LSHTM Organisational Structure (3744)

Faculty of Infectious and Tropical Diseases (1003)

Department of Infection Biology (175) Data Creators(s) Title Item Type No Grouping

Dataset

Additional file 1 of A snapshot of the prevalence of dihydropteroate synthase-431V mutation and other sulfadoxine-pyrimethamine resistance markers in Plasmodium falciparum isolates in Nigeria. (2024) Adegbola, Adebanjo J., Ijarotimi, Omotade A., Ubom, Akaninyene E., Adesoji, Bukola A., Babalola, Olajide E., Hocke, Emma F., Hansson, Helle, Mousa, Andria, Bolaji, Oluseye O., Alifrangis, Michael, Roper, Cally

nextstrain/nextclade. (2024) Aksamentov, Ivan, Neher, Richard, Roemer, Cornelius, mt-gitlocalize, Parker, Anna Anya, Lin, Victor, Sibley, Thomas, Negrón, Daniel Antonio, Nextstrain bot, Anderson, John SJ, Snyk bot, Hodcroft, Emma, Actat, Rubinsteyn, Alex, Grüning, Björn, Tegomoh, Bryan, Chen, Chaoran, Bottoms, Christopher, Maguire, Finlay, Huddleston, John, Lee, Jover, Sanderson, Theo, Harkins, Elias

Dataset of 16S rRNA sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan. (2024) Ameer, Aqsa, Saleem, Farrukh, Keating, Ciara, Gundogdu, Ozan, Javed, Sundus, Ijaz, Umer Zeeshan

Additional file 1 of Effect of spatiotemporal variables on abundance, biting activity and parity of Nyssorhynchus darlingi (Diptera: Culicidae) in peri-Iquitos, Peru. (2024) Bickersmith, Sara A., Saavedra, Marlon P., Prussing, Catharine, Lange, Rachel E., Morales, Juliana A., Alava, Freddy, Vinetz, Joseph M., Gamboa, Dionicia, Moreno Leirana, Marta, Conn, Jan E.

The impact of weekly fever-screening and treatment and monthly RDT testing and treatment on the infectious reservoir of malaria in Burkina Faso: results from a cluster-randomised trial. (2024) Bousema, Teun, Collins, Katharine, Ouedraogo, Alphonse, Guelbeogo, Wamdaogo Moussa, Soulama, Issiaka, Ouattara, Maurice, Sobie, Salif, Ouedraogo, Nicholas, Coulibaly, Aboubacar, Nombre, Apollinaire, Lanke, Kjerstin, Ramjith, Jordache, Awandu, Shehu, Serme, Samuel, Henry, Noelie, Stone, Will J. R., Ouedraogo, Issa, Holden, Tobias, Sirima, Sodiomon, Bradley, John, Soremekun, Seyi, Selvaraj, Prashanth, Gerardin, Jaline, Drakeley, Chris, Tiono, Alfred

amrnet/amrnet: AMRnet-v1.0. (2024) Cerdeira, Louise, Sharma, Vandana, Maranga, Mary, Carey, Megan, Dyson, Zoe Anne, Holt, Kathryn E.

Supplemental Data for "A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex.". (2024) Cooper, Helena B., Vezina, Ben, Hawkey, Jane, Passet, Virginie, López-Fernández, Sebastián, Monk, Jonathan M., Brisse, Sylvain, Holt, Kathryn E., Wyres, Kelly L.

Dataset: NECTAR1 Randomized Controlled Trial. (2024) Drakeley, Chris, Dicko, Alassane, Bousema, Teun

Dataset: NECTAR2 Randomized Controlled Trial. (2024) Drakeley, Chris, Dicko, Alassane, Bousema, Teun

Dataset: NECTAR3 Randomized Controlled Trial. (2024) Drakeley, Chris, Dicko, Alassane, Bousema, Teun

Dataset: NECTAR4 Randomized Controlled Trial. (2024) Drakeley, Chris, Dicko, Alassane, Bousema, Teun

Data repository for "Brazil towards malaria elimination: A time-series analysis of imported cases from 2007 to 2022". (2024) Garcia, Klauss Kleydmann Sabino, Laporta, Gabriel Z., Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, Moresco, Gilberto Gilmar, Drakeley, Chris, Costa, Anielle de Pina, Siqueira, André M.

Is Brazil reaching malaria elimination? A time series analysis of malaria cases from 2011 to 2023. (2024) Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Abrahão, Amanda Amaral, Marchesini, Paola Barbosa, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M.

Additional file 2 of Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations. (2024) Heinz, Eva, Pearse, Oliver, Zuza, Allan, Bilima, Sithembile, Msefula, Chisomo, Musicha, Patrick, Siyabu, Patriciah, Tewesa, Edith, Graf, Fabrice E., Lester, Rebecca, Lissauer, Samantha, Cornick, Jennifer, Lewis, Joseph M., Kawaza, Kondwani, Thomson, Nicholas R., Feasey, Nicholas A.

interpretAMR/AMRrules. (2024) Holt, Kathryn E., Hawkey, Jane

HuR (ELAVL1) regulates the CCHFV minigenome and HAZV replication by associating with viral genomic RNA. (2024) Ikegawa, Moe, Kano, Norisuke, Ori, Daisuke, Fukuta, Mizuki, Hirano, Minato, Hewson, Roger, Yoshii, Kentaro, Kawai, Taro, Kawasaki, Takumi

shaunkeegan/coinfection_spatial_scaling_paper. (2024) Keegan, Shaun, Fenton, Andy

The impact of within-host coinfection interactions on between-host parasite transmission dynamics varies with spatial scale. (2024) Keegan, Shaun, Pedersen, Amy, Fenton, Andrew

Kinetic properties of the recombinantly expressed PfPKGWT, PfPKGY214, PfPKGSTmut, PfPKGT695A, PfPKGT695E and CD analysis of PfPKGWT and PfPKGSTmut. (2024) Koussis, Konstantinos, Haase, Silvia, Withers-Martinez, Chrislaine, Flynn, Helen R, Kunzelmann, Simone, Christodoulou, Evangelos, Ibrahim, Fairouz, Skehel, Mark, Baker, David A, Blackman, Michael J

Peak areas from the T695 phosphorylation. (2024) Koussis, Konstantinos, Haase, Silvia, Withers-Martinez, Chrislaine, Flynn, Helen R, Kunzelmann, Simone, Christodoulou, Evangelos, Ibrahim, Fairouz, Skehel, Mark, Baker, David A, Blackman, Michael J

Phosphoproteome analyses of PKG_GFP, PKG_T695A and PKG_T695E in P. falciparum schizonts. (2024) Koussis, Konstantinos, Haase, Silvia, Withers-Martinez, Chrislaine, Flynn, Helen R, Kunzelmann, Simone, Christodoulou, Evangelos, Ibrahim, Fairouz, Skehel, Mark, Baker, David A, Blackman, Michael J

Proteins identified from pull down experiments of WT, PKG_GFP, PKG_T695A and PKG_T695E. (2024) Koussis, Konstantinos, Haase, Silvia, Withers-Martinez, Chrislaine, Flynn, Helen R, Kunzelmann, Simone, Christodoulou, Evangelos, Ibrahim, Fairouz, Skehel, Mark, Baker, David A, Blackman, Michael J

S1 Raw Data for: "Activation loop phosphorylation and cGMP saturation of PKG regulate egress of malaria parasites". (2024) Koussis, Konstantinos, Haase, Silvia, Withers-Martinez, Chrislaine, Flynn, Helen R, Kunzelmann, Simone, Christodoulou, Evangelos, Ibrahim, Fairouz, Skehel, Mark, Baker, David A, Blackman, Michael J

Source files for 3D printed hamster anaesthesia delivery nosecone. (2024) Langston, Harry, Fortes Francisco, Amanda, Doidge, Ciaran, Roberts, Chrissy H., Khan, Archie A., Jayawardhana, Shiromani, Taylor, Martin C., Kelly, John M., Lewis, Michael D.

Source data for: "Dynamics of Trypanosoma cruzi infection in hamsters and novel association with progressive motor dysfunction". (2024) Langston, Harry, Fortes Francisco, Amanda, Doidge, Ciaran, Roberts, Chrissy H, Khan, Archie A, Jayawardhana, Shiromani, Taylor, Martin C, Kelly, John M, Lewis, Michael D

Impact of commercial gut health interventions on caecal metagenome and broiler performance. (2024) London School of Hygiene & Tropical Medicine

WGS of Ethiopian Anopheles Stephensi. (2024) London School of Hygiene & Tropical Medicine

Puerto Rico Insecticide Resistance Amplicons. (2024) London School of Hygiene and Tropical Medicine

High-content high-resolution microscopy and deep learning assisted analysis reveals host and bacterial heterogeneity during Shigella infection. (2024) López-Jiménez, Ana Teresa, Brokatzky, Dominik, Pillay, Kamla, Williams, Tyrese, Özbaykal Güler, Gizem, Mostowy, Serge

ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. (2024) López-jiménez, Ana Teresa

sophiemoss/anopheles_popgen. (2024) Moss, Sophie

AndriaMousa/chemoprevention-trial-code. (2024) Mousa, Andria

Acanthamoeba castellanii as a model for unveiling Campylobacter jejuni host-pathogen dynamics. (2024) Nasher, Fauzy, Lehri, Burhan

Delta shape data. (2024) Phelan, Jody

Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan. (2024) Saleem, Farrukh, Ameer, Aqsa, Keating, Ciara, Gundogdu, Ozan, Javed, Sundus, Ijaz, Umer Zeeshan

theosanderson/taxonium. (2024) Sanderson, Theo, Kramer, Alex, Goater, Richard, Hinrichs, Angie, L'YI, Sehi, Roemer, Cornelius, Kwon, Sung, Vargha, Koorous

theosanderson/hospitalmedicines. (2024) Sanderson, Theodore

TnSEQ analysis measuring fitness costs of insertions in the M. bovis AF2122/97 genome during survival in extra-pulmonary lymph nodes. (2024) Scurlock, Matthew, Stiens, Jennifer, Passmore, Ian J., Nobeli, Irene, Kendall, Sharon

Additional file 3 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton, Phelan, Jody E., Clark, Taane G., Campino, Susana

Additional file 1 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton, Phelan, Jody, Clark, Taane G., Campino, Susana

TnSEQ analysis measuring fitness costs of insertions in the M. bovis AF2122/97 genome under oxidative stress. (2024) Stiens, Jennifer, Passmore, Ian J., Nobeli, Irene, Kendall, Sharon

Visceral leishmaniasis in the hills of western Nepal- a transmission. (2024) Uranw, Surendra, Bhattarai, Narayan Raj, Cloots, Kristien, Roy, Lalita, Rai, Keshav, Kiran, Usha, Pyakurel, Uttam Raj, Lal, Bibek Kumar, Burza, Sakib, Rijal, Suman, Karki, Prahlad, Khanal, Basudha, Hasker, Epco

LSHTMPathogenSeqLab/malaria-hub. (2024) juuzia, Ngwana-Joseph, Gabrielle