Browse where type is Software and year is 2021
Number of items: 100.
A
Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). (2021)
Millington, James, Okpako, Oritsematosan, Herrick, Clare
Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. (2021)
Courtin, Emilie, Greener, Robert, Weiss, Jordan, Ware, Erin B., Dowd, Jennifer B., Rehkopf, David
Additional file 1 of A framework for handling missing accelerometer outcome data in trials. (2021)
Tackney, Mia S., Cook, Derek G., Stahl, Daniel, Ismail, Khalida, Williamson, Elizabeth, Carpenter, James
anavica/mcc_ccattr_NCC. (2021)
Vicedo-Cabrera, A. M., Gasparrini, Antonio, Royé, Dominic
Additional file 2 of Comparative diagnostic accuracy studies with an imperfect reference standard – a comparison of correction methods. (2021)
Umemneku Chikere, Chinyereugo M, Wilson, Kevin J, Allen, A Joy, Vale, Luke
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021)
Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
B
BugBunny/oRphanhood. (2021)
Timaeus, Ian
BayesSUR: Bayesian Seemingly Unrelated Regression. (2021)
Banterle, Marco, Zhao, Zhi, Bottolo, Leonardo, Richardson, Sylvia, Leoncio, Waldir, Lewin, Alexandra, Zucknick, Manuela, Zhao, Zhi
C
Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021)
Lindsey, Benjamin B., Villabona-Arenas, Christian Julian, Atkins, Katherine E., Campbell, Finlay
cmmid/coronavirus_immunity. (2021)
Waterlow, Naomi R., Van Leeuwen, Edwin, Davies, Nicholas, Flasche, Stefan, Eggo, Rosalind M.
Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021)
Aburto, José Manuel, Schöley, Jonas, Kashnitsky, Ilya, Knowles, Ian, Zhang, Luyin, Rahal, Charles, Missov, Trifon I, Dowd, Jennifer B, Mills, Melinda C, Kashyap, Ridhi
cmmid/covid_quar_test_import_risk. (2021)
Quilty, Billy
cmmid/uk_movement_communities_covid. (2021)
Gibbs, Hamish
cmmid/covidTestVac. (2021)
Pearson, Carl A. B.
cmmid/quar_test_contact_tracing. (2021)
Quilty, Billy
CEmimix ADO file. (2021)
Leurent, Baptiste, Cro, Suzie
Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. (2021)
Liu, Yang, Sandmann, Frank, Barnard, Rosanna C., Pearson, Carl A. B., LSHTM CMMID COVID-19 Working Group, Davies, Nicholas G., Jit, Mark
Code for: "Socioeconomic inequalities in the quality of primary care under Brazil’s national pay-for-performance programme: a longitudinal study of family health teams". (2021)
Powell-Jackson, Timothy, Kovacs, Roxanne, Borghi, Josephine
description
cmmid/SA2UK. (2021)
Pearson, Carl A. B., Russell, Timothy W., Kucharski, Adam J.
D
Dataset and R code for article "Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: a randomised, controlled study". (2021)
Fischer, Natalie, Darmstadt, Gary L, Shahunja, KM, Crowther, Jonathan M, Kendall, Lindsay, Gibson, Rachel A, Ahmed, Tahmeed, Relman, David A
Decision Modelling for Health Economic Evaluation R Code. (2021)
Williams, Jack, Naylor, Nichola, Briggs, Andrew
d-mayerova/Vaccine_confidence_Albania. (2021)
Mayerová, Daniela, Abbas, Kaja M.
DidDrog11/smoking_covid_bayes. (2021)
Simons, David
Datasets and code for "Mapping the plague through natural language processing". (2021)
Krauer, Fabienne, Schmid, Boris V.
Data and R code to accompany 'Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions'. (2021)
Lee, Sophie A.
Data for: "Estimating force of infection from serologic surveys with imperfect tests". (2021)
Alexander, Neal, Carabali, Mabel, Lim, Jacqueline K.
Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021)
Pavelka, Martin, van Zandvoort, Kevin, Abbott, Sam, Sherratt, Katharine, Majdan, Marek, Jarcuska, Pavel, Krajci, Marek, Flasche, Stefan, Funk, Sebastian
E
Extended Data: Iron supplementation of breastfed Gambian infants from 6 weeks to 6 months of age: Protocol for a randomised controlled trial. (2021)
Stelle, Isabella, Bah, Mamadou, Silverio, Sergio A., Verhoef, Hans, Comma, Ebrima, Prentice, Andrew M., Moore, Sophie E., Cerami, Carla
epiforecasts/forecast.vocs. (2021)
Abbott, Sam, Bracher, Johannes
epiforecasts/epinowcast. (2021)
Abbott, Sam, Monticone, Pietro
Eyedeet/Systematic_review. (2021)
Suffel, Anne Marie
erees/seasonalHCoV. (2021)
Rees, Eleanor
epiforecasts/covid19.nhs.data: Initial release. (2021)
Abbott, Sam, Meakin, Sophie
F
francescochecchi/mortality_small_area_estimation. (2021)
Checchi, Francesco, Testa, Adrienne, Gimma, Amy, Koum-Besson, Emilie, Warsame, Abdihamid
fsera/COVIDWeather. (2021)
Sera, Francesco, Abbott, Sam, Roye, Dominic
I
Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G., Jarvis, Christopher I., CMMID COVID-19 Working Group, Edmunds, W. John, Jewell, Nicholas P., Diaz-Ordaz, Karla, Keogh, Ruth H.
K
KamTan/MediationSimulation. (2021)
Tanner, Kamaryn T, Sharples, Linda D, Daniel, Rhian M, Keogh, Ruth H
katholt/srst2. (2021)
Inouye, Michael, Dashnow, Harriet, Pope, Bernie, Wick, Ryan, Holt, Kathryn E.
kieshaprem/nsum: Release of NSUM codes version 1.0. (2021)
Prem, Kiesha
kieshaprem/synthetic-contact-matrices. (2021)
Prem, Kiesha
KITmetricslab/covid19-forecast-hub-de. (2021)
Bracher, J., Wolffram, D., Deuschel, J., Görgen, K., Ketterer, J.L., Ullrich, A., Abbott, Sam, Barbarossa, M.V., Bertsimas, D., Bhatia, S., Bodych, M., Bosse, Nikos I., Burgard, J.P., Castro, L., Fairchild, G., Fuhrmann, J., Funk, Sebastian, Gogolewski, K., Gu, Q., Heyder, S., Hotz, T., Kheifetz, Y., Kirsten, H., Krueger, T., Krymova, E., Li, M.L., Meinke, J.H., Michaud, I.J., Niedzielewski, K., Ożański, T., Rakowski, F., Scholz, M., Soni, S., Srivastava, A., Zieliński, J., Zou, D., Gneiting, T., Schienle, M.
knowah/bssnper2. (2021)
Kessler, Noah J.
katholt/sonneityping: v20210201. (2021)
Holt, Kathryn E., Hawkey, Jane, Paranagama, Kalani
L
lshtm-tbmg/natcomms-m72sa: Nat Comms - code. (2021)
Harris, Rebecca C, Quaife, Matthew, Weerasuriya, Chathika Krishan, Gomez, Gabriela B, Sumner, Tom, Bozzani, Fiammetta, White, Richard G
liang-yu12/vd_covid. (2021)
Lin, Liang Yu
lshtm-vimc/dynamice. (2021)
Fu, Han, Abbas, Kaja M.
LSHTM-ORK/ODK_Biometrics. (2021)
Roberts, Chrissy, Stott, Callum
lwyakob/COVIDquarantine. (2021)
Yakob, Laith
LloydChapman/COVID_homeless_modelling. (2021)
Chapman, Lloyd A. C.
M
migariane/BayesVarImpComorbiCancer. (2021)
Rubio, Francisco Javier, Alvares, Danilo, Redondo-Sanchez, Daniel, Luque-fernandez, Miguel Angel
mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021)
Koltai, Mihaly
MatchThem: Matching and Weighting Multiply Imputed Datasets. (2021)
Pishgar, Farhad, Greifer, Noah, Leyrat, Clemence, Stuart, Elizabeth
mexhaz: Mixed Effect Excess Hazard Models. (2021)
Charvat, Hadrien, Belot, Aurélien
Methods and Code. (2021)
Castaneda-Guzman, Mariana, Mantilla-Saltos, Gabriel, Murray, Kris A., Settlage, Robert, Escobar, Luis E
mauzenbergs/polio_vdpv. (2021)
Auzenbergs, Megan, Fountain, Holly, Macklin, Grace, Lyons, Hil, O'reilly, Kathleen M.
O
o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021)
Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut
Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021)
Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark
ojal/KenyaSerology. (2021)
Brand, Samuel, Ojal, John
opensafely/covid-vs-noncovid-deaths-research. (2021)
Bhaskaran, Krishnan, Inglesby, Peter
R
Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021)
Abbott, Sam, Sherratt, Katharine, Funk, Sebastian
r-spatialecology/shar. (2021)
Hesselbarth, Maximilian, actions-user, Sciaini, Marco, Hereñú, Darío, Gruson, Hugo, Etherington, Thomas
rmjlros/COVID19_care_home_NPIs. (2021)
Rosello, Alicia, Abbott, Sam, Barnard, Rosanna C.
ropensci/drake. (2021)
Landau, Will, Landau, Will, Bond-Lamberty, Ben, Strasiotto, Matthew, McBain, Miles, Müller, Kirill, Mahr, TJ, Hughes, Ellis, Ross, Noam, Bell, Kendon, Ingerson, Sean, Aden-Buie, Garrick, Gomolka, Matthias, Knoblauch, Nicholas, Albers, Sam, brendanf, evalparse, Denney, Bill, Muir, Chris, Barrett, Malcolm, Krug, Rainer M, Kehayas, Vassilis, Schratz, Patrick, Zhao, Bruce, Hlynur, Gruson, Hugo, Jasper, Ooms, Jeroen, Walthert, Lorenz, Dray, Matt
Results of the Web-Delphi process to INAMI stakeholders (three rounds). (2021)
Oliveira, Mónica Duarte, Dimitrovová, Klára, Angelis, Aris, Kanavos, Panos, Bana e Costa, Carlos
Results of the Web-Delphi process to YLV stakeholders (three rounds). (2021)
Oliveira, Mónica Duarte, Dimitrovová, Klára, Angelis, Aris, Kanavos, Panos, Bana e Costa, Carlos
rachaelpung/serial_interval_covid_b.1.617.2. (2021)
Pung, Rachael
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian
rachaelmburke/hivhospital. (2021)
Burke, Rachael
R code for the paper "Probabilistic seasonal dengue forecasting in Vietnam: A modelling study using superensembles". (2021)
Colón-González, Felipe J., Soares Bastos, Leonardo, Hofmann, Barbara, Hopkin, Alison, Harpham, Quillon, Crocker, Tom, Amato, Rosanna, Ferrario, Iacopo, Moschini, Francesca, James, Samuel, Malde, Sajni, Ainscoe, Eleanor, Sinh Nam, Vu, Quang Tan, Dang, Duc Khoa, Nguyen, Harrison, Mark, Tsarouchi, Gina, Lumbroso, Darren, Brady, Oliver J., Lowe, Rachel
rachaelmburke/tbcovidblantyre. (2021)
Burke, Rachael
R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". (2021)
Quilty, Billy J, Hellewell, Joel, Clifford, Samuel, CMMID COVID-19 working group
description
S
SoCFourier. (2021)
Silver, Matt
description
STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021)
Strongman, Helen, Carreira, Helena
folder_zip
Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. (2021)
Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven
S1 File for "Multi-criteria suitability analysis for neglected and underutilised crop species in South Africa". (2021)
Mugiyo, Hillary, Chimonyo, Vimbayi G P, Sibanda, Mbulisi, Kunz, Richard, Nhamo, Luxon, Masemola, Cecelia R, Dalin, Caroline, Modi, Albert T, Mabhaudhi, Tafadzwa
supingling/glycaemic-control. (2021)
Ling, Suping
T
tomsumner/CORTIS_HR_CE. (2021)
Sumner, Tom
t-pollington/developments_tau_statistic. (2021)
Pollington, Timothy M, Tildesley, Michael J, Hollingsworth, T Déirdre, Chapman, Lloyd A. C.
TheYongjinChoi/NYS-COVID19-Disparities-Survey. (2021)
Fox, Ashley, Choi, Yongjin