LSHTM Organisational Structure (3749)
Faculty of Infectious and Tropical Diseases (1005)
Dept of Pathogen Molecular Biology (-2019) (99)
Number of items at this level: 99.
A
SnoopCGH. (2009)
Almagro-Garcia, Jacob; Clark, Taane
Consistent signatures of selection from genomic analysis of pairs of temporal and spatial Plasmodium falciparum populations from The Gambia. (2018)
Amambua-Ngwa, Alfred; Jeffries, David; Amato, Roberto; Worwui, Archibald; Karim, Mane; Ceesay, Sukai; Nyang, Haddy; Nwakanma, Davis; Okebe, Joseph; Kwiatkowski, Dominic; Conway, David J.; D'Alessandro, Umberto
Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017)
Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jackie M.; Clark, Taane; Hibberd, Martin
Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. (2016)
Ansari, Hifzur Rahman; Templeton, Thomas J.; Subudhi, Amit Kumar; Ramaprasad, Abhinay; Tang, Jianxia; Lu, Feng; Naeem, Raeece; Hashish, Yasmeen; Oguike, Mary C.; Benavente, Ernest Diez; Clark, Taane G.; Sutherland, Colin J.; Barnwell, John W.; Culleton, Richard; Cao, Jun; Pain, Arnab
Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. (2011)
Arnvig, Kristine B.; Comas, Iñaki; Thomson, Nicholas R.; Houghton, Joanna; Boshoff, Helena I.; Croucher, Nicholas J.; Rose, Graham; Perkins, Timothy T.; Parkhill, Julian; Dougan, Gordon; Young, Douglas B.
B
PhyloTrack. (2015)
Benavente, Ernest; Coll, Francesc; Furnham, Nick; Mcnerney, Ruth; Glynn, Judith; Campino, Susana; Pain, Arnab; Mohareb, Fady R; Clark, Taane
Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. (2019)
Boinett, Christine J.; Cain, Amy K.; Hawkey, Jane; Do Hoang, Nhu Tran; Khanh, Nhu Nguyen Thi; Thanh, Duy Pham; Dordel, Janina; Campbell, James I.; Lan, Nguyen Phu Huong; Mayho, Matthew; Langridge, Gemma C.; Hadfield, James; Chau, Nguyen Van Vinh; Thwaites, Guy E.; Parkhill, Julian; Thomson, Nicholas R.; Holt, Kathryn E.; Baker, Stephen
Global Profiling of Proteolysis during Rupture of Plasmodium falciparum from the Host Erythrocyte. (2010)
Bowyer, Paul; Simon, Gabriel M; Cravatt, Benjamin F; Bogyo, Matthew
Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. (2013)
Bronowski, Christina; Fookes, Maria C.; Gilderthorp, Ruth; Ashelford, Kevin E.; Harris, Simon R.; Phiri, Amos; Hall, Neil; Gordon, Melita A.; Wain, John; Hart, Charles A.; Wigley, Paul; Thomson, Nicholas R.; Winstanley, Craig
C
DNAPlotter: circular and linear interactive genome visualization. (2009)
Carver, Tim; Thomson, Nick; Bleasby, Alan; Berriman, Matthew; Parkhill, Julian
PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. (2016)
Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S. Cenk; Shimizu, Chisato; Burns, Jane C.; Wright, Victoria J.; Png, Eileen; Hibberd, Martin L.; Lloyd, David D.; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S.; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila
Influence of malaria transmission intensity and the 581G mutation on the efficacy of intermittent preventive treatment in pregnancy: systematic review and meta-analysis. (2015)
Chico, Matthew; Cano, Jorge; Ariti, Cono; Collier, Timothy; Chandramohan, Daniel; Roper, Cally; Greenwood, Brian
Design of a variant surface antigen-supplemented microarray chip for whole transcriptome analysis of multiple Plasmodium falciparum cytoadherent strains, and identification of strain-transcendent rif and stevor genes: Additional files. (2011)
Claessens, Antoine; Ghumra, Ashfaq; Gupta, Archna P; Mok, Sachel; Bozdech, Zbynek; Rowe, J Alexandra
Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis. (2014)
Claessens, Antoine; Hamilton, William L; Kekre, Mihir; Otto, Thomas D; Faizullabhoy, Adnan; Rayner, Julian C; Kwiatkowski, Dominic
Tuberculosis Patients Blood Gene Expression Through Treatment. (2012)
Cliff, Jackie; Lee, Ji-Sook; Constantinou, Nicholas; Cho, Jang-Eun; Clark, Taane G.; Ronacher, Katharina; King, Elizabeth C.; Lukey, Pauline T.; Duncan, Ken; Van Helden, Paul D.; Walzl, Gerhard; Dockrell, Hazel M.
Tuberculosis Patients Blood Gene Expression Through Treatment (cured and end-of-treatment patients). (2012)
Cliff, Jackie; Lee, Ji-Sook; Constantinou, Nicholas; Cho, Jang-Eun; Clark, Taane G.; Ronacher, Katharina; King, Elizabeth C.; Lukey, Pauline T.; Duncan, Ken; Van Helden, Paul D.; Walzl, Gerhard; Dockrell, Hazel M.
Mycobacterium tuberculosis Nonthaburi genotype raw reads. (2016)
Coker, Olabisi Oluwabukola; Chaiprasert, Angkana; Ngamphiw, Chumpol; Tongsima, Sissades; Regmi, Sanjib Mani; Clark, Taane; Ong, Rick Twee Hee; Teo, Yik-Ying; Prammananan, Therdsak; Palittapongarnpim, Prasit
In Silico Spoligotyping. (2012)
Coll, Francesc; Mallard, K; Preston, MD; Bentley, S; Parkhill, Julian; Mcnerney, Ruth; Martin, N; Clark, Taane
Data for: "A robust SNP barcode for typing Mycobacterium tuberculosis complex strains". (2014)
Coll, Francesc; Mcnerney, Ruth; Guerra-Assunção, José Afonso; Glynn, Judith R.; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Pain, Arnab; Martin, Nigel; Clark, Taane G.
description
TB Profiler. (2015)
Coll, Francesc; Mcnerney, Ruth; Preston, Mark D.; Guerra-assunção, José Afonso; Warry, Andrew; Hill-Cawthorne, Grant; Mallard, Kim; Nair, Mridul; Miranda, Anabela; Alves, Adriana; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Hasan, Zahra; Hasan, Rumina; Glynn, Judith; Martin, Nigel; Pain, Arnab; Clark, Taane
folder_zip
PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. (2014)
Coll, Francesc; Preston, Mark; Guerra-Assunção, José Afonso; Hill-Cawthorn, Grant; Harris, David; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Drobniewski, Francis; Gagneux, Sebastien; Glynn, Judith R.; Pain, Arnab; Parkhill, Julian; McNerney, Ruth; Martin, Nigel; Clark, Taane
Region specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae. (2015)
Cornick, Jennifer E.; Chaguza, Chrispin; Harris, Simon R.; Yalcin, Feyruz; Senghore, Madikay; Kiran, Anmol M.; Govindpershad, Shanil; Ousmane, Sani; Plessis, Mignon Du; Pluschke, Gerd; Ebruke, Chinelo; McGee, Lesley; Sigaùque, Beutel; Collard, Jean-Marc; Antonio, Martin; von Gottberg, Anne; French, Neil; Klugman, Keith P.; Heyderman, Robert S.; Bentley, Stephen D.; Everett, Dean B.
Whole genome sequencing of Mycobacterium tuberculosis strains resistant to D-cycloserine. (2018)
Cortes, Teresa; Carvalho, Luiz
Time course RNA-seq of Mycobacterium tuberculosis exposed to nitric oxide. (2017)
Cortes, Teresa; Schubert, Olga T.; Banaei-Esfahani, Amir; Collins, Ben C.; Aebersold, Ruedi; Young, Douglas B.
Decoding the network of Trypanosoma brucei proteins that determines sensitivity to apolipoprotein-L1. (2018)
Currier, Rachel B.; Cooper, Anneli; Burrell-saward, Hollie; MacLeod, Annette; Alsford, Sam
Unusual stability of messenger RNA in snake venom reveals gene expression dynamics of venom replenishment. (2012)
Currier, Rachel; Calvete, Juan J; Sanz, Libia; Harrison, Robert A; Rowley, Paul D; Wagstaff, Simon C
D
Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. (2017)
Diez Benavente, Ernest; Florez de Sessions, Paola; Moon, Robert W.; Holder, Anthony A.; Blackman, Michael J.; Roper, Cally; Drakeley, Christopher J.; Pain, Arnab; Sutherland, Colin J.; Hibberd, Martin L.; Campino, Susana; Clark, Taane G.
Dhaka household cholera dataset. (2018)
Domman, Daryl; Chowdhury, Fahima; Khan, Ashraful I.; Dorman, Matthew J.; Mutreja, Ankur; Uddin, Muhammad Ikhtear; Paul, Anik; Begum, Yasmin A.; Charles, Richelle C.; Calderwood, Stephen B.; Bhuiyan, Taufiqur R.; Harris, Jason B.; LaRocque, Regina C.; Ryan, Edward T.; Qadri, Firdausi; Thomson, Nicholas R.
Integrated view of Vibrio cholerae in the Americas. (2017)
Domman, Daryl; Quilici, Marie-Laure; Dorman, Matthew J.; Njamkepo, Elisabeth; Mutreja, Ankur; Mather, Alison E.; Delgado, Gabriella; Morales-Espinosa, Rosario; Grimont, Patrick A. D.; Lizárraga-Partida, Marcial Leonardo; Bouchier, Christiane; Aanensen, David M.; Kuri-Morales, Pablo; Tarr, Cheryl L.; Dougan, Gordon; Parkhill, Julian; Campos, Josefina; Cravioto, Alejandro; Weill, François-Xavier; Thomson, Nicholas R.
Supporting data for 'High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139'. (2019)
Dorman, Matthew J; Domman, Daryl; Uddin, Muhammad Ikhtear; Sharmin, Salma; Hassan Afrad, Mokibul; Begum, Yasmin Ara; Qadri, Firdausi; Thomson, Nicholas R
Bacteria genomic rates data: First release. (2016)
Duchêne, Sebastian; Holt, Kathryn E.; Weill, François-Xavier; Le Hello, Simon; Hawkey, Jane; Edwards, David J.; Fourment, Mathieu; Holmes, Edward C.
F
Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". (2021)
Fennell, Thea G.; Blackwell, Grace A.; Thomson, Nicholas R.; Dorman, Matthew J.
Phosphodiesterase beta is the master regulator of cAMP signalling during malaria parasite invasion. (2019)
Flueck, Christian; Drought, Laura G.; Jones, Andrew; Patel, Avnish; Perrin, Abigail J.; Walker, Eloise M.; Nofal, Stephanie D.; Snijders, Ambrosius P.; Blackman, Michael J.; Baker, David A.
G
Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia. (2015)
Getachew, Sisay; To, Sheren; Trimarsanto, Hidayat; Thriemer, Kamala; Clark, Taane; Petros, Beyene; Aseffa, Abraham; Price, Ric N; Auburn, Sarah
grid_on
Defining the genes required for survival of Mycobacterium bovis in the bovine host offers novel insights into the genetic basis of survival of pathogenic mycobacteria. (2022)
Gibson, Amanda Jane; Stiens, Jennifer; Passmore, Ian J.; Faulkner, Valwynne; Miculob, Josephous; Willcocks, Sam; Coad, Michael; Berg, Stefan; Werling, Dirk; Wren, Brendan W; Nobeli, Irene; Villarreal-Ramos, Bernardo; Kendall, Sharon Louise
Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents. (2018)
Giuliani, Sandra; Silva, Arthur C.; Borba, Joyce V. V. B.; Ramos, Pablo I. P.; Paveley, Ross A.; Muratov, Eugene N.; Andrade, Carolina Horta; Furnham, Nicholas
Data from: Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity. (2018)
Gonçalves, Bronner P.; Kapulu, Melissa C.; Sawa, Patrick; Guelbéogo, Wamdaogo M.; Tiono, Alfred B.; Grignard, Lynn; Stone, Will J. R.; Hellewell, Joel; Lanke, Kjerstin; Bastiaens, Guido J. H.; Bradley, John; Nébié, Issa; Ngoi, Joyce M.; Oriango, Robin; Mkabili, Dora; Nyaurah, Maureen; Midega, Janet; Wirth, Dyann F.; Marsh, Kevin; Churcher, Thomas S.; Bejon, Philip; Sirima, Sodiomon B.; Drakeley, Chris; Bousema, Teun
Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. (2021)
Gröschel, Matthias I.; Owens, Martin; Freschi, Luca; Vargas, Roger; Marin, Maximilian G.; Phelan, Jody; Iqbal, Zamin; Dixit, Avika; Farhat, Maha R.
The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance. (2016)
Gundogdu, Ozan; Da Silva, Daiani Teixeira; Mohammad, Banaz; Elmi, Abdi; Wren, Brendan W.; van Vliet, Arnoud H. M.; Dorrell, Nick
H
Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. (2018)
Herman, Lou S.; Fornace, Kimberly; Phelan, Jody; Grigg, Matthew J.; Anstey, Nicholas M.; William, Timothy; Moon, Robert W.; Blackman, Michael J.; Drakeley, Chris J.; Tetteh, Kevin K. A.
MatthewHiggins2017/PanPlasmodiumRPALFManuscript. (2024)
Higgins, Matthew
MatthewHiggins2017/bioconda-PrimedRPA. (2022)
Higgins, Matthew
Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. (2018)
Holt, Kathryn E.; Wyres, Kelly
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. (2008)
Holt, Kathryn E; Parkhill, Julian; Mazzoni, Camila J; Roumagnac, Philippe; Weill, François-Xavier; Goodhead, Ian; Rance, Richard; Baker, Stephen; Maskell, Duncan J; Wain, John; Dolecek, Christiane; Achtman, Mark; Dougan, Gordon
K
Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. (2017)
Kallonen, Teemu; Brodrick, Hayley J.; Harris, Simon R.; Corander, Jukka; Brown, Nicholas M.; Martin, Veronique; Peacock, Sharon J.; Parkhill, Julian
Phylogenetic position of Leishmania isolates from Khyber Pakhtunkhwa province of Pakistan. (2016)
Khan, Nazma Habib; Messenger, Louisa A.; Wahid, Sobia; Sutherland, Colin J.
description
Datasets for the study “Sustainable Programme Incorporating Nutrition & Games (SPRING): a multi-country-randomised controlled trial”. (2023)
Kirkwood, Betty; Roy, Reetabrata; Bhopal, Sunil; Soremekun, Seyi
Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. (2016)
Kretzschmar, Mirjam E. E.; Tosas Auguet, Olga; Betley, Jason R.; Stabler, Richard; Patel, Amita; Ioannou, Avgousta; Marbach, Helene; Hearn, Pasco; Aryee, Anna; Goldenberg, Simon D.; Otter, Jonathan A.; Desai, Nergish; Karadag, Tacim; Grundy, Chris; Gaunt, Michael; Cooper, Ben S.; Edgeworth, Jonathan D.; Kypraios, Theodore
adamkucharski/fiji-denv3-2014. (2018)
Kucharski, Adam J; Kama, Mike; Watson, Conall H; Aubry, Maite; Funk, Sebastian; Henderson, Alasdair D; Brady, Oliver J; Vanhomwegen, Jessica; Manuguerra, Jean-Claude; Lau, Colleen L; Edmunds, W John; Aaskov, John; Nilles, Eric James; Cao-Lormeau, Van-Mai; Hue, Stephane; Hibberd, Martin L
L
Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. (2014)
Lindgreen, Stinus; Umu, Sinan Uğur; Lai, Alicia Sook-Wei; Eldai, Hisham; Liu, Wenting; McGimpsey, Stephanie; Wheeler, Nicole E.; Biggs, Patrick J.; Thomson, Nick R.; Barquist, Lars; Poole, Anthony M.; Gardner, Paul P.
Analysis of Clostridium difficile Ribotype 023 strains reveals the recent emergence of a highly related virulent clade with unique characteristics. (2019)
London School of Hygiene & Tropical Medicine
Mus musculus. (2016)
London School of Hygiene & Tropical Medicine
Proteromonas lacertae. (2010)
London School of Hygiene & Tropical Medicine
M
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination. (2018)
M. C. Lam, Margaret; Wyres, Kelly L.; Duchêne, Sebastian; Wick, Ryan R.; Judd, Louise M.; Gan, Yunn-Hwen; Hoh, Chu-Han; Archuleta, Sophia; Molton, James S.; Kalimuddin, Shirin; Koh, Tse Hsien; Passet, Virginie; Brisse, Sylvain; Holt, Kathryn E.
Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? (2019)
Martinez-Vega, Rosario; Jauneikaite, Elita; Thoon, Koh Cheng; Chua, Hui Ying; Huishi Chua, Amanda; Khong, Wei Xin; Tan, Ban Hock; Low Guek Hong, Jenny; Venkatachalam, Indumathi; Anantharajah Tambyah, Paul; Hibberd, Martin L.; Clarke, Stuart C.; Ng, Oon Tek
Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. (2016)
Martinón-Torres, Federico; Png, Eileen; Khor, Chiea Chuen; Davila, Sonia; Wright, Victoria J.; Sim, Kar Seng; Vega, Ana; Fachal, Laura; Inwald, David; Nadel, Simon; Carrol, Enitan D.; Martinón-Torres, Nazareth; Alonso, Sonia Marcos; Carracedo, Angel; Morteruel, Elvira; López-Bayón, Julio; Torre, Andrés Concha; Monge, Cristina Calvo; de Aguilar, Pilar Azcón González; Torné, Elisabeth Esteban; Martínez-Padilla, María del Carmen; Martinón-Sánchez, José María; Levin, Michael; Hibberd, Martin L.; Salas, Antonio
MOESM1 of Insecticide resistance in Anopheles arabiensis from Ethiopia (2012-2016): a nationwide study for insecticide resistance monitoring. (2017)
Messenger, Louisa A.; Shililu, Josephat; Irish, Seth R.; Anshebo, Gedeon Yohannes; Tesfaye, Alemayehu Getachew; Ye-Ebiyo, Yemane; Chibsa, Sheleme; Dengela, Dereje; Dissanayake, Gunawardena; Kebede, Estifanos; Zemene, Endalew; Asale, Abebe; Yohannes, Mekonnen; Taffese, Hiwot Solomon; George, Kristen; Fornadel, Christen; Seyoum, Aklilu; Wirtz, Robert A.; Yewhalaw, Delenasaw
Data from: Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal. (2015)
Messenger, Louisa; Garcia, Lineth; Vanhove, Mathieu; Huaranca, Carlos; Bustamante, Marinely; Torrico, Marycruz; Torrico, Faustino; Miles, Michael; Llewellyn, Martin
Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. (2015)
Mobegi, Victor; Duffy, Craig; Amambua-Ngwa, Alfred; Loua, Kovana M; Laman, Eugene; Nwakanma, Davis C; MacInnis, Bronwyn; Aspeling-jones, Harvey; Murray, Lee; Clark, Taane; Kwiatkowski, Dominic P; Conway, David
grid_on
Data for: "Investigations into the within-host genomic diversity and
phenotypic variation of Plasmodium falciparum". (2017)
Murray, Lee
description
Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. (2019)
Musicha, Patrick; Msefula, Chisomo L; Mather, Alison E; Chaguza, Chrispin; Cain, Amy K; Peno, Chikondi; Kallonen, Teemu; Khonga, Margaret; Denis, Brigitte; Gray, Katherine J; Heyderman, Robert S; Thomson, Nicholas R; Everett, Dean B; Feasey, Nicholas A
P
No evidence for higher risk of cancer in patients with multiple sclerosis taking cladribine: Data supplement. (2015)
Pakpoor, Julia; Disanto, Giulio; Altmann, Daniel; Pavitt, Sue; Turner, Benjamin P; Marta, Monica; Juliusson, Gunnar; Baker, David; Chataway, Jeremy; Schmierer, Klaus
Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018)
Palittapongarnpim, Prasit; Ajawatanawong, Pravech; Viratyosin, Wasna; Smittipat, Nat; Disratthakit, Areeya; Mahasirimongkol, Surakameth; Yanai, Hideki; Yamada, Norio; Nedsuwan, Supalert; Imasanguan, Worarat; Kantipong, Pacharee; Chaiyasirinroje, Boonchai; Wongyai, Jiraporn; Toyo-oka, Licht; Phelan, Jody; Parkhill, Julian; Clark, Taane G.; Hibberd, Martin L.; Ruengchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Tongsima, Sissades; Tokunaga, Katsushi
A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. (2009)
Perkins, Timothy T.; Kingsley, Robert A.; Fookes, Maria C.; Gardner, Paul P.; James, Keith D.; Yu, Lu; Assefa, Samuel A.; He, Miao; Croucher, Nicholas J.; Pickard, Derek J.; Maskell, Duncan J.; Parkhill, Julian; Choudhary, Jyoti; Thomson, Nicholas R.; Dougan, Gordon
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. (2017)
Perrin, Amandine; Larsonneur, Elise; Nicholson, Ainsley C.; Edwards, David J.; Gundlach, Kristin M.; Whitney, Anne M.; Gulvik, Christopher A.; Bell, Melissa E.; Rendueles, Olaya; Cury, Jean; Hugon, Perrine; Clermont, Dominique; Enouf, Vincent; Loparev, Vladimir; Juieng, Phalasy; Monson, Timothy; Warshauer, David; Elbadawi, Lina I.; Walters, Maroya Spalding; Crist, Matthew B.; Noble-Wang, Judith; Borlaug, Gwen; Rocha, Eduardo P. C.; Criscuolo, Alexis; Touchon, Marie; Davis, Jeffrey P.; Holt, Kathryn E.; McQuiston, John R.; Brisse, Sylvain
Dataset and code underpinning "Classification of lapses in smokers attempting to stop: A supervised machine learning approach using data from a popular smartphone application.". (2023)
Perski, Olga; Simons, David
Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015)
Phelan, Jody; Coll, Francesc; Mcnerney, Ruth; Ascher, David B.; Pires, Douglas E. V.; Furnham, Nick; Coeck, Nele; Hill-Cawthorne, Grant A.; Nair, Mridul B.; Mallard, Kim; Ramsay, Andrew; Campino, Susana; Hibberd, Martin; Pain, Arnab; Rigouts, Leen; Clark, Taane
description
VCF Viewer (VARB). (2012)
Preston, Mark D.; Manske, M; Horner, N; Assefa, S; Campino, S; Auburn, S; Zongo, I; Ouedraogo, JB; Nosten, F; Anderson, T; Clark, Taane
Transcription profiling of Burkholderia pseudomallei under salt stress and the effect on a type III secretion system. (2014)
Pumirat, Pornpan; Cuccui, Jon; Stabler, Richard; Stevens, Joanne M; Muangsombut, Veerachat; Singsuksawat, Ekapot; Stevens, Mark P; Wren, Brendan; Korbsrisate, Sunee
R
Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids. (2018)
Roman, Fabiola; Iñiguez, Alena M.; Yeo, Matthew; Jansen, Ana M.
Surveys of the Sustainable Programme Incorporating Nutrition & Games 2012-2017. (2023)
Roy, Reetabrata; Sikander, Siham; Soremekun, Seyi
The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. (2017)
Ruis, Christopher; Roy, Sunando; Brown, Julianne R.; Allen, David J.; Goldstein, Richard A.; Breuer, Judith
S
Genome-wide and protein kinase-focused RNAi screens reveal conserved and novel damage response pathways in Trypanosoma brucei. (2017)
Sabatini, Robert; Stortz, Jennifer A.; Serafim, Tiago D.; Alsford, Sam; Wilkes, Jonathan; Fernandez-Cortes, Fernando; Hamilton, Graham; Briggs, Emma; Lemgruber, Leandro; Horn, David; Mottram, Jeremy C.; McCulloch, Richard
Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. (2018)
Sepúlveda, Nuno; Phelan, Jody; Diez-Benavente, Ernest; Campino, Susana; Clark, Taane G.; Hopkins, Heidi; Sutherland, Colin; Drakeley, Chris J.; Beshir, Khalid B.
DidDrog11/Lassa_phylogeography. (2023)
Simons, David
DidDrog11/arenavirus_hantavirus_app. (2023)
Simons, David
DidDrog11/data_for_gbif: Final version for Gigabyte. (2023)
Simons, David
DidDrog11/scoping_review. (2022)
Simons, David
Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes: Supplementary data. (2009)
Smargiasso, Nicolas; Gabelica, Valérie; Damblon, Christian; Rosu, Frédéric; De Pauw, Edwin; Teulade-Fichou, Marie-Paule; Rowe, Alexandra; Claessens, Antoine
Demonstration data for: "An interactive data visualisation application to investigate nosocomial transmission of infections". (2019)
Smith, Catherine M; Allen, David J.; Nawaz, Sameena; Kozlakidis, Zisis; Nastouli, Eleni; Hayward, Andrew; Ward, Katherine N.
Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018)
Sobkowiak, Benjamin; Glynn, Judith R.; Houben, Rein M. G. J.; Mallard, Kim; Phelan, Jody E.; Guerra-Assunção, José Afonso; Banda, Louis; Mzembe, Themba; Viveiros, Miguel; McNerney, Ruth; Parkhill, Julian; Crampin, Amelia C.; Clark, Taane G.
inSCALE Uganda Impact Evaluation Dataset. (2022)
Soremekun, Seyi
T
Diversity in gene expression profiles captured through highly resolved whole-transcriptome profiling of clinical and laboratory-adapted malaria parasite isolates. (2018)
Tarr, Sarah J.; Conway, David J.
Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. (2017)
The, Hao Chung; Florez de Sessions, Paola; Jie, Song; Pham Thanh, Duy; Thompson, Corinne N; Nguyen Ngoc Minh, Chau; Chu, Collins Wenhan; Tran, Tuan-Anh; Thomson, Nicholas R; Thwaites, Guy E; Rabaa, Maia A; Hibberd, Martin; Baker, Stephen
U
Prevalence of Type VI Secretion System in Spanish Campylobacter jejuni Isolates. (2015)
Ugarte-Ruiz, M; Stabler, Richard; Domínguez, L; Domínguez, L; Wren, Brendan; Dorrell, Nick; Gundogdu, Ozan
Exploring the oxidative, antimicrobial and genomic properties of Campylobacter jejuni strains isolated from poultry. (2018)
Ugarte-Ruiz, Maria; Domínguez, Lucas; Corcionivoschi, Nicolae; Wren, Brendan W.; Dorrell, Nick; Gundogdu, Ozan
V
raphaelvallat/pingouin. (2022)
Vallat, Raphael; Appelhoff, Stefan; Spaak, Eelke; JElfner; systole-docs; Tan, Gansheng; Paulino, Arthur; Dominic C.; Leicas; Nárai, Ádám; Wallan, Samuel; Barthélemy, Quentin; Weixin, Jin; Singaravelan, Karthikeyan; Crabtree, Kyle N.; Punčochář, Michal; Legrand, Nicolas; Jolly, Eshin; Cederstrand, Erik; To, Isaac; Hale, Jeff; Kahle, Michal; Mathot, Sebastiaan; Wase, Viktor; Filipec, Vojtech; gedeck; Libiseller-Egger, Julian; xfz329
Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. (2016)
Van Voorhis, Wesley C.; Adams, John H.; Adelfio, Roberto; Ahyong, Vida; Akabas, Myles H.; Alano, Pietro; Alday, Aintzane; Alemán Resto, Yesmalie; Alsibaee, Aishah; Alzualde, Ainhoa; Andrews, Katherine T.; Avery, Simon V.; Avery, Vicky M.; Ayong, Lawrence; Baker, Mark; Baker, Stephen; Ben Mamoun, Choukri; Bhatia, Sangeeta; Bickle, Quentin; Bounaadja, Lotfi; Bowling, Tana; Bosch, Jürgen; Boucher, Lauren E.; Boyom, Fabrice F.; Brea, Jose; Brennan, Marian; Burton, Audrey; Caffrey, Conor R.; Camarda, Grazia; Carrasquilla, Manuela; Carter, Dee; Belen Cassera, Maria; Chih-Chien Cheng, Ken; Chindaudomsate, Worathad; Chubb, Anthony; Colon, Beatrice L.; Colón-López, Daisy D.; Corbett, Yolanda; Crowther, Gregory J.; Cowan, Noemi; D’Alessandro, Sarah; Le Dang, Na; Delves, Michael; DeRisi, Joseph L.; Du, Alan Y.; Duffy, Sandra; Abd El-Salam El-Sayed, Shimaa; Ferdig, Michael T.; Fernández Robledo, José A.; Fidock, David A.; Florent, Isabelle; Fokou, Patrick V. T.; Galstian, Ani; Gamo, Francisco Javier; Gokool, Suzanne; Gold, Ben; Golub, Todd; Goldgof, Gregory M.; Guha, Rajarshi; Guiguemde, W. Armand; Gural, Nil; Guy, R. Kiplin; Hansen, Michael A. E.; Hanson, Kirsten K.; Hemphill, Andrew; Hooft van Huijsduijnen, Rob; Horii, Takaaki; Horrocks, Paul; Hughes, Tyler B.; Huston, Christopher; Igarashi, Ikuo; Ingram-Sieber, Katrin; Itoe, Maurice A.; Jadhav, Ajit; Naranuntarat Jensen, Amornrat; Jensen, Laran T.; Jiang, Rays H. Y.; Kaiser, Annette; Keiser, Jennifer; Ketas, Thomas; Kicka, Sebastien; Kim, Sunyoung; Kirk, Kiaran; Kumar, Vidya P.; Kyle, Dennis E.; Lafuente, Maria Jose; Landfear, Scott; Lee, Nathan; Lee, Sukjun; Lehane, Adele M.; Li, Fengwu; Little, David; Liu, Liqiong; Llinás, Manuel; Loza, Maria I.; Lubar, Aristea; Lucantoni, Leonardo; Lucet, Isabelle; Maes, Louis; Mancama, Dalu; Mansour, Nuha R.; March, Sandra; McGowan, Sheena; Medina Vera, Iset; Meister, Stephan; Mercer, Luke; Mestres, Jordi; Mfopa, Alvine N.; Misra, Raj N.; Moon, Seunghyun; Moore, John P.; Morais Rodrigues da Costa, Francielly; Müller, Joachim; Muriana, Arantza; Nakazawa Hewitt, Stephen; Nare, Bakela; Nathan, Carl; Narraidoo, Nathalie; Nawaratna, Sujeevi; Ojo, Kayode K.; Ortiz, Diana; Panic, Gordana; Papadatos, George; Parapini, Silvia; Patra, Kailash; Pham, Ngoc; Prats, Sarah; Plouffe, David M.; Poulsen, Sally-Ann; Pradhan, Anupam; Quevedo, Celia; Quinn, Ronald J.; Rice, Christopher A.; Abdo Rizk, Mohamed; Ruecker, Andrea; St. Onge, Robert; Salgado Ferreira, Rafaela; Samra, Jasmeet; Robinett, Natalie G.; Schlecht, Ulrich; Schmitt, Marjorie; Silva Villela, Filipe; Silvestrini, Francesco; Sinden, Robert; Smith, Dennis A.; Soldati, Thierry; Spitzmüller, Andreas; Stamm, Serge Maximilian; Sullivan, David J.; Sullivan, William; Suresh, Sundari; Suzuki, Brian M.; Suzuki, Yo; Swamidass, S. Joshua; Taramelli, Donatella; Tchokouaha, Lauve R. Y.; Theron, Anjo; Thomas, David; Tonissen, Kathryn F.; Townson, Simon; Tripathi, Abhai K.; Trofimov, Valentin; Udenze, Kenneth O.; Ullah, Imran; Vallieres, Cindy; Vigil, Edgar; Vinetz, Joseph M.; Voong Vinh, Phat; Vu, Hoan; Watanabe, Nao-aki; Weatherby, Kate; White, Pamela M.; Wilks, Andrew F.; Winzeler, Elizabeth A.; Wojcik, Edward; Wree, Melanie; Wu, Wesley; Yokoyama, Naoaki; Zollo, Paul H. A.; Abla, Nada; Blasco, Benjamin; Burrows, Jeremy; Laleu, Benoît; Leroy, Didier; Spangenberg, Thomas; Wells, Timothy; Willis, Paul A.
Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. (2015)
Vehkala, Minna; Shubin, Mikhail; Connor, Thomas R; Thomson, Nick; Corander, Jukka
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Genetic flux over time in the Salmonella lineage. (2007)
Vernikos, Georgios S; Thomson, Nicholas R.; Parkhill, Julian
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Influence of LAR and VAR on Para-Aminopyridine Antimalarials Targetting Haematin in Chloroquine-Resistance. Physicochemical and other parameters for the compounds studied. (2016)
Warhurst, David C.; Craig, John C.; Raheem, K. Saki
grid_on
Genomic history of the seventh pandemic of cholera in Africa. (2017)
Weill, François-Xavier; Domman, Daryl; Njamkepo, Elisabeth; Tarr, Cheryl; Rauzier, Jean; Fawal, Nizar; Keddy, Karen H.; Salje, Henrik; Moore, Sandra; Mukhopadhyay, Asish K.; Bercion, Raymond; Luquero, Francisco J.; Ngandjio, Antoinette; Dosso, Mireille; Monakhova, Elena; Garin, Benoit; Bouchier, Christiane; Pazzani, Carlo; Mutreja, Ankur; Grunow, Roland; Sidikou, Fati; Bonte, Laurence; Breurec, Sébastien; Damian, Maria; Njanpop-Lafourcade, Berthe-Marie; Sapriel, Guillaume; Page, Anne-Laure; Hamze, Monzer; Henkens, Myriam; Chowdhury, Goutam; Mengel, Martin; Koeck, Jean-Louis; Fournier, Jean-Michel; Dougan, Gordon; Grimont, Patrick A. D.; Parkhill, Julian; Holt, Kathryn E.; Piarroux, Renaud; Ramamurthy, Thandavarayan; Quilici, Marie-Laure; Thomson, Nicholas R.
Additional file 2 of Genomic surveillance of antimicrobial resistant bacterial colonisation and infection in intensive care patients. (2021)
Wyres, Kelly L.; Hawkey, Jane; Mirčeta, Mirianne; Judd, Louise M.; Wick, Ryan R.; Gorrie, Claire L.; Pratt, Nigel F.; Garlick, Jill S.; Watson, Kerrie M.; Pilcher, David V.; McGloughlin, Steve A.; Abbott, Iain J.; Macesic, Nenad; Spelman, Denis W.; Jenney, Adam W. J.; Holt, Kathryn E.
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The genome of Rhizobium leguminosarum has recognizable core and accessory components. (2006)
Young, J Peter W; Crossman, Lisa C; Johnston, Andrew WB; Thomson, Nick; Ghazoui, Zara F; Hull, Katherine H; Wexler, Margaret; Curson, Andrew RJ; Todd, Jonathan D; Poole, Philip S; Mauchline, Tim H; East, Alison K; Quail, Michael A; Churcher, Carol; Arrowsmith, Claire; Cherevach, Inna; Chillingworth, Tracey; Clarke, Kay; Cronin, Ann; Davis, Paul; Fraser, Audrey; Hance, Zahra; Hauser, Heidi; Jagels, Kay; Moule, Sharon; Mungall, Karen; Norbertczak, Halina; Rabbinowitsch, Ester; Sanders, Mandy; Simmonds, Mark; Whitehead, Sally; Parkhill, Julian
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Transcription profiling of brain, liver and spleen from rats infected with Escherichia coli K1 and treated with capsule-selective endosialidase E. (2014)
Zelmer, Andrea; Martin, Melissa; Gundogdu, Ozan; Birchenough, George; Lever, Rebecca; Wren, Brendan; Luzio, J. Paul; Taylor, Peter W.
Modulation of the Surface Proteome through Multiple Ubiquitylation Pathways in African Trypanosomes: Supporting Information. (2015)
Zoltner, Martin; Leung, Ka Fai; Alsford, Sam; Horn, David; Field, Mark C
