LSHTM Organisational Structure (3746)

Faculty of Epidemiology and Population Health (2441)

Dept of Infectious Disease Epidemiology (-2023) (825) Data Creators(s) Title Item Type No Grouping

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jackie M.; Clark, Taane; Hibberd, Martin

Global and regional prevalence of neural tube defects estimates in 2015: Data sources, methods and results. (2017) Blencowe, Hannah folder_zip

Data from: The impact of hotspot-targeted interventions on malaria transmission in Rachuonyo south district in the western Kenyan highlands: a cluster-randomized controlled trial. (2017) Bousema, Teun; Stresman, Gillian; Baidjoe, Amrish Y.; Bradley, John; Knight, Philip; Stone, William; Osoti, Victor; Makori, Euniah; Owaga, Chrispin; Odongo, Wycliffe; China, Pauline; Shagari, Shehu; Doumbo, Ogobara K.; Sauerwein, Robert W.; Kariuki, Simon; Drakeley, Chris; Stevenson, Jennifer; Cox, Jonathan

Data from: A systematic review and meta-analysis of seroprevalence surveys of ebolavirus infection. (2017) Bower, Hilary; Glynn, Judith description

Nasopharyngeal bacterial load as a marker for rapid and easy diagnosis of invasive pneumococcal disease in children from Mozambique: Supporting data for the manuscript results. (2017) Brotons, Pedro; Bassat, Quique; Lanaspa, Miguel; Henares, Desiree; Perez-Arguello, Amaresh; Madrid, Lola; Balcells, Reyes; Acacio, Sozinho; Andres-Franch, Maria; Marcos, Maria Angeles; Valero-Rello, Ana; Muñoz-Almagro, Carmen

Data for: "Does azithromycin given to women in labour decrease ocular bacterial infection in neonates? A double-blind, randomized trial". (2017) Burr, Sarah E.; Camara, Bully; Oluwalana, Claire; Bojang, Ebrima; Bottomley, Christian; Bojang, Abdoulie; Bailey, Robin L.; D'Alessandro, Umberto; Roca, Anna description

Maternal perception & BMI [complete no dates]. (2017) Carrillo-Larco, Rodrigo M.; Bernabe-ortiz, Antonio; Miranda, J. Jaime; Xue, Hong; Wang, Youfa

The impact of an intervention to introduce malaria rapid diagnostic tests on fever case management in a high transmission setting in Uganda: A mixed-methods cluster-randomized trial (PRIME). (2017) Chandler, Clare; Webb, Emily L.; Maiteki-Sebuguzi, Catherine; Nayiga, Susan; Nabirye, Christine; Diliberto, Deborah; Ssemmondo, Emmanuel; Dorsey, Grant; Kamya, Moses R.; Staedke, Sarah G.

Additional file 3: of Investigating the pertussis resurgence in England and Wales, and options for future control. (2017) Choi, Yoon Hong; Campbell, Helen; Amirthalingam, Gayatri; Van Hoek, Albert Jan; Miller, Elizabeth folder_zip

Additional file 1: of Investigating the pertussis resurgence in England and Wales, and options for future control. (2017) Choi, Yoon; Campbell, Helen; Amirthalingam, Gayatri; Van Hoek, Albert Jan; Miller, Elizabeth

Alive & Thrive Evaluation in Burkina Faso: baseline data. (2017) Cresswell, Jenny; Ganaba, Rasmané; Sarrassat, Sophie; Cousens, Simon; Somé, Henri; Diallo, Abdoulaye Hama; Filippi, Veronique folder_zip

Zambia Signal Functions study 2016 dataset. (2017) Dennis, Mardieh; Chelwa, Nachela; Owolabi, Onikepe; Cresswell, Jenny; Filippi, Veronique; Campbell, Oona folder_zip

Pathways to increased coverage: an analysis of time trends in contraceptive need and use among adolescents and young women in Kenya, Rwanda, Tanzania, and Uganda. (2017) Dennis, Mardieh; Radovich, Emma; Wong, Kerry; Owolabi, Onikepe; Cavallaro, Francesca; Mbizvo, Michael T.; Binagwaho, Agnes; Waiswa, Peter; Lynch, Caroline; Benova, Lenka

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. (2017) Diez Benavente, Ernest; Florez de Sessions, Paola; Moon, Robert W.; Holder, Anthony A.; Blackman, Michael J.; Roper, Cally; Drakeley, Christopher J.; Pain, Arnab; Sutherland, Colin J.; Hibberd, Martin L.; Campino, Susana; Clark, Taane G.

Malawi - Karonga HDSS INDEPTH Core Dataset 2003-2015 (Release 2017). (2017) Dube, Albert; Crampin, Amelia C.

iGugu Main Study Data PLOS Medicine. (2017) Francis, Suzanna C

Early morning urine collection to improve urinary lateral flow LAM assay sensitivity in hospitalised patients with HIV-TB co-infection. (2017) Gina, Phindile; Randall, Philippa J.; Muchinga, Tapuwa E.; Pooran, Anil; Meldau, Richard; Peter, Jonny G.; Dheda, Keertan

Asymptomatic infection and family contact patterns in households of Ebola Virus Disease survivors, Sierra Leone 2015. (2017) Glynn, Judith R.; Bower, Hilary; Houlihan, Catherine; Oza, Shefali; Checchi, Francesco; Johnson, Sembia; Turay, Cecilia; Sesay, Daniel; Mansaray, Saidu H.; Kamara, Osman; Kamara, Joshua A.; Bangura, Mohamed S.; Montesano, Carla; Dicks, Steve; Samuel, Dhan; Tedder, Richard; Sebba, Charles description

Evaluation of a Smartphone Decision-Support Tool for Diarrheal Disease Management in a Resource-Limited Setting. (2017) Haque, Farhana; Ball, Robyn L; Khatun, Selina; Ahmed, Mujaddeed; Kache, Saraswati; Chisti, Mohammod Jobayer; Sarker, Shafiqul Alam; Maples, Stace D; Pieri, Dane; Korrapati, Teja Vardhan; Sarnquist, Clea; Federspiel, Nancy; Rahman, Muhammad Waliur; Andrews, Jason R; Rahman, Mahmudur; Nelson, Eric Jorge

A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial. (2017) Hayes, Richard; Floyd, Sian; Schaap, Ab; Shanaube, Kwame; Bock, Peter; Sabapathy, Kalpana; Griffith, Sam; Donnell, Deborah; Piwowar-Manning, Estelle; El-Sadr, Wafaa; Beyers, Nulda; Ayles, Helen; Fidler, Sarah desktop_windows

rbi: R Interface to LibBi. (2017) Jacob, Pierre E.; Lee, Anthony; Murray, Lawrence; Funk, Sebastian

Replication Data for: Crude childhood vaccination coverage in West Africa: trends and predictors of completeness. (2017) Kazungu, Jacob S.; Adetifa, Ifedayo

Antiretroviral therapy, high-risk human papillomavirus and cervical intraepithelial neoplasia: a systematic review and meta-analysis. (2017) Kelly, Helen; Weiss, Helen; Benavente Moreno, Yolanda; de Sanjose, Silvia; Mayaud, Philippe

Read Code List - Arrhythmia. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie description

Code lists for: "Acute kidney injury and infections in patients taking antihypertensive drugs: a self-controlled case series analysis". (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A.

ICD-10 Code List - Arrhythmia. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Cardiac Failure. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Diabetes Mellitus. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - ESRD. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Hypertension. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Ischaemic Heart Disease. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

OPCS Code List - ESRD. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Cardiac Failure. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. code

Read Code List - ESRD. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Gastroenteritis. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Hypertension. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Ischaemic Heart Disease. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Lower Respiratory Tract Infection. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Urinary Tract Infection. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Acute Kidney Injury. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Diabetes Mellitus. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara; Smeeth, Liam; Tomlinson, Laurie A. code

Ebola Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017) Marks, Michael; Camacho, Anton; Kucharski, Adam; Funk, Sebastian; Edmunds, John; Piot, Peter description

R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. (2017) Marks, Michael; Mitja, Oriol; Fitzpatrick, Christopher; Asiedu, Kingsley; Solomon, Anthony W.; Mabey, David; Funk, Sebastian description

Supplementary material from "Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination". (2017) Masala, Giovanni; Lipsitch, M.; Bottomley, Christian; Flasche, Stefan

Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". (2017) Mccreesh, Nicky description

Spatial dynamics and control of a crop pathogen with mixed-mode transmission. (2017) Mcquaid, Christopher Finn; van den Bosch, Frank; Szyniszewska, Anna; Alicai, Titus; Pariyo, Anthony; Chikoti, Patrick Chiza; Gilligan, Christopher Aidan

POLYMOD social contact data. (2017) Mossong, Joël; Hens, Niel; Jit, Mark; Beutels, Philippe; Auranen, Kari; Mikolajczyk, Rafael; Massari, Marco; Salmaso, Stefania; Tomba, Gianpaolo Scalia; Wallinga, Jacco; Heijne, Janneke; Sadkowska-Todys, Malgorzata; Rosinska, Magdalena; Edmunds, W. John

Entebbe Mother and Baby Study - Data at one year. (2017) Nash, Stephen; Mentzer, Alexander J.; Lule, Swaib A.; Kizito, Dennison; Smits, Gaby; van der Klis, Fiona R.M.; Elliott, Alison

Dataset Files 1 and 2 for version 1 of "Linking health facility data from young adults aged 18-24 years to longitudinal demographic data: Experience from The Kilifi Health and Demographic Surveillance System". (2017) Nyundo, Christopher; Doyle, Aoife M.; Walumbe, David; Otiende, Mark; Kinuthia, Michael; Amadi, David; Jibendi, Boniface; Mochamah, George; Kihuha, Norbert; Williams, Thomas N.; Ross, David A.; Bauni, Evasius

Dataset 1: Genotyping results for 111 single nucleotide polymorphisms (SNPs) typed in 2486 Plasmodium falciparum samples collected from primary school children during a parasitological survey in western Kenya in 2009 and 2010. (2017) Omedo, Irene; Mogeni, Polycarp; Rockett, Kirk

Dataset 2: Single nucleotide polymorphisms (SNPs) and distance differences between Plasmodium falciparum parasite pairs sampled during a parasitological survey of primary school children in western Kenya. (2017) Omedo, Irene; Mogeni, Polycarp; Rockett, Kirk

Micro-epidemiological structuring of Plasmodium falciparum parasite populations in regions with varying transmission intensities in Africa. (2017) Omendo, Irene; Mogeni, Polycarp; Bousema, Teun; Rockett, Kirk A.; Amambua-Ngwa, Alfred; Oyier, Isabella; Stevenson, Jennifer C.; Baidjoe, Amrish; de Villiers, Etienne P.; Fegan, Greg; Ross, Amanda; Hubbart, Christina; Jeffreys, Anne; Williams, Thomas N.; Kwiatkowski, Dominic; Bejon, Philip

PREMIUM twelve-month follow-up trial: Clinical Outcomes and Cost-effectiveness dataset from the Healthy Activity Program (HAP) RCT. (2017) Patel, Vikram; Weobong, Benedict; Bhat, Bhargav; McDaid, David; Weiss, Helen folder_zip

Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. (2017) Pickering, Suzanne; Hue, Stephane; Kim, Eun-Young; Reddy, Susheel; Wolinsky, Steven M.; Neil, Stuart J. D.

Data for: "Estimates of the Burden of Group B Streptococcal Disease Worldwide for Pregnant Women, Stillbirths, and Children". (2017) Seale, Anna C; Bianchi-jassir, Fiorella; Russell, Neal; Kohli-lynch, Maya; Tann, Cally; Hall, Jenny; Madrid, Lola; Blencowe, Hannah; Cousens, Simon; Baker, Carol; Bartlett, Linda; Cutland, Clare; Gravett, Michael; Heath, Paul; Ip, Margaret; Le Doare, Kirsty; Madhi, Shabir; Rubens, Craig E; Saha, Samir; Schrag, Stephanie; Sobanjo-ter Meulen, Ajoke; Vekemans, Johan; Lawn, Joy E html

Economic evaluation of HIV-exposure Prophylaxis among men who have sex with men in England: Supplementary material. (2017) VanHoek, Albert

WOMAN Trial - Clinical and contextual factors surrounding the deaths of 483 women following post-partum haemorrhage in developing countries. (2017) WOMAN Trial Collaborators

Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. (2017) Watson, Conall H.; Coriakula, Jeremaia; Ngoc, Dung Tran Thi; Flasche, Stefan; Kucharski, Adam J.; Lau, Colleen L.; Thieu, Nga Tran Vu; le Polain de Waroux, Olivier; Rawalai, Kitione; Van, Tan Trinh; Taufa, Mere; Baker, Stephen; Nilles, Eric J.; Kama, Mike; Edmunds, W. John

MENISCUS SMC dataset. (2017) Weiss, Helen; Nakinyingi-Miiro, Jessica; Sembajjwe, Wilber; Gibson, Lorna folder_zip

Internet-accessed sexually transmitted infection (e-STI) testing and results service: A randomised, single-blind, controlled trial. (2017) Wilson, Emma; Free, Caroline; Morris, Tim P.; Syred, Jonathan; Ahamed, Irrfan; Menon-Johansson, Anatole S.; Palmer, Melissa J.; Barnard, Sharmani; Rezel, Emma; Baraitser, Paula