Data Collection

Holt, KE (2023). Global Typhoid Genomics Consortium 2022 - Genome Assemblies. [Data Collection]. Monash University. https://doi.org/10.26180/21431883.v1

Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE (2022). Accession numbers and data for S. Typhi sequences used in this study. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s005

Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE (2022). Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s006

Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE (2022). Outgroups used for phylogenetic tree rooting. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s007

Wright, K, de Silva, K, Plain, KM, Purdie, AC, Blair, TA, Duggin, IG, Britton, WJ and Oehlers, SH (2021). Source data for graphs. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1009186.s008

Wright, K, de Silva, K, Plain, KM, Purdie, AC, Blair, TA, Duggin, IG, Britton, WJ and Oehlers, SH (2021). miR-206 target prediction results from TargetScan analysis. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1009186.s007

Kumar, N, Browne, HP, Viciani, E, Forster, SC, Clare, S, Harcourt, K, Stares, MD, Dougan, G, Fairley, DJ, Roberts, P, Pirmohamed, M, Clokie, MRJ, Jensen, MBF, Hargreaves, KR, Ip, M, Wieler, LH, Seyboldt, C, Norén, T, Riley, TV, Kuijper, EJ, Wren, BW and Lawley, TD (2019). Adaptation of host transmission cycle during Clostridium difficile speciation. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0478-8

Davies, MR, McIntyre, L, Mutreja, A, Lacey, JA, Lees, JA, Towers, RJ, Duchêne, S, Smeesters, PR, Frost, HR, Price, DJ, Holden, MT, Sophia, D, Giffard, PM, Worthing, KA, Seale, AC, Berkley, JA, Harris, SR, Rivera-Hernandez, T, Berking, O, Cork, AJ, Torres, RS, Lithgow, T, Strugnell, RA, Bergmann, R, Nitsche-Schmitz, P, Chhatwal, GS, Bentley, SD, Fraser, JD, Moreland, NJ, Carapetis, JR, Steer, AC, Parkhill, J, Saul, A, Williamson, DA, Currie, BJ, Tong, SY, Dougan, G and Walker, MJ (2019). Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0417-8

Sotillo, J, Pearson, MS, Becker, L, Mekonnen, GG, Amoah, AS, Dam, Gv, Corstjens, PL, Murray, J, Mduluza, T, Mutapi, F and Loukas, A (2019). In-depth proteomic characterization of Schistosoma haematobium: Towards the development of new tools for elimination. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007362

Mason, DS, Marks, M, Sokana, O, Solomon, AW, Mabey, DC, Romani, L, Kaldor, J, Steer, AC and Engelman, D (2016). The Prevalence of Scabies and Impetigo in the Solomon Islands: A Population-Based Survey. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004803.s002

Tsuboi, T, Grigg, M, Barber, BE, Marfurt, J, Imwong, M, William, T, Bird, E, Piera, KA, Aziz, A, Boonyuen, U, Drakeley, C, Cox, J, White, NJ, Cheng, Q, Yeo, TW, Auburn, S and Anstey, NM (2016). P. knowlesi DHFR sequence data. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149519.s001

Wang, X, Zheng, D, Arima, H, Sato, S, Gasparrini, A, Heeley, E, Delcourt, C, Lo, S, Huang, Y, Wang, J, Stapf, C, Robinson, T, Lavados, P, Chalmers, J and Anderson, CS (2016). Low Ambient Temperature and Intracerebral Hemorrhage: The INTERACT2 Study. S1 Table. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149040.s004

Phelan, J, Coll, F, Mcnerney, R, Ascher, DB, Pires, DEV, Furnham, N, Coeck, N, Hill-Cawthorne, GA, Nair, MB, Mallard, K, Ramsay, A, Campino, S, Hibberd, M, Pain, A, Rigouts, L and Clark, T (2015). Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/PRJEB11653

Brady, OJ (2013). Model of adult Aedes aegypti survival/mortality at different temperatures. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.865034.v1