Data Creators(s) Item Type No Grouping

vaccine-impact/epi_covid. (2020) Abbas, Kaja M.

epiforecasts/EpiSoon. (2020) Abbott, Sam, Bosse, Nikos, DeWitt, Michael, Rau, Andrea, Chateigner, Aurelien, Mareschal, Sylvain, Hellewell, Joel

epiforecasts/covid19.sgene.utla.rt. (2021) Abbott, Sam, Funk, Sebastian

martyn1fyles/HouseholdContactTracing. (2021) Abbott, Sam, Fyles, Martyn

thimotei/legacy_ct_modelling: Final version. (2023) Abbott, Sam, Russell, Timothy W., Hellewell, Joel, Kucharski, Adam J.

epiforecasts/NCoVUtils. (2020) Abbott, Sam, Sherratt, Katharine, Gibbs, Hamish, Finger, Flavio, Campbell, Paul, Hellewell, Joel, Barks, Patrick, Meakin, Sophie, Lee, Haze

Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. (2021) Adetifa, Ifedayo M. O., Uyoga, Sophie, Gitonga, John N., Mugo, Daisy, Otiende, Mark, Nyagwange, James, Karanja, Henry K., Tuju, James, Wanjiku, Perpetual, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Rombo, Charles, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Bejon, Philip, Ochola-Oyier, Lynette I., Agweyu, Ambrose, Scott, J. Anthony G., Warimwe, George M.

SARS-CoV-2 variants-associated outbreaks of COVID-19 in a tertiary institution, North-Central Nigeria: Implications for epidemic control. S1 Data. (2023) Adeyemi, Oluwapelumi Olufemi, Ndodo, Nnaemeka Darlington, Sulaiman, Mariam Kehinde, Ayansola, Oyeronke Temidayo, Buhari, Oluwabunmi Idera Nimat, Akanbi, Olusola Anuoluwapo, Bolarinwa, Oladimeji Akeem, Chukwu, Chimaobi, Joel, Ireoluwa Yinka, Omoare, Adesuyi Ayodeji, Wahab, Kolawole Wasiu, Obiekea, Celestina, Buhari, Mikhail Olayinka, Ahumibe, Anthony, Kolawole, Caroline Folasade, Okoi, Catherine, Omotesho, Olumuyiwa Babagbemi, Mba, Nwando, Adeniyi, Oluwafemi, Babatunde, Olajumoke, Akintunde, Nathaniel, Ayinla, Ganiu, Akande, Oluwatosin Wuraola, Odunola, Rasheed Adekeye, Saka, Mohammed Jimoh, Musa, Omotosho Ibrahim, Durotoye, Idayat Adenike, Ihekweazu, Chikwe, Adetifa, Ifedayo Morayo, Fadeyi, Abayomi

Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020) Aldridge, Robert W., Lewer, Dan, Beale, Sarah, Johnson, Anne M., Zambon, Maria, Hayward, Andrew C., Fragaszy, Ellen

Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: a serological study of seven thousand blood donors. (2024) Alexander, Neal, Dye, Christopher, Busch, Michael P., Buss, Lewis, Prete Jr, Carlos A., Brady, Oliver J., Mee, Paul, Abrahim, Claudia M. M., Crispim, Myuki A. E., da Costa, Allyson G., Salomon, Tassila, Mayaud, Philippe, Oikawa, Márcio K., Faria, Nuno, Sabino, Ester C.

Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. (2021) Assefa, Nega, Demissie, Lemma, Teklemarriam, Zelalem, Oundo, Joseph O., Madrid, Lola, Dessie, Yadeta, Scott, J. Anthony G.

rosannaclairebarnard/covidm-mtd-Omi. (2022) Barnard, Rosanna C.

Parents’ and guardians’ views and experiences of accessing routine childhood vaccinations in England during the coronavirus (COVID-19) pandemic: cross-sectional survey and qualitative interview data. (2020) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline

Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. (2020) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline

opensafely/covid-vs-noncovid-deaths-research. (2021) Bhaskaran, Krishnan, Inglesby, Peter

christian-bottomley/mixture_model_sarscov2. (2021) Bottomley, Christian

KITmetricslab/covid19-forecast-hub-de. (2021) Bracher, J., Wolffram, D., Deuschel, J., Görgen, K., Ketterer, J.L., Ullrich, A., Abbott, Sam, Barbarossa, M.V., Bertsimas, D., Bhatia, S., Bodych, M., Bosse, Nikos I., Burgard, J.P., Castro, L., Fairchild, G., Fuhrmann, J., Funk, Sebastian, Gogolewski, K., Gu, Q., Heyder, S., Hotz, T., Kheifetz, Y., Kirsten, H., Krueger, T., Krymova, E., Li, M.L., Meinke, J.H., Michaud, I.J., Niedzielewski, K., Ożański, T., Rakowski, F., Scholz, M., Soni, S., Srivastava, A., Zieliński, J., Zou, D., Gneiting, T., Schienle, M.

ojal/KenyaSerology. (2021) Brand, Samuel, Ojal, John

Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Lesotho data. (2023) Bresser, M, Erhardt, R.M., Shanaube, K., Simwinga, M, Mahlatsi, P.A., Belus, J., Schaap, Ab, Amstutz, A., Gachie, Thomas, Glass, T.R., Kangolo, B., Mota, M.J., Floyd, Sian, Katende, B., Klinkenberg, E., Ayles, Helen, Reither, K., Ruperez, M.

Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Zambia data. (2023) Bresser, M, Erhardt,, R.M., Shanaube, K, Simwinga, M, Mahlatsi, P.A., Belus, J, Schaap, Ab, Amstutz, A, Gachie, Thomas, Glass, T.R., Kangolo, B, Mota, M.J., Floyd, Sian, Katende, B, Klinkenberg, E, Ayles, Helen, Reither, K, Ruperez, M

rachaelmburke/tbcovidblantyre. (2021) Burke, Rachael

Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020) Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Thézé, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thaís M., da Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete, Carlos A., Ashworth, Jordan, Nakaya, Helder I., Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Átila D., Braga, Carlos K.V., Gerber, Alexandra L., de C. Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S., Lima, Cristiano X., Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud, Mauricio W., Castiñeiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., de Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., de Sá, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G, Nogueira, Maurício L., Ferguson, Neil M, Costa, Silvia F., Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno Rodrigues

Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020) Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Thézé, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thaís M., da Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete, Carlos A., Ashworth, Jordan, Nakaya, Helder I., Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Átila D., Braga, Carlos K.V., Gerber, Alexandra L., de C. Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S., Lima, Cristiano X., Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud, Mauricio W., Castiñeiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., de Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., de Sá, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G, Nogueira, Maurício L., Ferguson, Neil M, Costa, Silvia F., Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno Rodrigues

Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil. (2022) Cerqueira-Silva, Thiago, de Araujo Oliveira, Vinicius, Paixão, Enny S., Júnior, Juracy Bertoldo, Penna, Gerson O., Werneck, Guilherme L., Pearce, Neil, Barreto, Maurício L., Boaventura, Viviane S., Barral-Netto, Manoel

LloydChapman/COVID_homeless_modelling. (2021) Chapman, Lloyd A. C.

francescochecchi/aden_covid. (2020) Checchi, Francesco

francescochecchi/mortality_capture_recapture_analysis. (2022) Checchi, Francesco

Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. (2023) Clifford, Samuel, Hackman, Jada

cmmid/pcr_test_trace. (2020) Clifford, Samuel, Quilty, Billy

Social contact data from CoMix survey (Belgium). (2020) Coletti, Pietro, Wambua, James, Gimma, Amy, Willem, Lander, Vercruysse, Sarah, Vanhoutte, Bieke, Jarvis, Christopher I, Van Zandvoort, Kevin, Edmunds, John, Beutels, Philippe, Hens, Niel

CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G.

cmmid/covid-age. (2020) Davies, Nicholas G.

nicholasdavies/covidm-alpha. (2020) Davies, Nicholas G.

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John

Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G., Jarvis, Christopher I., CMMID COVID-19 Working Group, Edmunds, W. John, Jewell, Nicholas P., Diaz-Ordaz, Karla, Keogh, Ruth H.

cmmid/covid-uk. (2020) Davies, Nicholas G, Kucharski, Adam J., Eggo, Rosalind M, Gimma, Amy, COVID-19 Working Group, Edmunds, W. John

Global intent to accept COVID-19 vaccines. (2021) De Figueiredo, Alex

Impact of vaccine passports on inclination to accept COVID-19 vaccinations in the UK. (2021) De figueiredo, Alex

Additional file 1 of Characterising social contacts under COVID-19 control measures in Africa. (2022) Dobreva, Zlatina, Gimma, Amy, Rohan, Hana, Djoudalbaye, Benjamin, Tshangela, Akhona, Jarvis, Christopher I., Van Zandvoort, Kevin, Quaife, Matthew

Wastewater surveillance overcomes socio-economic limitations of laboratory-based surveillance when monitoring disease transmission: the South African experience during the COVID-19 pandemic. (2025) Els, Fiona, Maree, Gillian, Naidoo, Yashena, Naidoo, Laven, Mahamuza, Phemelo, Macheke, Mokgaetji, Ndlovu, Nkosenhle, Iwu-Jaja, Chinwe, Taukobong, Setshaba, Maposa, Sibonginkosi, O'reilly, Kathleen M., Yousif, Mukhlid, McCarthy, Kerrigan, Rachida, Said

Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020) Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian

akira-endo/COVID19_backwardtracing. (2020) Endo, Akira, Kucharski, Adam J.

Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. (2020) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy description

Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. (2021) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy

epiforecasts/ons_severity_estimates. (2022) Funk, Sebastian

Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. (2021) Gaskell, Katherine M., Johnson, Marina, Gould, Victoria, Hunt, Adam, Stone, Neil RH, Waites, William, Kasstan, Ben, Chantler, Tracey, Lal, Sham, Roberts, Chrissy h., Goldblatt, David, Eggo, Rosalind M., Marks, Michael

cmmid/uk_movement_communities_covid. (2021) Gibbs, Hamish

Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. (2021) Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.

Data supporting "A Snapshot of the Practicality of, and Barriers to, Implementation of COVID-19 Interventions: Public Health and Healthcare Workers' Perceptions". (2021) Glazik, Rosanna description

grahams99/Enhanced_surveillance_questionnaire. (2023) Graham, Sophie

Community engagement in the prevention and control of COVID-19: Insights from Vietnam. Qualitative transcripts. (2021) Ha, Bui Thi Thu, Ngoc Quang, La, Quoc Thanh, Pham, Duc, Duong Minh, Mirzoev, Tolib, Bui, Thi My Anh

timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020) Hellewell, Joel, Lucas, Tim, Davis, Emma, Abbott, Sam, Gimma, Amy, Thompson, Robin

cmmid/pcr-profile. (2020) Hellewell, Joel, Russell, Timothy W., The SAFER Investigators and Field Study Team, The Crick COVID-19 Consortium, CMMID COVID-19 working group, Beale, Rupert, Kelly, Gavin, Houlihan, Catherine, Nastouli, Eleni, Kucharski, Adam J.

dchodge/hero-study: Version submitted with WOR reviewers comments. (2022) Hodgson, David, Abbott, Sam

Circulation of respiratory viruses during the COVID-19 pandemic in the Gambia. (2022) Jarju, Sheikh, Senghore, Elina, Brotherton, Helen, Saidykhan, Alasana, Jallow, Samba, Krubally, Ebrima, Sinjanka, Edrisa, Ndene, Morris Ngor, Bajo, Fabakary, Sanyang, Musa M, Saidy, Binta, Bah, Alasana, Mohammed, Nuredin I, Forrest, Karen, Clarke, Ed, Dalessandro, Umberto, Sesay, Abdul Karim, Usuf, Effua, Cerami, Carla, Roca, Anna, Kampmann, Beate, De silva, Thushan

jarvisc1/comix_uk_covid_restrictions. (2021) Jarvis, Christopher

Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher

Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. (2021) Kitonsa, Jonathan, Kamacooko, Onesmus, Bahemuka, Ubaldo M., Kibengo, Freddie, Kakande, Ayoub, Wajja, Anne, Basajja, Vincent, Lumala, Alfred, Ssemwanga, Edward, Asaba, Robert, Mugisha, Joseph, Pierce, Benjamin F., Shattock, Robin, Kaleebu, Pontiano, Ruzagira, Eugene description

gwenknight/hai_first_wave. (2021) Knight, Gwen

SARS-CoV-2 Seroprevalence in Kenya dataset. (2024) Koech, Angela, Omuse, Geoffrey, Mugo, Alex, Mwaniki, Isaac, Mutunga, Joseph, Mukhanya, Moses, Wanje, Onesmus, Mwashigadi, Grace, Katana, Geoffrey, Craik, Rachel, Von Dadelszen, Peter, Le Doare, Kirsty, Temmermen, Marleen, The PRECISE Network description

Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". (2021) Koltai, Mihaly

mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021) Koltai, Mihaly

adamkucharski/covid-import-model. (2021) Kucharski, Adam J.

Replication Data for: Comparative performance of the InBios SCoV-2 DetectTM IgG ELISA and the in-house KWTRP ELISA in detecting SARS-CoV-2 spike IgG antibodies in Kenyan populations. (2023) Kutima, Bernadette, Kagucia, Wangeci, Mwai, Kennedy, Kimani, Makobu, Sigilai, Antipa, Mugo, Daisy, Karani, Kenneth, Akech, Donald, Toroitich, Monica, Karia, Boniface, Tuju, James, Ziraba, Abdhalah K., Bigogo, Godfrey, Ochieng, Caroline, Onyango, Clayton, Lidechi, Shirley, Munywoki, Patrick K., Uyoga, Sophie, Adetifa, Ifedayo M. O., Ochola-Oyier, Lynette I., Bejon, Philip, Scott, J. Anthony G., Agweyu, Ambrose, Warimwe, George M., Nyagwange, James

Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. (2021) Laban, Natasha

COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020) Lazarus, Jeffrey V., Ratzan, Scott, Palayew, Adam, Billari, Francesco C., Binagwaho, Agnes, Kimball, Spencer, Larson, Heidi J., Melegaro, Alessia, Rabin, Kenneth, White, Trenton M., El-Mohandes, Ayman

qleclerc/COVID_bed_occupancy. (2021) Leclerc, Quentin J.

COVID19 settings of transmission - collected reports database. (2020) Leclerc, Quentin J., Fuller, Naomi M., Knight, Lisa E., Funk, Sebastian, Knight, Gwenan M.

Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021) Lindsey, Benjamin B., Villabona-Arenas, Christian Julian, Atkins, Katherine E., Campbell, Finlay

yangclaraliu/COVID19_NPIs_vs_Rt. (2020) Liu, Yang

yangclaraliu/COVID_Vac_Delay. (2022) Liu, Yang

yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra

yangclaraliu/covid_vac_africa: BMCMed_R3. (2023) Liu, Yang, Procter, Simon R, Pearson, Carl A. B., Madriz Montero, Andres, Torres-Rueda, Sergio, Asfaw, Elias, Uzochukwu, Benjamin, Drake, Tom, Bergren, Eleanor, Eggo, Rosalind M., Ruiz, Francis, Ndembi, Nicaise, Nonvignon, Justice, Jit, Mark, Vassall, Anna

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021) Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark

Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021) Lovell-Read, Francesca A., Funk, Sebastian, Obolski, Uri, Donnelly, Christl A., Thompson, Robin N.

opensafely/post-covid-kidney-outcomes. (2025) Mahalingasivam, Viyaasan, Zheng, Bang, lshbz1, Dillingham, Iain

Paul-Mee/clic_brazil. (2021) Mee, Paul, Alexander, Neal, Colón-González, Felipe J

jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021) Munday, James D.

jdmunday/CoMix_schools_reopening. (2021) Munday, James D., Jarvis, Christopher I.

CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021) Munday, James D, Jarvis, Christopher I., Gimma, Amy, Wong, Kerry L, van Zandvoort, Kevin, Funk, Sebastian, Edmunds, W. John

COVID-19 length of hospital stay. (2020) Nightingale, Emily, Waterlow, Naomi, Clifford, Samuel, Rees, Eleanor

enilles1/immunoepidemiology. (2024) Nilles, Eric J., Kucharski, Adam J.

kath-o-reilly/wbe_prevalence_england_python. (2022) O'Reilly, Kathleen M.

Online survey questions: Social, ethical and behavioural aspects of COVID-19. (2020) Osterrieder, Anne, Poomchaichote, Tassawan, Cuman, Giulia, Pan-ngum, Wirichada, Cheah, Phee-Kheng, Waithira, Naomi, Mukaka, Mavuto, Naemiratch, Bhensri, Kulpijit, Natinee, Chanviriyavuth, Rita, Asarath, Supa-at, Ruangkajorn, Supanat, Silan, Margherita, Stoppa, Silvia, Zuanna, Gianpiero Della, Cheah, Phaik Kin, Ongkili, Darlene, Schneiders, Mira, Mackworth-Young, Constance R.S., Cheah, Phaik Yeong

covidregionaldata: Subnational data for COVID-19 epidemiology. (2021) Palmer, Joseph, Sherratt, Katharine, Martin-Nielsen, Richard, Bevan, Jonnie, Gibbs, Hamish, CMMID COVID-19 Working Group, Funk, Sebastian, Abbott, Sam

vac-lshtm/VaC_tracker. (2021) Parker, Edward

opensafely/ckd-coverage-ve. (2022) Parker, Edward, Horne, Elsie

Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021) Pavelka, Martin, van Zandvoort, Kevin, Abbott, Sam, Sherratt, Katharine, Majdan, Marek, Jarcuska, Pavel, Krajci, Marek, Flasche, Stefan, Funk, Sebastian

PROTECT initiative extended Covid-19 occupational questionnaire. (2021) Pearce, Neil

Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021) Pearson, Carl A B, Bozzani, Fiammetta, Procter, Simon R, Davies, Nicholas G, Huda, Maryam, Jensen, Henning Tarp, Keogh-Brown, Marcus, Khalid, Muhammad, Sweeney, Sedona, Torres-Rueda, Sergio, Eggo, Rosalind M, Vassall, Anna, Jit, Mark

cmmid/covidTestVac. (2021) Pearson, Carl A. B.

cmmid/SA2UK. (2021) Pearson, Carl A. B., Russell, Timothy W., Kucharski, Adam J.

tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023) Pillai, Alexander N., Hladish, Thomas, Pearson, Carl A. B., Toh, Ben, Noah4944, Stoltzfus, Arlin

kieshaprem/synthetic-contact-matrices. (2021) Prem, Kiesha

Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel

rachaelpung/covid_missed_infections. (2023) Pung, Rachael

rachaelpung/cruise_networks. (2022) Pung, Rachael

rachaelpung/serial_interval_covid_b.1.617.2. (2021) Pung, Rachael

mquaife/kenya_mixing. (2020) Quaife, Matthew

cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy

cmmid/quar_test_contact_tracing. (2021) Quilty, Billy

R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". (2021) Quilty, Billy J, Hellewell, Joel, Clifford, Samuel, CMMID COVID-19 working group description

Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020) Rees, Eleanor M., Nightingale, Emily S., Jafari, Yalda, Waterlow, Naomi R., Clifford, Samuel, B. Pearson, Carl A., CMMID Working Group, Jombart, Thibaut, Procter, Simon R., Knight, Gwenan M.

Data for: "Vaccine Confidence and Hesitancy at the start of COVID-19 vaccine deployment in the UK: An embedded mixed-methods study". (2021) Roberts, Chrissy, Brindle, Hannah, Rogers, Nina, Eggo, Rosalind M., Enria, Luisa, Lees, Shelley description

rmjlros/COVID19_care_home_NPIs. (2021) Rosello, Alicia, Abbott, Sam, Barnard, Rosanna C.

Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". (2023) Russell, Timothy W.

Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020) Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group

thimotei/legacy_nAb_kinetics. (2024) Russell, Timothy W., Kucharski, Adam J.

Processed INSDC dataset for MOV analysis. (2023) Sanderson, Theo

theosanderson/molnupiravir. (2023) Sanderson, Theo, Ruis, Chris

gasparrini/ItalyCOVIDdeath. (2020) Scortichini, Matteo, Schneider dos santos, Rochelle, De' Donato, De Sario, Manuela, Michelozzi, Paola, Davoli, Marina, Masselot, Pierre, Sera, Francesco, Gasparrini, Antonio

fsera/COVIDWeather. (2021) Sera, Francesco, Abbott, Sam, Roye, Dominic

epiforecasts/rt-comparison-uk-public: v1.0.0. (2020) Sherratt, Katharine

covid19-forecast-hub-europe/euro-hub-ensemble: Zenodo release. (2022) Sherratt, Katharine, Funk, Sebastian

DidDrog11/smoking_covid_bayes. (2021) Simons, David

The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 11) - Data. (2021) Simons, David, Shahab, Lion, Brown, Jamie, Perski, Olga

The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 9) - Data. (2020) Simons, David, Shahab, Lion, Brown, Jamie, Perski, Olga

STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021) Strongman, Helen, Carreira, Helena folder_zip

Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. (2021) Uyoga, Sophie, Adetifa, Ifedayo M.O., Otiende, Mark, Gitonga, John N., Mugo, Daisy, Nyagwange, James, Karanja, Henry Kibe, Tuju, James, Makale, Johnstone, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Chege, Evelynn, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette I., Warimwe, George M., Agweyu, Ambrose, Scott, J. Anthony G.

reichlab/covidHubUtils. (2021) Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian

cmmid/coronavirus_immunity. (2021) Waterlow, Naomi R., Van Leeuwen, Edwin, Davies, Nicholas, Flasche, Stefan, Eggo, Rosalind M.

Social Contact Rates (SOCRATES) Data Tool. (2020) Willem, Lander, Hoang, Van Thang, Funk, Sebastian, Coletti, Pietro, Beutels, Philippe, Hens, Niel

Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission. (2022) Woodhouse, Mark, Aspinall, Willy, Sparks, RSJ, Brooks-Pollock, Ellen, Relton, Caroline L.

Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread. (2021) Wu, Joseph T., Mei, Shujiang, Luo, Sihui, Leung, Kathy, Liu, Di, Lv, Qiuying, Liu, Jian, Li, Yuan, Prem, Kiesha, Jit, Mark, Weng, Jianping, Feng, Tiejian, Zheng, Xueying, Leung, Gabriel M.

lwyakob/COVIDquarantine. (2021) Yakob, Laith

lwyakob/COVIDsaturates. (2020) Yakob, Laith, Nightingale, Emily

Anaphylaxis events following COVID-19 antiviral and neutralising monoclonal antibody treatment for non-hospitalised patients. (2023) Zheng, Bang

Data supporting "Temporal trends of SARS-CoV-2 exposure in adolescents: a longitudinal pilot study nested in a Uganda birth cohort". (2025) Zirimenya, Ludoviko, Natukunda, Agnes, Nassuna, Jacent, Nkurunungi, Gyaviira, Elliott, Alison M., Webb, Emily description

covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022) actions-user, Sherratt, Katharine, Gruson, Hugo, Funk, Sebastian, Bracher, Johannes, BIOCOM-SC, Walraven, Robert, miraanto, h-veronika, Rodiah, Isti, gr3gr3, Kraus, David, hgurung-iem, epiforecasts-bot, Xu, Frost Tianjian, Heyder, Stefan, aniruddhadiga, Abbott, Sam, Sun, Tao, Mingio, Marco, Deuschel, Jannik, pmontman, janezz25, neele-itwm, Gibson, Graham, EpiGraph, Tarantino, Barbara, Karlen, Dean, Bhatia, Sangeeta, borjarv