LSHTM Organisational Structure (3766)

Faculty of Infectious and Tropical Diseases (1011)

Department of Infection Biology (181) Data Creators(s) Title Item Type No Grouping

A

Demographic information about patients from which EPEC in this study were derived and characteristics derived from genomes including sequence types, serovars, phylogenetic groups, virulence loci and antimicrobial resistance genes. (2025) Akinlabi, Olabisi C.; Dada, Rotimi A.; Olayinka, Ademola A.; Oginni-Falajiki, Ibukunoluwa O.; Bejide, Oyeniyi S.; Adewole, Pelumi D.; Thomson, Nicholas R.; Aboderin, Aaron O.; Okeke, Iruka N.

Source and properties of locally-derived and international EPEC genomes. (2025) Akinlabi, Olabisi C.; Dada, Rotimi A.; Olayinka, Ademola A.; Oginni-Falajiki, Ibukunoluwa O.; Bejide, Oyeniyi S.; Adewole, Pelumi D.; Thomson, Nicholas R.; Aboderin, Aaron O.; Okeke, Iruka N.

Optimization and Characterization of N-Acetamide Indoles as Antimalarials That Target PfATP4. (2025) Awalt, Jon Kyle; Ooi, Zi Kang; Ashton, Trent D.; Mansouri, Mahta; Calic, Petar P. S.; Zhou, Qingmiao; Vasanthan, Santhya; Lee, Serena; Loi, Katie; Jarman, Kate E.; Penington, Jocelyn S.; Qiu, Deyun; Zhang, Xinxin; Lehane, Adele M.; Mao, Emma Y.; Gancheva, Maria R.; Wilson, Danny W.; Giannangelo, Carlo; MacRaild, Christopher A.; Creek, Darren J.; Yeo, Tomas; Sheth, Tanaya; Fidock, David A.; Churchyard, Alisje; Baum, Jake; Famodimu, Mufuliat T.; Delves, Michael J.; Kristan, Mojca; Stewart, Lindsay; Sutherland, Colin J.; Coyle, Rachel; Jagoe, Hannah; Lee, Marcus C. S.; Chowdury, Mrittika; de Koning-Ward, Tania F.; Baud, Delphine; Brand, Stephen; Jackson, Paul F.; Cowman, Alan F.; Dans, Madeline G.; Sleebs, Brad E.

B

Limit of detection dataset for PCR assays. (2025) Braima, Kamil A.; Piera, Kim A.; Lubis, Inke N. D.; Noviyanti, Rintis; Rajahram, Giri S.; Kariodimedjo, Pinkan; Nainggolan, Irbah R. A.; Permatasari, Ranti; Trianty, Leily; Amalia, Ristya; Sakam, Sitti Saimah; Tan, Angelica F.; William, Timothy; Westaway, Jacob A. F.; Lee, PingChin; Daim, Sylvia; Surendra, Henry; Christy, Nathaniel; Letizia, Andrew G.; Peatey, Christopher L.; Moideen, Mohd Arshil; Barber, Bridget E.; Sutherland, Colin J.; Anstey, Nicholas M.; Grigg, Matthew J.

D

Additional file 3 of The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health. (2025) Dyson, Zoe A.; Cerdeira, Louise; Sharma, Vandana; Carey, Megan E.; Holt, Kathryn E.

H

Additional file 2 of A genome-wide One Health study of Klebsiella pneumoniae in Norway reveals overlapping populations but few recent transmission events across reservoirs. (2025) Hetland, Marit A. K.; Winkler, Mia A.; Kaspersen, Håkon P.; Håkonsholm, Fredrik; Bakksjø, Ragna-Johanne; Bernhoff, Eva; Delgado-Blas, Jose F.; Brisse, Sylvain; Correia, Annapaula; Fostervold, Aasmund; Lam, Margaret M. C.; Lunestad, Bjørn-Tore; Marathe, Nachiket P.; Raffelsberger, Niclas; Samuelsen, Ørjan; Sunde, Marianne; Sundsfjord, Arnfinn; Urdahl, Anne Margrete; Wick, Ryan R.; Löhr, Iren H.; Holt, Kathryn E.

klebgenomics/KlebNNSsero. (2025) Holt, Kathryn E.; Keegan, Shaun

I

typhoidgenomics/TyphoidGenomicsConsortiumMykrobe. (2025) Ingle, Danielle J.; Holt, Kathryn E.; Dyson, Zoe Anne

L

Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae. (2025) Lam, Margaret M. C.; Salisbury, Stephen M.; Treat, Logan P.; Wick, Ryan R.; Judd, Louise M.; Wyres, Kelly L; Brisse, Sylvain; Walker, Kimberly A; Miller, Virginia L; Holt, Kathryn E.

Convergent evolution of artemisinin and chloroquine resistance in Ethiopian Plasmodium falciparum parasites. (2025) Letebo, Alemayehu; Vanheer, Leen N.; Engdaw, Mengst; Alemayehu, Dawit Hailu; Deressa, Jimma Dinsa; Adnew, Bethlehem; Ayele, Abaysew; Keffale, Migbaru; Demisse, Mulugeta; Seyoum, Tamrayehu; Shiferaw, Meklit; Sime, Heven; Gebreegziabxier, Atsbeha; Shimelash, Amanuel; Tafa, Elias B.; Chali, Wakweya; Alemayehu, Lina; Kassa, Fikregabrail Aberra; Zeleke, Ayalew Jejaw; Hamza, Tajudin Abdurhaman; Tamirat, Abel Beliyu; Misganaw, Tadesse; Bogale, Alayu; Abriham, Zufan Yiheyis; Nasir, Yasin; Jebessa, Gutema; Ejigu, Legesse Alamerie; Yohannes, Metmiku; Kebede, Betelhem Akililu; Ayele, Matiwos Kidane; Abdo, Melat; Habtamu, Getinet; Gizat, Addisu; Phelan, Jody; Matlock, Bryce; Fidock, David A.; Campino, Susana; Assefa, Ashenafi; Koepfli, Cristian; Massebo, Fekadu; Tadesse, Fitsum G.

M

AndriaMousa/SP-resistance-protective-efficacy-code: v1.1. (2025) Mousa, Andria

N

Optimization and Characterization of the Antimalarial Activity of N-Aryl Acetamides that are Susceptible to Mutations in ROM8 and CSC1. (2025) Nguyen, William; Boulet, Coralie; Dans, Madeline G.; Loi, Katie; Jarman, Kate E.; Barnes, Claudia B. G.; Yeo, Tomas; Sheth, Tanaya; Mukherjee, Partha; Chakraborty, Arnish; Famodimu, Mufuliat; Delves, Michael J.; Pollard, Harry; Sutherland, Colin J.; Coyle, Rachael; Sevilleno, Nicole; Boonyalai, Nonlawat; Lee, Marcus C. S.; Rabie, Tayla; Birkholtz, Lyn-Marié; Baud, Delphine; Brand, Stephen; Chowdury, Mrittika; de Koning-Ward, Tania F.; Fidock, David A.; Gilson, Paul R.; Sleebs, Brad E.

Data supporting "Helminth-driven gut inflammation and microbial translocation are linked to altered vaccine responses in rural Uganda". (2025) Nkurunungi, Gyaviira; Nassuuna, Jacent description

P

Impact of commercial gut health interventions on caecal metagenome and broiler performance. (2025) Pangga, Gladys Maria; Star-Shirko, Banaz; Psifidi, Androniki; Xia, Dong; Corcionivoschi, Nicolae; Kelly, Carmel; Hughes, Callie; Lavery, Ursula; Richmond, Anne; Ijaz, Umer Zeeshan; Gundogdu, Ozan

jodyphelan/NTM-Profiler. (2025) Phelan, Jody

jodyphelan/pathogen-profiler. (2025) Phelan, Jody; van Heusden, Peter; Meuli, Michael; Cuddihy, Thom

S

Data for "Life cycle assessment of a clinical malaria trial in Mali reveals large environmental impacts of electricity consumption and international travel". (2025) Smit, Merel J.; Mahamar, Almahamoudou; Kooistra, Emma; Lanke, Kjerstin; Sanogo, Koualy; Okedy, Patrick Wilikpan; Yehia, Mohamed A.; Drakeley, Chris; Touw, Hugo; Stone, Will J. R.; Dicko, Alassane; Bousema, Teun; Stobernack, Tim

Additional file 2 of A new method for detecting mixed Mycobacterium tuberculosis infection and reconstructing constituent strains provides insights into transmission. (2025) Sobkowiak, Benjamin; Cudahy, Patrick; Chitwood, Melanie H.; Clark, Taane G.; Colijn, Caroline; Grandjean, Louis; Walter, Katharine S.; Crudu, Valeriu; Cohen, Ted

ShayAdams/randomisation_code_rcts. (2025) Soremekun, Seyi

ShayAdams/student_metrics_moodlelshtm. (2025) Soremekun, Seyi

AmpliconTyper. (2025) Spadar, Anton; Mahindroo, Jaspreet; Troman, Catherine; Owusu, Michael; Adu-Sarkodie, Yaw; Abraham, Dilip; Blossom Benny; Govindan, Karthikeyan; Mohan, Venkata Raghava; Dyson, Zoe Anne; Grassly, Nicholas; Holt, Kathryn E.

Investigating microbial population structure and function in the chicken caeca and large intestine over time using metagenomics. (2025) Star-Shirko, Banaz; Pangga, Gladys Maria; McKenna, Aaron; Corcionivoschi, Nicolae; Richmond, Anne; Ijaz, Umer Zeeshan; Gundogdu, Ozan

W

klebgenomics/Kaptive. (2025) Wick, Ryan R.; Stanton, Thomas; Wyres, Kelly L; Holt, Kathryn E.