List of differentially expressed genes at all time points

Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S

, Sutherland, JS

, Winter, J, Kuivaniemi, H

, Walzl, G and Tromp, G

(2022). List of differentially expressed genes at all time points. [Dataset]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s002

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The statistical metrics presented for each comparison include: log2 fold change (log2FC), average log2 counts per million (logCPM), quasi-likelihood F-statistic (F), p-value (PValue) and false discovery rate (FDR). The non-TB time zero baseline group from the GC6 study were the control group for all comparisons prior to TB diagnosis (i.e., 24, 18, 12 and 6 months before diagnosis) while the Catalysis study healthy controls served as the baseline for the TB comparison.

Keywords

Tuberculosis diagnosis and management, Neutrophils, Tuberculosis, Catalysis, Platelets, Mycobacterium tuberculosis, Gene expression, Gene ontologies

Item Type	Dataset
Capture method	Compilation/Synthesis, Summary, Aggregation
Date	1 December 2022
Language(s) of written materials	English
Creator(s)	Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S, Sutherland, JS , Winter, J, Kuivaniemi, H, Walzl, G and Tromp, G
LSHTM Faculty/Department	MRC Unit The Gambia at LSHTM
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited	12 Dec 2022 10:40
Last Modified	12 Dec 2022 10:40
Publisher	PLOS ONE