dashboard. (2020) Gibbs, Hamish; CMMID nCov Working Group; Eggo, Rosalind M.; Grundy, Chris; Kucharski, Adam J.

adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020) Jombart, Thibaut; Kamvar, Zhian N.; Collins, Caitlin; Luštrik, Roman; Beugin, Marie-Pauline; Knaus, Brian J; Solymos, Peter; Mikryukov, Vladimir; Schliep, Klaus; Maié, Tiago; Morkovsky, Libor; Ahmed, Ismail; Cori, Anne; Calboli, Federico; Ewing, RJ; Michaud, Frédéric; DeCamp, Rebecca; Courtiol, Alexandre

epiforecasts/EpiSoon. (2020) Abbott, Sam; Bosse, Nikos; DeWitt, Michael; Rau, Andrea; Chateigner, Aurelien; Mareschal, Sylvain; Hellewell, Joel

epiforecasts/NCoVUtils. (2020) Abbott, Sam; Sherratt, Katharine; Gibbs, Hamish; Finger, Flavio; Campbell, Paul; Hellewell, Joel; Barks, Patrick; Meakin, Sophie; Lee, Haze

Religion, Cooperation, Fertility, and Child Outcomes. (2020) Shaver, John; Power, Eleanor A.; Purzycki, Benjamin Grant; Shenk, Mary K; Bulbulia, Joseph A.; Sear, Rebecca; Sosis, Richard; Watts, Joseph

StefanFlasche/Pneumo_Trans_Inf. (2020) Flasche, Stefan

thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut; Clifford, Samuel; Pearson, Carl A. B. Pearson; Rees, Eleanor; Nightingale, Emily; Procter, Simon; Knight, Gwen

akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020) Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian

cmmid/covid-uk. (2020) Davies, Nicholas G; Kucharski, Adam J.; Eggo, Rosalind M; Gimma, Amy; COVID-19 Working Group; Edmunds, W. John

Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Van zandvoort, Kevin; Jarvis, Christopher

Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel

Social Contact Rates (SOCRATES) Data Tool. (2020) Willem, Lander; Hoang, Van Thang; Funk, Sebastian; Coletti, Pietro; Beutels, Philippe; Hens, Niel

Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Zandvoort, Kevin; Clifford, Samuel; Jarvis, Christopher; Russell, Timothy; Funk, Sebastian; Gibbs, Hamish; Eggo, Rosalind M.; Kucharski, Adam J.; CMMID COVID-19 Working Group; Edmunds, W. John

Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos; Jarvis, Christopher; Russell, Timothy; Munday, James; Kucharski, Adam; Edmunds, W John; Funk, Sebastian; Eggo, Rosalind; Sun, Fiona; Flasche, Stefan; Quilty, Billy; Davies, Nicholas; Liu, Yang; Clifford, Samuel; Klepac, Petra; Jit, Mark; Diamond, Charlie; Gibbs, Hamish; Van Zandvoort, Kevin

cmmid/ringbp. (2020) Hellewell, Joel

Covid 2019 tracker. (2020) Parker, Edward

geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020) Robert, Alexis

Causal Sim code. (2020) Keogh, Ruth; Seaman, Shaun R.; Gran, Jon Michael; Vansteelandt, Stijn

Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). (2020) Willem, Lander; Xiao, Li; Antillon, Marina; Bilcke, Joke; Jit, Mark; Beutels, Philippe

pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel; Kamvar, Zhian N.; Jombart, Thibaut; Brian, Knaus; Frederic, Michaud

Probability of a large 2019-nCoV outbreak following introduction of cases. (2020) Kucharski, Adam J.; Russell, Timothy W.; Diamond, Charlie; CMMID nCoV working group; Funk, Sebastian; Eggo, Rosalind M.

Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020) Clifford, Samuel; Quilty, Billy; CMMID nCoV working group; Pearson, Carl; Flasche, Stefan; Eggo, Rosalind M.