Item Type No Grouping

nicholasdavies/covidm-alpha. (2020) Davies, Nicholas G.

migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020) Fernandez, Miguel Angel Luque, Zivich, Paul, Smith, Matthew James

o2geosocial. (2020) Robert, Alexis, Funk, Sebastian, Kucharski, Adam J.

Open Science during the pandemic. (2020) Besançon, Lonni, Deforet, Maxime, Leyrat, Clemence, Segalas, Corentin, Jiang, Haiting, Masuzzo, Paola

ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020) Colbourn, Tim, Waites, William, Manheim, David, Sturniolo, Simone, Kerr, Cliff C., Panovska-Griffiths, Jasmina, Colbourn, Greg

johntaz/COVID-Collateral. (2020) Tazare, John

PierreMasselot/Sedimentation_analysis. (2020) Masselot, Pierre

cmmid/pcr-profile. (2020) Hellewell, Joel, Russell, Timothy W., The SAFER Investigators and Field Study Team, The Crick COVID-19 Consortium, CMMID COVID-19 working group, Beale, Rupert, Kelly, Gavin, Houlihan, Catherine, Nastouli, Eleni, Kucharski, Adam J.

gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata. (2020) Gasparrini, Antonio

Kleborate v2.0.0. (2020) Holt, Kathryn E., Lam, Margaret, Wick, Ryan

timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020) Hellewell, Joel, Lucas, Tim, Davis, Emma, Abbott, Sam, Gimma, Amy, Thompson, Robin

Testing the buffering hypothesis: breastfeeding problems, cessation and social support. (2020) Page, Abigail E., Emmott, Emily H, Myers, Sarah

cmmid/pcr_test_trace. (2020) Clifford, Samuel, Quilty, Billy

francescochecchi/aden_covid. (2020) Checchi, Francesco

epiforecasts/rt-comparison-uk-public: v1.0.0. (2020) Sherratt, Katharine

Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020) Thompson, Jennifer

CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020) Nash, Stephen, Thompson, Jennifer, Leurent, Baptiste

LloydChapman/VLSpatiotemporalModelling. (2020) Chapman, Lloyd A. C.

kaitejohnson/School_reopening. (2020) Johnson, Kaitlyn E.

lwyakob/COVIDsaturates. (2020) Yakob, Laith, Nightingale, Emily

gasparrini/2017_lopezbernal_IJE_codedata. (2020) Lopez-Bernal, James, Cummins, Steven, Gasparrini, Antonio

yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra

RtD3. (2020) Gibbs, Hamish, Abbott, Sam, Funk, Sebastian

Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. (2020) Greener, Robert

karatsang/rulesbased_logisticregression. (2020) Tsang, Kara K

emilyherrett/qrisk_cprd_gold: QRISK bundle version 2.0. (2020) Herrett, Emily

tomsumner/Latency_Model_Comparison_Public. (2020) Sumner, Tom

projections: Project Future Case Incidence. (2020) Jombart, Thibaut, Nouvellet, Pierre, Bhatia, Sangeeta, Kamvar, Zhian N., Taylor, Tim, Ghozzi, Stephane

gasparrini/ItalyCOVIDdeath. (2020) Scortichini, Matteo, Schneider dos santos, Rochelle, De' Donato, De Sario, Manuela, Michelozzi, Paola, Davoli, Marina, Masselot, Pierre, Sera, Francesco, Gasparrini, Antonio

cmmid/travel_screening_strategies. (2020) Clifford, Samuel, Quilty, Billy J., Russell, Timothy W., Liu, Yang, Chan, Yung-Wai Desmond, Pearson, Carl A. B., Eggo, Rosalind M., Endo, Akira, CMMID COVID-19 Working Group, Flasche, Stefan, Edmunds, W. John

Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020) Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group

thimotei/covid_travel_restrictions. (2020) Russell, Timothy W., Wu, Joseph T, Clifford, Samuel, CMMID COVID-19 working group, Edmunds, W John, Kucharski, Adam J., Jit, Mark

sbfnk/rbi.helpers. (2020) Funk, Sebastian, Finger, Flavio

idmodelr: Infectious Disease Model Library and Utilities. (2020) Abbott, Sam, Endo, Akira

vaccine-impact/epi_covid. (2020) Abbas, Kaja M.

trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut, Schumacher, Dirk

mquaife/kenya_mixing. (2020) Quaife, Matthew

epiforecasts/covid: Submission release. (2020) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel

UK Colocation Dashboard. (2020) Gibbs, Hamish, CMMID nCov Working Group, Eggo, Rosalind M., Grundy, Chris, Kucharski, Adam J.

adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020) Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre

epiforecasts/EpiSoon. (2020) Abbott, Sam, Bosse, Nikos, DeWitt, Michael, Rau, Andrea, Chateigner, Aurelien, Mareschal, Sylvain, Hellewell, Joel

epiforecasts/NCoVUtils. (2020) Abbott, Sam, Sherratt, Katharine, Gibbs, Hamish, Finger, Flavio, Campbell, Paul, Hellewell, Joel, Barks, Patrick, Meakin, Sophie, Lee, Haze

Religion, Cooperation, Fertility, and Child Outcomes. (2020) Shaver, John, Power, Eleanor A., Purzycki, Benjamin Grant, Shenk, Mary K, Bulbulia, Joseph A., Sear, Rebecca, Sosis, Richard, Watts, Joseph

StefanFlasche/Pneumo_Trans_Inf. (2020) Flasche, Stefan

thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen

akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020) Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian

cmmid/covid-uk. (2020) Davies, Nicholas G, Kucharski, Adam J., Eggo, Rosalind M, Gimma, Amy, COVID-19 Working Group, Edmunds, W. John

Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher

Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel

Social Contact Rates (SOCRATES) Data Tool. (2020) Willem, Lander, Hoang, Van Thang, Funk, Sebastian, Coletti, Pietro, Beutels, Philippe, Hens, Niel

Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John

Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin

cmmid/ringbp. (2020) Hellewell, Joel

Covid 2019 tracker. (2020) Parker, Edward

geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020) Robert, Alexis

Causal Sim code. (2020) Keogh, Ruth, Seaman, Shaun R., Gran, Jon Michael, Vansteelandt, Stijn

Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). (2020) Willem, Lander, Xiao, Li, Antillon, Marina, Bilcke, Joke, Jit, Mark, Beutels, Philippe

pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud

Probability of a large 2019-nCoV outbreak following introduction of cases. (2020) Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.

Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020) Clifford, Samuel, Quilty, Billy, CMMID nCoV working group, Pearson, Carl, Flasche, Stefan, Eggo, Rosalind M.