Keywords
Number of items: 130.
vaccine-impact/epi_covid. (2020)
Abbas, Kaja M.
epiforecasts/EpiSoon. (2020)
Abbott, Sam; Bosse, Nikos; DeWitt, Michael; Rau, Andrea; Chateigner, Aurelien; Mareschal, Sylvain; Hellewell, Joel
epiforecasts/covid19.sgene.utla.rt. (2021)
Abbott, Sam; Funk, Sebastian
martyn1fyles/HouseholdContactTracing. (2021)
Abbott, Sam; Fyles, Martyn
thimotei/legacy_ct_modelling: Final version. (2023)
Abbott, Sam; Russell, Timothy W.; Hellewell, Joel; Kucharski, Adam J.
epiforecasts/NCoVUtils. (2020)
Abbott, Sam; Sherratt, Katharine; Gibbs, Hamish; Finger, Flavio; Campbell, Paul; Hellewell, Joel; Barks, Patrick; Meakin, Sophie; Lee, Haze
Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. (2021)
Adetifa, Ifedayo M. O.; Uyoga, Sophie; Gitonga, John N.; Mugo, Daisy; Otiende, Mark; Nyagwange, James; Karanja, Henry K.; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng’ang’a, Wangari; Rombo, Charles; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W.; Gallagher, Katherine E.; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Bejon, Philip; Ochola-Oyier, Lynette I.; Agweyu, Ambrose; Scott, J. Anthony G.; Warimwe, George M.
SARS-CoV-2 variants-associated outbreaks of COVID-19 in a tertiary institution, North-Central Nigeria: Implications for epidemic control. S1 Data. (2023)
Adeyemi, Oluwapelumi Olufemi; Ndodo, Nnaemeka Darlington; Sulaiman, Mariam Kehinde; Ayansola, Oyeronke Temidayo; Buhari, Oluwabunmi Idera Nimat; Akanbi, Olusola Anuoluwapo; Bolarinwa, Oladimeji Akeem; Chukwu, Chimaobi; Joel, Ireoluwa Yinka; Omoare, Adesuyi Ayodeji; Wahab, Kolawole Wasiu; Obiekea, Celestina; Buhari, Mikhail Olayinka; Ahumibe, Anthony; Kolawole, Caroline Folasade; Okoi, Catherine; Omotesho, Olumuyiwa Babagbemi; Mba, Nwando; Adeniyi, Oluwafemi; Babatunde, Olajumoke; Akintunde, Nathaniel; Ayinla, Ganiu; Akande, Oluwatosin Wuraola; Odunola, Rasheed Adekeye; Saka, Mohammed Jimoh; Musa, Omotosho Ibrahim; Durotoye, Idayat Adenike; Ihekweazu, Chikwe; Adetifa, Ifedayo Morayo; Fadeyi, Abayomi
Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020)
Aldridge, Robert W.; Lewer, Dan; Beale, Sarah; Johnson, Anne M.; Zambon, Maria; Hayward, Andrew C.; Fragaszy, Ellen
Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: a serological study of seven thousand blood donors. (2024)
Alexander, Neal; Dye, Christopher; Busch, Michael P.; Buss, Lewis; Prete Jr, Carlos A.; Brady, Oliver J.; Mee, Paul; Abrahim, Claudia M. M.; Crispim, Myuki A. E.; da Costa, Allyson G.; Salomon, Tassila; Mayaud, Philippe; Oikawa, Márcio K.; Faria, Nuno; Sabino, Ester C.
Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. (2021)
Assefa, Nega; Demissie, Lemma; Teklemarriam, Zelalem; Oundo, Joseph O.; Madrid, Lola; Dessie, Yadeta; Scott, J. Anthony G.
rosannaclairebarnard/covidm-mtd-Omi. (2022)
Barnard, Rosanna C.
Parents’ and guardians’ views and experiences of accessing routine childhood vaccinations in England during the coronavirus (COVID-19) pandemic: cross-sectional survey and qualitative interview data. (2020)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline
Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. (2020)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline
opensafely/covid-vs-noncovid-deaths-research. (2021)
Bhaskaran, Krishnan; Inglesby, Peter
christian-bottomley/mixture_model_sarscov2. (2021)
Bottomley, Christian
KITmetricslab/covid19-forecast-hub-de. (2021)
Bracher, J.; Wolffram, D.; Deuschel, J.; Görgen, K.; Ketterer, J.L.; Ullrich, A.; Abbott, Sam; Barbarossa, M.V.; Bertsimas, D.; Bhatia, S.; Bodych, M.; Bosse, Nikos I.; Burgard, J.P.; Castro, L.; Fairchild, G.; Fuhrmann, J.; Funk, Sebastian; Gogolewski, K.; Gu, Q.; Heyder, S.; Hotz, T.; Kheifetz, Y.; Kirsten, H.; Krueger, T.; Krymova, E.; Li, M.L.; Meinke, J.H.; Michaud, I.J.; Niedzielewski, K.; Ożański, T.; Rakowski, F.; Scholz, M.; Soni, S.; Srivastava, A.; Zieliński, J.; Zou, D.; Gneiting, T.; Schienle, M.
ojal/KenyaSerology. (2021)
Brand, Samuel; Ojal, John
Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Lesotho data. (2023)
Bresser, M; Erhardt, R.M.; Shanaube, K.; Simwinga, M; Mahlatsi, P.A.; Belus, J.; Schaap, Ab; Amstutz, A.; Gachie, Thomas; Glass, T.R.; Kangolo, B.; Mota, M.J.; Floyd, Sian; Katende, B.; Klinkenberg, E.; Ayles, Helen; Reither, K.; Ruperez, M.
Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Zambia data. (2023)
Bresser, M; Erhardt,, R.M.; Shanaube, K; Simwinga, M; Mahlatsi, P.A.; Belus, J; Schaap, Ab; Amstutz, A; Gachie, Thomas; Glass, T.R.; Kangolo, B; Mota, M.J.; Floyd, Sian; Katende, B; Klinkenberg, E; Ayles, Helen; Reither, K; Ruperez, M
rachaelmburke/tbcovidblantyre. (2021)
Burke, Rachael
Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil. (2022)
Cerqueira-Silva, Thiago; de Araujo Oliveira, Vinicius; Paixão, Enny S.; Júnior, Juracy Bertoldo; Penna, Gerson O.; Werneck, Guilherme L.; Pearce, Neil; Barreto, Maurício L.; Boaventura, Viviane S.; Barral-Netto, Manoel
LloydChapman/COVID_homeless_modelling. (2021)
Chapman, Lloyd A. C.
francescochecchi/aden_covid. (2020)
Checchi, Francesco
francescochecchi/mortality_capture_recapture_analysis. (2022)
Checchi, Francesco
Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. (2023)
Clifford, Samuel; Hackman, Jada
cmmid/pcr_test_trace. (2020)
Clifford, Samuel; Quilty, Billy
Social contact data from CoMix survey (Belgium). (2020)
Coletti, Pietro; Wambua, James; Gimma, Amy; Willem, Lander; Vercruysse, Sarah; Vanhoutte, Bieke; Jarvis, Christopher I; Van Zandvoort, Kevin; Edmunds, John; Beutels, Philippe; Hens, Niel
CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.
cmmid/covid-age. (2020)
Davies, Nicholas G.
nicholasdavies/covidm-alpha. (2020)
Davies, Nicholas G.
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021)
Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021)
Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John
Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.; Jarvis, Christopher I.; CMMID COVID-19 Working Group; Edmunds, W. John; Jewell, Nicholas P.; Diaz-Ordaz, Karla; Keogh, Ruth H.
cmmid/covid-uk. (2020)
Davies, Nicholas G; Kucharski, Adam J.; Eggo, Rosalind M; Gimma, Amy; COVID-19 Working Group; Edmunds, W. John
Global intent to accept COVID-19 vaccines. (2021)
De Figueiredo, Alex
Impact of vaccine passports on inclination to accept COVID-19 vaccinations in the UK. (2021)
De figueiredo, Alex
Additional file 1 of Characterising social contacts under COVID-19 control measures in Africa. (2022)
Dobreva, Zlatina; Gimma, Amy; Rohan, Hana; Djoudalbaye, Benjamin; Tshangela, Akhona; Jarvis, Christopher I.; Van Zandvoort, Kevin; Quaife, Matthew
Wastewater surveillance overcomes socio-economic limitations of laboratory-based surveillance when monitoring disease transmission: the South African experience during the COVID-19 pandemic. (2025)
Els, Fiona; Maree, Gillian; Naidoo, Yashena; Naidoo, Laven; Mahamuza, Phemelo; Macheke, Mokgaetji; Ndlovu, Nkosenhle; Iwu-Jaja, Chinwe; Taukobong, Setshaba; Maposa, Sibonginkosi; O'reilly, Kathleen M.; Yousif, Mukhlid; McCarthy, Kerrigan; Rachida, Said
Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
akira-endo/COVID19_backwardtracing. (2020)
Endo, Akira; Kucharski, Adam J.
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. (2020)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
description
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. (2021)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
epiforecasts/ons_severity_estimates. (2022)
Funk, Sebastian
Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. (2021)
Gaskell, Katherine M.; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy h.; Goldblatt, David; Eggo, Rosalind M.; Marks, Michael
cmmid/uk_movement_communities_covid. (2021)
Gibbs, Hamish
Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. (2021)
Gibbs, Hamish; Waterlow, Naomi R.; Cheshire, James; Danon, Leon; Liu, Yang; Grundy, Chris; Kucharski, Adam J.; Eggo, Rosalind M.
Data supporting "A Snapshot of the Practicality of, and Barriers to, Implementation of COVID-19 Interventions: Public Health and Healthcare Workers' Perceptions". (2021)
Glazik, Rosanna
description
grahams99/Enhanced_surveillance_questionnaire. (2023)
Graham, Sophie
Community engagement in the prevention and control of COVID-19: Insights from Vietnam. Qualitative transcripts. (2021)
Ha, Bui Thi Thu; Ngoc Quang, La; Quoc Thanh, Pham; Duc, Duong Minh; Mirzoev, Tolib; Bui, Thi My Anh
timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020)
Hellewell, Joel; Lucas, Tim; Davis, Emma; Abbott, Sam; Gimma, Amy; Thompson, Robin
cmmid/pcr-profile. (2020)
Hellewell, Joel; Russell, Timothy W.; The SAFER Investigators and Field Study Team; The Crick COVID-19 Consortium; CMMID COVID-19 working group; Beale, Rupert; Kelly, Gavin; Houlihan, Catherine; Nastouli, Eleni; Kucharski, Adam J.
dchodge/hero-study: Version submitted with WOR reviewers comments. (2022)
Hodgson, David; Abbott, Sam
Circulation of respiratory viruses during the COVID-19 pandemic in the Gambia. (2022)
Jarju, Sheikh; Senghore, Elina; Brotherton, Helen; Saidykhan, Alasana; Jallow, Samba; Krubally, Ebrima; Sinjanka, Edrisa; Ndene, Morris Ngor; Bajo, Fabakary; Sanyang, Musa M; Saidy, Binta; Bah, Alasana; Mohammed, Nuredin I; Forrest, Karen; Clarke, Ed; Dalessandro, Umberto; Sesay, Abdul Karim; Usuf, Effua; Cerami, Carla; Roca, Anna; Kampmann, Beate; De silva, Thushan
jarvisc1/comix_uk_covid_restrictions. (2021)
Jarvis, Christopher
Inferring COVID-19 cases from recent death. (2020)
Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Van zandvoort, Kevin; Jarvis, Christopher
Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. (2021)
Kitonsa, Jonathan; Kamacooko, Onesmus; Bahemuka, Ubaldo M.; Kibengo, Freddie; Kakande, Ayoub; Wajja, Anne; Basajja, Vincent; Lumala, Alfred; Ssemwanga, Edward; Asaba, Robert; Mugisha, Joseph; Pierce, Benjamin F.; Shattock, Robin; Kaleebu, Pontiano; Ruzagira, Eugene
description
gwenknight/hai_first_wave. (2021)
Knight, Gwen
SARS-CoV-2 Seroprevalence in Kenya dataset. (2024)
Koech, Angela; Omuse, Geoffrey; Mugo, Alex; Mwaniki, Isaac; Mutunga, Joseph; Mukhanya, Moses; Wanje, Onesmus; Mwashigadi, Grace; Katana, Geoffrey; Craik, Rachel; Von Dadelszen, Peter; Le Doare, Kirsty; Temmermen, Marleen; The PRECISE Network
description
Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". (2021)
Koltai, Mihaly
mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021)
Koltai, Mihaly
adamkucharski/covid-import-model. (2021)
Kucharski, Adam J.
Replication Data for: Comparative performance of the InBios SCoV-2 DetectTM IgG ELISA and the in-house KWTRP ELISA in detecting SARS-CoV-2 spike IgG antibodies in Kenyan populations. (2023)
Kutima, Bernadette; Kagucia, Wangeci; Mwai, Kennedy; Kimani, Makobu; Sigilai, Antipa; Mugo, Daisy; Karani, Kenneth; Akech, Donald; Toroitich, Monica; Karia, Boniface; Tuju, James; Ziraba, Abdhalah K.; Bigogo, Godfrey; Ochieng, Caroline; Onyango, Clayton; Lidechi, Shirley; Munywoki, Patrick K.; Uyoga, Sophie; Adetifa, Ifedayo M. O.; Ochola-Oyier, Lynette I.; Bejon, Philip; Scott, J. Anthony G.; Agweyu, Ambrose; Warimwe, George M.; Nyagwange, James
Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. (2021)
Laban, Natasha
COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020)
Lazarus, Jeffrey V.; Ratzan, Scott; Palayew, Adam; Billari, Francesco C.; Binagwaho, Agnes; Kimball, Spencer; Larson, Heidi J.; Melegaro, Alessia; Rabin, Kenneth; White, Trenton M.; El-Mohandes, Ayman
qleclerc/COVID_bed_occupancy. (2021)
Leclerc, Quentin J.
COVID19 settings of transmission - collected reports database. (2020)
Leclerc, Quentin J.; Fuller, Naomi M.; Knight, Lisa E.; Funk, Sebastian; Knight, Gwenan M.
Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021)
Lindsey, Benjamin B.; Villabona-Arenas, Christian Julian; Atkins, Katherine E.; Campbell, Finlay
yangclaraliu/COVID19_NPIs_vs_Rt. (2020)
Liu, Yang
yangclaraliu/COVID_Vac_Delay. (2022)
Liu, Yang
yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020)
Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; CMMID COVID-19 Working Group; Jit, Mark; Flasche, Stefan; Klepac, Petra
yangclaraliu/covid_vac_africa: BMCMed_R3. (2023)
Liu, Yang; Procter, Simon R; Pearson, Carl A. B.; Madriz Montero, Andres; Torres-Rueda, Sergio; Asfaw, Elias; Uzochukwu, Benjamin; Drake, Tom; Bergren, Eleanor; Eggo, Rosalind M.; Ruiz, Francis; Ndembi, Nicaise; Nonvignon, Justice; Jit, Mark; Vassall, Anna
Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021)
Liu, Yang; Sandmann, Frank G.; Barnard, Rosanna C.; Pearson, Carl A.B.; CMMID Working-19 Working Group; Pastore, Roberta; Pebody, Richard; Flasche, Stefan; Jit, Mark
Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021)
Lovell-Read, Francesca A.; Funk, Sebastian; Obolski, Uri; Donnelly, Christl A.; Thompson, Robin N.
opensafely/post-covid-kidney-outcomes. (2025)
Mahalingasivam, Viyaasan; Zheng, Bang; lshbz1; Dillingham, Iain
Paul-Mee/clic_brazil. (2021)
Mee, Paul; Alexander, Neal; Colón-González, Felipe J
jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021)
Munday, James D.
jdmunday/CoMix_schools_reopening. (2021)
Munday, James D.; Jarvis, Christopher I.
CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021)
Munday, James D; Jarvis, Christopher I.; Gimma, Amy; Wong, Kerry L; van Zandvoort, Kevin; Funk, Sebastian; Edmunds, W. John
COVID-19 length of hospital stay. (2020)
Nightingale, Emily; Waterlow, Naomi; Clifford, Samuel; Rees, Eleanor
enilles1/immunoepidemiology. (2024)
Nilles, Eric J.; Kucharski, Adam J.
kath-o-reilly/wbe_prevalence_england_python. (2022)
O'Reilly, Kathleen M.
Online survey questions: Social, ethical and behavioural aspects of COVID-19. (2020)
Osterrieder, Anne; Poomchaichote, Tassawan; Cuman, Giulia; Pan-ngum, Wirichada; Cheah, Phee-Kheng; Waithira, Naomi; Mukaka, Mavuto; Naemiratch, Bhensri; Kulpijit, Natinee; Chanviriyavuth, Rita; Asarath, Supa-at; Ruangkajorn, Supanat; Silan, Margherita; Stoppa, Silvia; Zuanna, Gianpiero Della; Cheah, Phaik Kin; Ongkili, Darlene; Schneiders, Mira; Mackworth-Young, Constance R.S.; Cheah, Phaik Yeong
covidregionaldata: Subnational data for COVID-19 epidemiology. (2021)
Palmer, Joseph; Sherratt, Katharine; Martin-Nielsen, Richard; Bevan, Jonnie; Gibbs, Hamish; CMMID COVID-19 Working Group; Funk, Sebastian; Abbott, Sam
vac-lshtm/VaC_tracker. (2021)
Parker, Edward
opensafely/ckd-coverage-ve. (2022)
Parker, Edward; Horne, Elsie
Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021)
Pavelka, Martin; van Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Jarcuska, Pavel; Krajci, Marek; Flasche, Stefan; Funk, Sebastian
PROTECT initiative extended Covid-19 occupational questionnaire. (2021)
Pearce, Neil
Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021)
Pearson, Carl A B; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; Eggo, Rosalind M; Vassall, Anna; Jit, Mark
cmmid/covidTestVac. (2021)
Pearson, Carl A. B.
cmmid/SA2UK. (2021)
Pearson, Carl A. B.; Russell, Timothy W.; Kucharski, Adam J.
tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023)
Pillai, Alexander N.; Hladish, Thomas; Pearson, Carl A. B.; Toh, Ben; Noah4944; Stoltzfus, Arlin
kieshaprem/synthetic-contact-matrices. (2021)
Prem, Kiesha
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel
rachaelpung/covid_missed_infections. (2023)
Pung, Rachael
rachaelpung/cruise_networks. (2022)
Pung, Rachael
rachaelpung/serial_interval_covid_b.1.617.2. (2021)
Pung, Rachael
mquaife/kenya_mixing. (2020)
Quaife, Matthew
cmmid/covid_quar_test_import_risk. (2021)
Quilty, Billy
cmmid/quar_test_contact_tracing. (2021)
Quilty, Billy
R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". (2021)
Quilty, Billy J; Hellewell, Joel; Clifford, Samuel; CMMID COVID-19 working group
description
Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020)
Rees, Eleanor M.; Nightingale, Emily S.; Jafari, Yalda; Waterlow, Naomi R.; Clifford, Samuel; B. Pearson, Carl A.; CMMID Working Group; Jombart, Thibaut; Procter, Simon R.; Knight, Gwenan M.
Data for: "Vaccine Confidence and Hesitancy at the start of COVID-19 vaccine deployment in the UK: An embedded mixed-methods study". (2021)
Roberts, Chrissy; Brindle, Hannah; Rogers, Nina; Eggo, Rosalind M.; Enria, Luisa; Lees, Shelley
description
rmjlros/COVID19_care_home_NPIs. (2021)
Rosello, Alicia; Abbott, Sam; Barnard, Rosanna C.
Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". (2023)
Russell, Timothy W.
Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020)
Russell, Timothy W.; Golding, Nick; Hellewell, Joel; Abbott, Sam; Pearson, Carl A B; Van zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.; CMMID COVID-19 working group
thimotei/legacy_nAb_kinetics. (2024)
Russell, Timothy W.; Kucharski, Adam J.
Processed INSDC dataset for MOV analysis. (2023)
Sanderson, Theo
theosanderson/molnupiravir. (2023)
Sanderson, Theo; Ruis, Chris
gasparrini/ItalyCOVIDdeath. (2020)
Scortichini, Matteo; Schneider dos santos, Rochelle; De' Donato; De Sario, Manuela; Michelozzi, Paola; Davoli, Marina; Masselot, Pierre; Sera, Francesco; Gasparrini, Antonio
fsera/COVIDWeather. (2021)
Sera, Francesco; Abbott, Sam; Roye, Dominic
epiforecasts/rt-comparison-uk-public: v1.0.0. (2020)
Sherratt, Katharine
covid19-forecast-hub-europe/euro-hub-ensemble: Zenodo release. (2022)
Sherratt, Katharine; Funk, Sebastian
DidDrog11/smoking_covid_bayes. (2021)
Simons, David
The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 11) - Data. (2021)
Simons, David; Shahab, Lion; Brown, Jamie; Perski, Olga
The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 9) - Data. (2020)
Simons, David; Shahab, Lion; Brown, Jamie; Perski, Olga
STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021)
Strongman, Helen; Carreira, Helena
folder_zip
Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. (2021)
Uyoga, Sophie; Adetifa, Ifedayo M.O.; Otiende, Mark; Gitonga, John N.; Mugo, Daisy; Nyagwange, James; Karanja, Henry Kibe; Tuju, James; Makale, Johnstone; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng’ang’a, Wangari; Chege, Evelynn; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W.; Gallagher, Katherine E.; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Mwangangi, Joseph; Bejon, Philip; Ochola-Oyier, Lynette I.; Warimwe, George M.; Agweyu, Ambrose; Scott, J. Anthony G.
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin; Stark, Ariane; Evan Ray; Bosse, Nikos; Reich, Nicholas G; Sherratt, Katharine; Shah, Apurv; Wattanachit, Nutcha; Khoale1096; Huang, Yuxin David; Gerding, Aaron; Gruson, Hugo; Cramer, Estee; Shandross, Li; Abbott, Sam; Funk, Sebastian
cmmid/coronavirus_immunity. (2021)
Waterlow, Naomi R.; Van Leeuwen, Edwin; Davies, Nicholas; Flasche, Stefan; Eggo, Rosalind M.
Social Contact Rates (SOCRATES) Data Tool. (2020)
Willem, Lander; Hoang, Van Thang; Funk, Sebastian; Coletti, Pietro; Beutels, Philippe; Hens, Niel
Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission. (2022)
Woodhouse, Mark; Aspinall, Willy; Sparks, RSJ; Brooks-Pollock, Ellen; Relton, Caroline L.
Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread. (2021)
Wu, Joseph T.; Mei, Shujiang; Luo, Sihui; Leung, Kathy; Liu, Di; Lv, Qiuying; Liu, Jian; Li, Yuan; Prem, Kiesha; Jit, Mark; Weng, Jianping; Feng, Tiejian; Zheng, Xueying; Leung, Gabriel M.
lwyakob/COVIDquarantine. (2021)
Yakob, Laith
lwyakob/COVIDsaturates. (2020)
Yakob, Laith; Nightingale, Emily
Anaphylaxis events following COVID-19 antiviral and neutralising monoclonal antibody treatment for non-hospitalised patients. (2023)
Zheng, Bang
Data supporting "Temporal trends of SARS-CoV-2 exposure in adolescents: a longitudinal pilot study nested in a Uganda birth cohort". (2025)
Zirimenya, Ludoviko; Natukunda, Agnes; Nassuna, Jacent; Nkurunungi, Gyaviira; Elliott, Alison M.; Webb, Emily
description
covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022)
actions-user; Sherratt, Katharine; Gruson, Hugo; Funk, Sebastian; Bracher, Johannes; BIOCOM-SC; Walraven, Robert; miraanto; h-veronika; Rodiah, Isti; gr3gr3; Kraus, David; hgurung-iem; epiforecasts-bot; Xu, Frost Tianjian; Heyder, Stefan; aniruddhadiga; Abbott, Sam; Sun, Tao; Mingio, Marco; Deuschel, Jannik; pmontman; janezz25; neele-itwm; Gibson, Graham; EpiGraph; Tarantino, Barbara; Karlen, Dean; Bhatia, Sangeeta; borjarv