Adegbola, AJ, Ijarotimi, OA, Ubom, AE, Adesoji, BA, Babalola, OE, Hocke, EF, Hansson, H, Mousa, A, Bolaji, OO, Alifrangis, M and Roper, C (2024). Additional file 1 of A snapshot of the prevalence of dihydropteroate synthase-431V mutation and other sulfadoxine-pyrimethamine resistance markers in Plasmodium falciparum isolates in Nigeria. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26572123.v1

Aksamentov, I, Neher, R, Roemer, C, mt-gitlocalize, Parker, AA, Lin, V, Sibley, T, Negrón, DA, Nextstrain bot, Anderson, JS, Snyk bot, Hodcroft, E, Actat, Rubinsteyn, A, Grüning, B, Tegomoh, B, Chen, C, Bottoms, C, Maguire, F, Huddleston, J, Lee, J, Sanderson, T and Harkins, E (2024). nextstrain/nextclade. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5731501

Ameer, A, Saleem, F, Keating, C, Gundogdu, O, Javed, S and Ijaz, UZ (2024). Dataset of 16S rRNA sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.25795078.v1

Bickersmith, SA, Saavedra, MP, Prussing, C, Lange, RE, Morales, JA, Alava, F, Vinetz, JM, Gamboa, D, Moreno Leirana, M and Conn, JE (2024). Additional file 1 of Effect of spatiotemporal variables on abundance, biting activity and parity of Nyssorhynchus darlingi (Diptera: Culicidae) in peri-Iquitos, Peru. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26709188.v1

Bousema, T, Collins, K, Ouedraogo, A, Guelbeogo, WM, Soulama, I, Ouattara, M, Sobie, S, Ouedraogo, N, Coulibaly, A, Nombre, A, Lanke, K, Ramjith, J, Awandu, S, Serme, S, Henry, N, Stone, WJR, Ouedraogo, I, Holden, T, Sirima, S, Bradley, J, Soremekun, S, Selvaraj, P, Gerardin, J, Drakeley, C and Tiono, A (2024). The impact of weekly fever-screening and treatment and monthly RDT testing and treatment on the infectious reservoir of malaria in Burkina Faso: results from a cluster-randomised trial. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.fxpnvx117

Cerdeira, L, Sharma, V, Maranga, M, Carey, M, Dyson, ZA and Holt, KE (2024). amrnet/amrnet: AMRnet-v1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10810218

Cooper, HB, Vezina, B, Hawkey, J, Passet, V, López-Fernández, S, Monk, JM, Brisse, S, Holt, KE and Wyres, KL (2024). Supplemental Data for "A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex.". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24871914.v1

Drakeley, C, Dicko, A and Bousema, T (2024). Dataset: NECTAR1 Randomized Controlled Trial. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_7b47eb7469/new

Drakeley, C, Dicko, A and Bousema, T (2024). Dataset: NECTAR2 Randomized Controlled Trial. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_03d6476c6d/new

Drakeley, C, Dicko, A and Bousema, T (2024). Dataset: NECTAR3 Randomized Controlled Trial. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_d00683a135/new

Drakeley, C, Dicko, A and Bousema, T (2024). Dataset: NECTAR4 Randomized Controlled Trial. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_861ea66681/new

Heinz, E, Pearse, O, Zuza, A, Bilima, S, Msefula, C, Musicha, P, Siyabu, P, Tewesa, E, Graf, FE, Lester, R, Lissauer, S, Cornick, J, Lewis, JM, Kawaza, K, Thomson, NR and Feasey, NA (2024). Additional file 2 of Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26716636.v1

Holt, KE and Hawkey, J (2024). interpretAMR/AMRrules. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.12724318

Ikegawa, M, Kano, N, Ori, D, Fukuta, M, Hirano, M, Hewson, R, Yoshii, K, Kawai, T and Kawasaki, T (2024). HuR (ELAVL1) regulates the CCHFV minigenome and HAZV replication by associating with viral genomic RNA. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012553.s001

Keegan, S and Fenton, A (2024). shaunkeegan/coinfection_spatial_scaling_paper. [Data Collection]. Github. https://github.com/shaunkeegan/coinfection_spatial_scaling_paper

Keegan, S, Pedersen, A and Fenton, A (2024). The impact of within-host coinfection interactions on between-host parasite transmission dynamics varies with spatial scale. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.tdz08kq68

Koussis, K, Haase, S, Withers-Martinez, C, Flynn, HR, Kunzelmann, S, Christodoulou, E, Ibrahim, F, Skehel, M, Baker, DA and Blackman, MJ (2024). Kinetic properties of the recombinantly expressed PfPKGWT, PfPKGY214, PfPKGSTmut, PfPKGT695A, PfPKGT695E and CD analysis of PfPKGWT and PfPKGSTmut. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1012360.s018

Koussis, K, Haase, S, Withers-Martinez, C, Flynn, HR, Kunzelmann, S, Christodoulou, E, Ibrahim, F, Skehel, M, Baker, DA and Blackman, MJ (2024). Peak areas from the T695 phosphorylation. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1012360.s020

Koussis, K, Haase, S, Withers-Martinez, C, Flynn, HR, Kunzelmann, S, Christodoulou, E, Ibrahim, F, Skehel, M, Baker, DA and Blackman, MJ (2024). Phosphoproteome analyses of PKG_GFP, PKG_T695A and PKG_T695E in P. falciparum schizonts. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1012360.s021

Koussis, K, Haase, S, Withers-Martinez, C, Flynn, HR, Kunzelmann, S, Christodoulou, E, Ibrahim, F, Skehel, M, Baker, DA and Blackman, MJ (2024). Proteins identified from pull down experiments of WT, PKG_GFP, PKG_T695A and PKG_T695E. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1012360.s019

Koussis, K, Haase, S, Withers-Martinez, C, Flynn, HR, Kunzelmann, S, Christodoulou, E, Ibrahim, F, Skehel, M, Baker, DA and Blackman, MJ (2024). S1 Raw Data for: "Activation loop phosphorylation and cGMP saturation of PKG regulate egress of malaria parasites". [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1012360.s023

Langston, H, Fortes Francisco, A, Doidge, C, Roberts, CH, Khan, AA, Jayawardhana, S, Taylor, MC, Kelly, JM and Lewis, MD (2024). Source files for 3D printed hamster anaesthesia delivery nosecone. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012278.s002

Langston, H, Fortes Francisco, A, Doidge, C, Roberts, CH, Khan, AA, Jayawardhana, S, Taylor, MC, Kelly, JM and Lewis, MD (2024). Source data for: "Dynamics of Trypanosoma cruzi infection in hamsters and novel association with progressive motor dysfunction". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012278.s003

López-Jiménez, AT, Brokatzky, D, Pillay, K, Williams, T, Özbaykal Güler, G and Mostowy, S (2024). High-content high-resolution microscopy and deep learning assisted analysis reveals host and bacterial heterogeneity during Shigella infection. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10766626

López-jiménez, AT (2024). ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. [Data Collection]. Github. https://github.com/ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection

Moss, S (2024). sophiemoss/anopheles_popgen. [Data Collection]. Github. https://github.com/sophiemoss/anopheles_popgen

Mousa, A (2024). AndriaMousa/chemoprevention-trial-code. [Data Collection]. GitHub. https://github.com/AndriaMousa/chemoprevention-trial-code

Phelan, J (2024). Delta shape data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.25713279.v1

Sanderson, T, Kramer, A, Goater, R, Hinrichs, A, L'YI, S, Roemer, C, Kwon, S and Vargha, K (2024). theosanderson/taxonium. [Data Collection]. Github. https://github.com/theosanderson/taxonium

Sanderson, T (2024). theosanderson/hospitalmedicines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10493050

Spadar, A, Phelan, JE, Clark, TG and Campino, S (2024). Additional file 3 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26608770.v1

Spadar, A, Phelan, J, Clark, TG and Campino, S (2024). Additional file 1 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26608764.v1

Uranw, S, Bhattarai, NR, Cloots, K, Roy, L, Rai, K, Kiran, U, Pyakurel, UR, Lal, BK, Burza, S, Rijal, S, Karki, P, Khanal, B and Hasker, E (2024). Visceral leishmaniasis in the hills of western Nepal- a transmission. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0289578.s004