Keywords
Number of items: 170.
Dataset
vaccine-impact/epi_covid. (2020)
Abbas, Kaja M.
Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Continent Summary Reproduction Number (R) Based on Reported Cases. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Continent Summary Reproduction Number (R) Based on Reported Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National Reproduction Number (R) Based on Reported Cases. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National Reproduction Number (R) Estimates Based on Reported Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. (2020)
Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian
epiforecasts/EpiSoon. (2020)
Abbott, Sam; Bosse, Nikos; DeWitt, Michael; Rau, Andrea; Chateigner, Aurelien; Mareschal, Sylvain; Hellewell, Joel
epiforecasts/covid19.sgene.utla.rt. (2021)
Abbott, Sam; Funk, Sebastian
epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020)
Abbott, Sam; Funk, Sebastian; Munday, James D.; Hellewell, Joel
seabbs/CovidInterventionReview: CC0 license. (2020)
Abbott, Sam; Gaythorpe, Katy A.M.; Imai, Natsuko; Liu, Yang
epiforecasts/EpiNow2. (2021)
Abbott, Sam; Hickson, Joe; Badr, Hamada S.; Funk, Sebastian; Monticone, Pietro; Ellis, Peter; Munday, James D.; Allen, Jamie; Pearson, Carl A. B.; DeWitt, Michael; Bosse, Nikos; Meakin, Sophie
epiforecasts/covid19.nhs.data: Initial release. (2021)
Abbott, Sam; Meakin, Sophie
seabbs/ecdc-weekly-growth-forecasts. (2022)
Abbott, Sam; Sherratt, Katharine
Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021)
Abbott, Sam; Sherratt, Katharine; Funk, Sebastian
epiforecasts/covid: Submission release. (2020)
Abbott, Sam; Sherratt, Katharine; Funk, Sebastian; Hellewell, Joel
epiforecasts/NCoVUtils. (2020)
Abbott, Sam; Sherratt, Katharine; Gibbs, Hamish; Finger, Flavio; Campbell, Paul; Hellewell, Joel; Barks, Patrick; Meakin, Sophie; Lee, Haze
Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021)
Aburto, José Manuel; Schöley, Jonas; Kashnitsky, Ilya; Knowles, Ian; Zhang, Luyin; Rahal, Charles; Missov, Trifon I; Dowd, Jennifer B; Mills, Melinda C; Kashyap, Ridhi
Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. (2021)
Adetifa, Ifedayo M. O.; Uyoga, Sophie; Gitonga, John N.; Mugo, Daisy; Otiende, Mark; Nyagwange, James; Karanja, Henry K.; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng’ang’a, Wangari; Rombo, Charles; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W.; Gallagher, Katherine E.; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Bejon, Philip; Ochola-Oyier, Lynette I.; Agweyu, Ambrose; Scott, J. Anthony G.; Warimwe, George M.
Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020)
Aldridge, Robert W.; Lewer, Dan; Beale, Sarah; Johnson, Anne M.; Zambon, Maria; Hayward, Andrew C.; Fragaszy, Ellen
Additional file 1 of Assessing gender responsiveness of COVID-19 response plans for populations in conflict-affected humanitarian emergencies. (2022)
Asi, Yara M.; Bebasari, Priliantina; Hardy, Emily; Lokot, Michelle; Meagher, Kristen; Ogbe, Emilomo; Parray, Ateeb Ahmad; Sharma, Vandana; Standley, Claire J.; Vahedi, Luissa
Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. (2021)
Assefa, Nega; Demissie, Lemma; Teklemarriam, Zelalem; Oundo, Joseph O.; Madrid, Lola; Dessie, Yadeta; Scott, J. Anthony G.
rosannaclairebarnard/covidm-mtd-Omi. (2022)
Barnard, Rosanna C.
Parents’ and guardians’ views and experiences of accessing routine childhood vaccinations in England during the coronavirus (COVID-19) pandemic: cross-sectional survey and qualitative interview data. (2020)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline
Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. (2020)
Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Paterson, Pauline
Open Science during the pandemic. (2020)
Besançon, Lonni; Deforet, Maxime; Leyrat, Clemence; Segalas, Corentin; Jiang, Haiting; Masuzzo, Paola
opensafely/covid-vs-noncovid-deaths-research. (2021)
Bhaskaran, Krishnan; Inglesby, Peter
christian-bottomley/mixture_model_sarscov2. (2021)
Bottomley, Christian
KITmetricslab/covid19-forecast-hub-de. (2021)
Bracher, J.; Wolffram, D.; Deuschel, J.; Görgen, K.; Ketterer, J.L.; Ullrich, A.; Abbott, Sam; Barbarossa, M.V.; Bertsimas, D.; Bhatia, S.; Bodych, M.; Bosse, Nikos I.; Burgard, J.P.; Castro, L.; Fairchild, G.; Fuhrmann, J.; Funk, Sebastian; Gogolewski, K.; Gu, Q.; Heyder, S.; Hotz, T.; Kheifetz, Y.; Kirsten, H.; Krueger, T.; Krymova, E.; Li, M.L.; Meinke, J.H.; Michaud, I.J.; Niedzielewski, K.; Ożański, T.; Rakowski, F.; Scholz, M.; Soni, S.; Srivastava, A.; Zieliński, J.; Zou, D.; Gneiting, T.; Schienle, M.
ojal/KenyaSerology. (2021)
Brand, Samuel; Ojal, John
rachaelmburke/tbcovidblantyre. (2021)
Burke, Rachael
Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020)
Candido, Darlan S.; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H. M.; Sales, Flavia C. S.; Manuli, Erika R.; Thézé, Julien; Almeida, Luiz; Menezes, Mariane T.; Voloch, Carolina M.; Fumagalli, Marcilio J.; Coletti, Thaís M.; da Silva, Camila A. M.; Ramundo, Mariana S.; Amorim, Mariene R.; Hoeltgebaum, Henrique H.; Mishra, Swapnil; Gill, Mandev S.; Carvalho, Luiz M.; Buss, Lewis F.; Prete, Carlos A.; Ashworth, Jordan; Nakaya, Helder I.; Peixoto, Pedro S.; Brady, Oliver J.; Nicholls, Samuel M.; Tanuri, Amilcar; Rossi, Átila D.; Braga, Carlos K.V.; Gerber, Alexandra L.; de C. Guimarães, Ana Paula; Gaburo, Nelson; Alencar, Cecila Salete; Ferreira, Alessandro C.S.; Lima, Cristiano X.; Levi, José Eduardo; Granato, Celso; Ferreira, Giulia M.; Francisco, Ronaldo S.; Granja, Fabiana; Garcia, Marcia T.; Moretti, Maria Luiza; Perroud, Mauricio W.; Castiñeiras, Terezinha M. P. P.; Lazari, Carolina S.; Hill, Sarah C.; de Souza Santos, Andreza Aruska; Simeoni, Camila L.; Forato, Julia; Sposito, Andrei C.; Schreiber, Angelica Z.; Santos, Magnun N. N.; de Sá, Camila Zolini; Souza, Renan P.; Resende-Moreira, Luciana C.; Teixeira, Mauro M.; Hubner, Josy; Leme, Patricia A. F.; Moreira, Rennan G; Nogueira, Maurício L.; Ferguson, Neil M; Costa, Silvia F.; Proenca-Modena, José Luiz; Vasconcelos, Ana Tereza R.; Bhatt, Samir; Lemey, Philippe; Wu, Chieh-Hsi; Rambaut, Andrew; Loman, Nick J.; Aguiar, Renato S.; Pybus, Oliver G.; Sabino, Ester C.; Faria, Nuno Rodrigues
Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. (2021)
Chapman, Lloyd A C; Barnard, Rosanna C; Russell, Timothy W; Abbott, Sam; Van Zandvoort, Kevin; Davies, Nicholas G; Kucharski, Adam J
francescochecchi/aden_covid. (2020)
Checchi, Francesco
cmmid/pcr_test_trace. (2020)
Clifford, Samuel; Quilty, Billy
cmmid/travel_screening_strategies. (2020)
Clifford, Samuel; Quilty, Billy J.; Russell, Timothy W.; Liu, Yang; Chan, Yung-Wai Desmond; Pearson, Carl A. B.; Eggo, Rosalind M.; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; Edmunds, W. John
Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020)
Clifford, Samuel; Quilty, Billy; CMMID nCoV working group; Pearson, Carl; Flasche, Stefan; Eggo, Rosalind M.
Social contact data from CoMix survey (Belgium). (2020)
Coletti, Pietro; Wambua, James; Gimma, Amy; Willem, Lander; Vercruysse, Sarah; Vanhoutte, Bieke; Jarvis, Christopher I; Van Zandvoort, Kevin; Edmunds, John; Beutels, Philippe; Hens, Niel
Clinical codelist - CPRD Aurum - COVID-19. (2022)
Davidson, Jennifer
description
Clinical codelist - HES - COVID-19. (2022)
Davidson, Jennifer
description
CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.
cmmid/covid-age. (2020)
Davies, Nicholas G.
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021)
Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021)
Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John
Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.; Jarvis, Christopher I.; CMMID COVID-19 Working Group; Edmunds, W. John; Jewell, Nicholas P.; Diaz-Ordaz, Karla; Keogh, Ruth H.
cmmid/covid-uk. (2020)
Davies, Nicholas G; Kucharski, Adam J.; Eggo, Rosalind M; Gimma, Amy; COVID-19 Working Group; Edmunds, W. John
Global intent to accept COVID-19 vaccines. (2021)
De Figueiredo, Alex
Impact of vaccine passports on inclination to accept COVID-19 vaccinations in the UK. (2021)
De figueiredo, Alex
akira-endo/reanalysis_Fukumoto2021: 'Not finding causal effect' is not 'finding no causal effect' of school closure on COVID-19. (2022)
Endo, Akira
Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
akira-endo/COVID19_backwardtracing. (2020)
Endo, Akira; Kucharski, Adam J.
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. (2020)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
description
Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. (2021)
Enria, Luisa; Waterlow, Naomi; Rogers, Nina; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M.; Lees, Shelley; Roberts, Chrissy
Dataset of Study: Estimated number of deaths directly avoided because of COVID-19 vaccination among older adults in Colombia. (2022)
Fernández-Niño, Julián Alfredo; Rojas Botero, Maylen Liseth; Arregoces, Leonardo; Ruiz, Fernando
epiforecasts/ons_severity_estimates. (2022)
Funk, Sebastian
Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. (2021)
Gaskell, Katherine M.; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy h.; Goldblatt, David; Eggo, Rosalind M.; Marks, Michael
cmmid/uk_movement_communities_covid. (2021)
Gibbs, Hamish
UK Colocation Dashboard. (2020)
Gibbs, Hamish; CMMID nCov Working Group; Eggo, Rosalind M.; Grundy, Chris; Kucharski, Adam J.
Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. (2021)
Gibbs, Hamish; Waterlow, Naomi R.; Cheshire, James; Danon, Leon; Liu, Yang; Grundy, Chris; Kucharski, Adam J.; Eggo, Rosalind M.
hamishgibbs/facebook_population_2020_2021. (2022)
Gibbs, Hamish; Waterlow, Naomi R.; Cheshire, James; Danon, Leon; Liu, Yang; Grundy, Chris; Kucharski, Adam J.; Eggo, Rosalind M.
Mean contacts by age and date. (2022)
Gimma, Amy; Munday, James D.; Wong, Kerry L. M.; Coletti, Pietro; Van Zandvoort, Kevin; Prem, Kiesha; Klepac, Petra; Rubin, G. James; Funk, Sebastian; Edmunds, W. John; Jarvis, Christopher I.
CoMix social contact data (Austria). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (France). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Italy). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Poland). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Portugal). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Spain). (2021)
Gimma, Amy; Wong, Kerry LM; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Denmark). (2021)
Gimma, Amy; Wong, Kerry Lm; Coletti, Pietro; Jarvis, Christopher I.
CoMix social contact data (Estonia). (2022)
Gimma, Amy; Wong, Kerry Lm; Coletti, Pietro; Jarvis, Christopher I.
Data supporting "A Snapshot of the Practicality of, and Barriers to, Implementation of COVID-19 Interventions: Public Health and Healthcare Workers' Perceptions". (2021)
Glazik, Rosanna
description
Community engagement in the prevention and control of COVID-19: Insights from Vietnam. Qualitative transcripts. (2021)
Ha, Bui Thi Thu; Ngoc Quang, La; Quoc Thanh, Pham; Duc, Duong Minh; Mirzoev, Tolib; Bui, Thi My Anh
cmmid/ringbp. (2020)
Hellewell, Joel
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020)
Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos; Jarvis, Christopher; Russell, Timothy; Munday, James; Kucharski, Adam; Edmunds, W John; Funk, Sebastian; Eggo, Rosalind; Sun, Fiona; Flasche, Stefan; Quilty, Billy; Davies, Nicholas; Liu, Yang; Clifford, Samuel; Klepac, Petra; Jit, Mark; Diamond, Charlie; Gibbs, Hamish; Van Zandvoort, Kevin
timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020)
Hellewell, Joel; Lucas, Tim; Davis, Emma; Abbott, Sam; Gimma, Amy; Thompson, Robin
dchodge/hero-study: Version submitted with WOR reviewers comments. (2022)
Hodgson, David; Abbott, Sam
jarvisc1/comix_covid-19-first_wave. (2020)
Jarvis, Christopher
jarvisc1/comix_uk_covid_restrictions. (2021)
Jarvis, Christopher
Inferring COVID-19 cases from recent death. (2020)
Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Van zandvoort, Kevin; Jarvis, Christopher
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Zandvoort, Kevin; Clifford, Samuel; Jarvis, Christopher; Russell, Timothy; Funk, Sebastian; Gibbs, Hamish; Eggo, Rosalind M.; Kucharski, Adam J.; CMMID COVID-19 Working Group; Edmunds, W. John
thibautjombart/covid19_bed_occupancy: Second major release. (2020)
Jombart, Thibaut; Clifford, Samuel; Pearson, Carl A. B. Pearson; Rees, Eleanor; Nightingale, Emily; Procter, Simon; Knight, Gwen
SungmokJung/Projection_Japan_COVID19 v1.0.0. (2021)
Jung, Sung-mok; Endo, Akira; Kinoshita, Ryo; Nishiura, Hiroshi
Lived experiences of frontline healthcare providers offering maternal and newborn services amidst the novel corona virus disease 19 pandemic in Uganda: A qualitative study. S1 Dataset. (2021)
Kayiga, Herbert; Genevive, Diane Achanda; Amuge, Pauline Mary; Ssemata, Andrew Sentoogo; Nanzira, Racheal Samantha; Nakimuli, Annettee
Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. (2021)
Kitonsa, Jonathan; Kamacooko, Onesmus; Bahemuka, Ubaldo M.; Kibengo, Freddie; Kakande, Ayoub; Wajja, Anne; Basajja, Vincent; Lumala, Alfred; Ssemwanga, Edward; Asaba, Robert; Mugisha, Joseph; Pierce, Benjamin F.; Shattock, Robin; Kaleebu, Pontiano; Ruzagira, Eugene
description
mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021)
Koltai, Mihaly
adamkucharski/covid-import-model. (2021)
Kucharski, Adam J.
Probability of a large 2019-nCoV outbreak following introduction of cases. (2020)
Kucharski, Adam J.; Russell, Timothy W.; Diamond, Charlie; CMMID nCoV working group; Funk, Sebastian; Eggo, Rosalind M.
Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. (2021)
Laban, Natasha
COVID19 settings of transmission - collected reports database. (2020)
Leclerc, Quentin J.; Fuller, Naomi M.; Knight, Lisa E.; Funk, Sebastian; Knight, Gwenan M.
qleclerc/nhs_pathways_report. (2020)
Leclerc, Quentin J.; Nightingale, Emily; Abbott, Sam
tsleng93/SocialBubble: Social Bubble (including density dependence). (2020)
Leng, Trystan; Flasche, Stefan
Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021)
Lindsey, Benjamin B.; Villabona-Arenas, Christian Julian; Atkins, Katherine E.; Campbell, Finlay
yangclaraliu/COVID19_NPIs_vs_Rt. (2020)
Liu, Yang
yangclaraliu/COVID_Vac_Delay. (2022)
Liu, Yang
yangclaraliu/2019nCoV_proportion_asym: WOR Submission. (2020)
Liu, Yang; Funk, Sebastian; Flasche, Stefan
yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020)
Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; CMMID COVID-19 Working Group; Jit, Mark; Flasche, Stefan; Klepac, Petra
Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021)
Liu, Yang; Sandmann, Frank G.; Barnard, Rosanna C.; Pearson, Carl A.B.; CMMID Working-19 Working Group; Pastore, Roberta; Pebody, Richard; Flasche, Stefan; Jit, Mark
Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021)
Lovell-Read, Francesca A.; Funk, Sebastian; Obolski, Uri; Donnelly, Christl A.; Thompson, Robin N.
Interview summary data supporting "Public involvement in pandemic modelling: a qualitative study of Test, Trace and Isolate practices in the UK and implications for modelling". (2022)
Marshall, Guy; Skeva, Rigina; Jay, Caroline; Fearon, Elizabeth
Social contact information from PIPSA residents in uMkhanyakude before and during the Covid-19 pandemic – data from the Umoya Omuhle and Covid Social Contacts studies. (2021)
Mccreesh, Nicky; Dlamini, Vuyiswa; Edwards, Anita; Olivier, Stephen; Dayi, Njabulo; Dikgale, Keabetswe; Nxumalo, Siyabonga; Dreyer, Jaco; Baisley, Kathy; Siedner, Mark J.; White, Richard G.; Herbst, Kobus; Grant, Alison D.; Harling, Guy
Paul-Mee/clic_brazil. (2021)
Mee, Paul; Alexander, Neal; Colón-González, Felipe J
jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021)
Munday, James D.
jdmunday/CoMix_schools_reopening. (2021)
Munday, James D.; Jarvis, Christopher I.
CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021)
Munday, James D; Jarvis, Christopher I.; Gimma, Amy; Wong, Kerry L; van Zandvoort, Kevin; Funk, Sebastian; Edmunds, W. John
esnightingale/covid_deaths_spatial. (2022)
Nightingale, Emily
COVID-19 length of hospital stay. (2020)
Nightingale, Emily; Waterlow, Naomi; Clifford, Samuel; Rees, Eleanor
Replication Data for: Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. (2020)
Otieno, Grieven P.; Murunga, Nickson; Agoti, Charles N.; Gallagher, Katherine E.; Awori, Juliet O.; Nokes, D. James
covidregionaldata: Subnational data for COVID-19 epidemiology. (2021)
Palmer, Joseph; Sherratt, Katharine; Martin-Nielsen, Richard; Bevan, Jonnie; Gibbs, Hamish; CMMID COVID-19 Working Group; Funk, Sebastian; Abbott, Sam
Covid 2019 tracker. (2020)
Parker, Edward
vac-lshtm/VaC_tracker. (2021)
Parker, Edward
opensafely/ckd-coverage-ve. (2022)
Parker, Edward; Horne, Elsie
Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021)
Pavelka, Martin; van Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Jarcuska, Pavel; Krajci, Marek; Flasche, Stefan; Funk, Sebastian
PROTECT initiative extended Covid-19 occupational questionnaire. (2021)
Pearce, Neil
Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021)
Pearson, Carl A B; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; Eggo, Rosalind M; Vassall, Anna; Jit, Mark
cmmid/covidTestVac. (2021)
Pearson, Carl A. B.
cmmid/SA2UK. (2021)
Pearson, Carl A. B.; Russell, Timothy W.; Kucharski, Adam J.
cmmid/SA2UK: CEA submission. (2022)
Pearson, Carl A. B.; Russell, Timothy W.; Kucharski, Adam J.
Projections of COVID-19 epidemics in LMIC countries. (2020)
Pearson, Carl A. B.; Van zandvoort, Kevin; Jarvis, Christopher I.; Davies, Nicholas G.; Thompson, Sam; Checchi, Francesco; Jit, Mark; Eggo, Rosalind M.; LSHTM CMMID COVID-19 Working Group
COVID-Profiler. (2020)
Phelan, Jody; Deelder, Wouter
tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023)
Pillai, Alexander N.; Hladish, Thomas; Pearson, Carl A. B.; Toh, Ben; Noah4944; Stoltzfus, Arlin
kieshaprem/synthetic-contact-matrices. (2021)
Prem, Kiesha
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel
rachaelpung/covid_missed_infections. (2023)
Pung, Rachael
rachaelpung/serial_interval_covid_b.1.617.2. (2021)
Pung, Rachael
cmmid/covid_quar_test_import_risk. (2021)
Quilty, Billy
cmmid/quar_test_contact_tracing. (2021)
Quilty, Billy
R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". (2021)
Quilty, Billy J; Hellewell, Joel; Clifford, Samuel; CMMID COVID-19 working group
description
Data for: "The impact of COVID-19 on clinical research for Neglected Tropical Diseases (NTDs): A case study of bubonic plague". (2021)
Rasoanaivo, Tsinjo Fehizoro; Bourner, Josephine; Randriamparany, Ravaka Niaina; Gamana, Théodora Mayouya; Andrianaivoarimanana, Voahangy; Raherivelo, Mily Harijaona; Randriamampionona, Harivelo; Rajerison, Minoarisoa; Raberahona, Mihaja; Salam, Alex Paddy; Edwards, Tansy; Olliaro, Piero L.; Randremanana, Rindra Vatosoa
Data for: "Vaccine Confidence and Hesitancy at the start of COVID-19 vaccine deployment in the UK: An embedded mixed-methods study". (2021)
Roberts, Chrissy; Brindle, Hannah; Rogers, Nina; Eggo, Rosalind M.; Enria, Luisa; Lees, Shelley
description
rmjlros/COVID19_care_home_NPIs. (2021)
Rosello, Alicia; Abbott, Sam; Barnard, Rosanna C.
Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020)
Russell, Timothy W.; Golding, Nick; Hellewell, Joel; Abbott, Sam; Pearson, Carl A B; Van zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.; CMMID COVID-19 working group
thimotei/CFR_calculation. (2020)
Russell, Timothy W.; Hellewell, Joel; Abbott, Sam; Jarvis, Christopher; Zandvoort, Kevin van; Ratnayake, Ruwan; CMMID nCov working group; Flasche, Stefan; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.
Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020)
Russell, Timothy W.; Hellewell, Joel; Jarvis, Christopher I.; Van-Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Flasche, Stefan; Eggo, Rosalind M; Kucharski, Adam J.
thimotei/covid_travel_restrictions. (2020)
Russell, Timothy W.; Wu, Joseph T; Clifford, Samuel; CMMID COVID-19 working group; Edmunds, W John; Kucharski, Adam J.; Jit, Mark
fsera/COVIDWeather. (2021)
Sera, Francesco; Abbott, Sam; Roye, Dominic
epiforecasts/rt-comparison-uk-public: v1.0.0. (2020)
Sherratt, Katharine
covid19-forecast-hub-europe/euro-hub-ensemble: Zenodo release. (2022)
Sherratt, Katharine; Funk, Sebastian
The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 11) - Data. (2021)
Simons, David; Shahab, Lion; Brown, Jamie; Perski, Olga
STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021)
Strongman, Helen; Carreira, Helena
folder_zip
johntaz/COVID-Collateral. (2020)
Tazare, John
opensafely/post-covid-outcomes-research. (2022)
Tazare, John; Walker, Alex
COVID-19 risk group - Neurological disease codelist. (2020)
Thomas, Sara
description
Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. (2020)
Tomlinson, Laurie A.; Iwagami, Masao; Bidulka, Patrick; Wong, Angel Y.S.
National Survey of Sexual Attitudes and Lifestyles COVID-19 Study, 2020. (2021)
University of Glasgow, MRC/CSO Social and Public Health Sciences; University College London; London School of Hygiene and Tropical Medicine
Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. (2021)
Uyoga, Sophie; Adetifa, Ifedayo M.O.; Otiende, Mark; Gitonga, John N.; Mugo, Daisy; Nyagwange, James; Karanja, Henry Kibe; Tuju, James; Makale, Johnstone; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng’ang’a, Wangari; Chege, Evelynn; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W.; Gallagher, Katherine E.; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Mwangangi, Joseph; Bejon, Philip; Ochola-Oyier, Lynette I.; Warimwe, George M.; Agweyu, Ambrose; Scott, J. Anthony G.
COVID-19 vaccine development pipeline. (2020)
Vaccine Centre
UK prevalence of risk factors for severe COVID-19 disease, by age and region: point prevalence estimates in 2019 and 2014, using electronic health records. (2020)
Walker, Jemma; Grint, Daniel; Strongman, Helen; Eggo, Rosalind M.; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E.; Rentsch, Christopher; Douglas, Ian J.; Mathur, Rohini; Wong, Angel; Quint, Jennifer K.; Andrews, Nick; Lopez-bernal, James; Scott, Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen
folder_zip
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin; Stark, Ariane; Evan Ray; Bosse, Nikos; Reich, Nicholas G; Sherratt, Katharine; Shah, Apurv; Wattanachit, Nutcha; Khoale1096; Huang, Yuxin David; Gerding, Aaron; Gruson, Hugo; Cramer, Estee; Shandross, Li; Abbott, Sam; Funk, Sebastian
cmmid/coronavirus_immunity. (2021)
Waterlow, Naomi R.; Van Leeuwen, Edwin; Davies, Nicholas; Flasche, Stefan; Eggo, Rosalind M.
opensafely/risk-factors-research. (2020)
Williamson, Elizabeth; Walker, Alex J; Bhaskaran, Krishnan J; Bacon, Seb; Bates, Chris; Morton, Caroline E; Curtis, Helen J; Mehrkar, Amir; Evans, David; Inglesby, Peter; Cockburn, Jonathan; Mcdonald, Helen I; MacKenna, Brian; Tomlinson, Laurie; Douglas, Ian J; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Grieve, Richard; Harrison, David; Forbes, Harriet; Schultze, Anna; Croker, Richard T; Parry, John; Hester, Frank; Harper, Sam; Perera, Rafael; Evans, Stephen; Smeeth, Liam; Goldacre, Ben
opensafely/anticoagulants-research. (2021)
Wong, Angel; Bacon, Seb; Walker, Alex; Davy, Simon; Inglesby, Peter; MacKenna, Brian
Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread. (2021)
Wu, Joseph T.; Mei, Shujiang; Luo, Sihui; Leung, Kathy; Liu, Di; Lv, Qiuying; Liu, Jian; Li, Yuan; Prem, Kiesha; Jit, Mark; Weng, Jianping; Feng, Tiejian; Zheng, Xueying; Leung, Gabriel M.
lwyakob/COVIDquarantine. (2021)
Yakob, Laith
lwyakob/COVIDsaturates. (2020)
Yakob, Laith; Nightingale, Emily
covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022)
actions-user; Sherratt, Katharine; Gruson, Hugo; Funk, Sebastian; Bracher, Johannes; BIOCOM-SC; Walraven, Robert; miraanto; h-veronika; Rodiah, Isti; gr3gr3; Kraus, David; hgurung-iem; epiforecasts-bot; Xu, Frost Tianjian; Heyder, Stefan; aniruddhadiga; Abbott, Sam; Sun, Tao; Mingio, Marco; Deuschel, Jannik; pmontman; janezz25; neele-itwm; Gibson, Graham; EpiGraph; Tarantino, Barbara; Karlen, Dean; Bhatia, Sangeeta; borjarv