LSHTM Organisational Structure (3746)

Faculty of Infectious and Tropical Diseases (1003)

Department of Infection Biology (175) Data Creators(s) Title Item Type No Grouping

Additional file 1 of A snapshot of the prevalence of dihydropteroate synthase-431V mutation and other sulfadoxine-pyrimethamine resistance markers in Plasmodium falciparum isolates in Nigeria. (2024) Adegbola, Adebanjo J.; Ijarotimi, Omotade A.; Ubom, Akaninyene E.; Adesoji, Bukola A.; Babalola, Olajide E.; Hocke, Emma F.; Hansson, Helle; Mousa, Andria; Bolaji, Oluseye O.; Alifrangis, Michael; Roper, Cally

nextstrain/nextclade. (2024) Aksamentov, Ivan; Neher, Richard; Roemer, Cornelius; mt-gitlocalize; Parker, Anna Anya; Lin, Victor; Sibley, Thomas; Negrón, Daniel Antonio; Nextstrain bot; Anderson, John SJ; Snyk bot; Hodcroft, Emma; Actat; Rubinsteyn, Alex; Grüning, Björn; Tegomoh, Bryan; Chen, Chaoran; Bottoms, Christopher; Maguire, Finlay; Huddleston, John; Lee, Jover; Sanderson, Theo; Harkins, Elias

Dataset of 16S rRNA sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan. (2024) Ameer, Aqsa; Saleem, Farrukh; Keating, Ciara; Gundogdu, Ozan; Javed, Sundus; Ijaz, Umer Zeeshan

Additional file 1 of Effect of spatiotemporal variables on abundance, biting activity and parity of Nyssorhynchus darlingi (Diptera: Culicidae) in peri-Iquitos, Peru. (2024) Bickersmith, Sara A.; Saavedra, Marlon P.; Prussing, Catharine; Lange, Rachel E.; Morales, Juliana A.; Alava, Freddy; Vinetz, Joseph M.; Gamboa, Dionicia; Moreno Leirana, Marta; Conn, Jan E.

The impact of weekly fever-screening and treatment and monthly RDT testing and treatment on the infectious reservoir of malaria in Burkina Faso: results from a cluster-randomised trial. (2024) Bousema, Teun; Collins, Katharine; Ouedraogo, Alphonse; Guelbeogo, Wamdaogo Moussa; Soulama, Issiaka; Ouattara, Maurice; Sobie, Salif; Ouedraogo, Nicholas; Coulibaly, Aboubacar; Nombre, Apollinaire; Lanke, Kjerstin; Ramjith, Jordache; Awandu, Shehu; Serme, Samuel; Henry, Noelie; Stone, Will J. R.; Ouedraogo, Issa; Holden, Tobias; Sirima, Sodiomon; Bradley, John; Soremekun, Seyi; Selvaraj, Prashanth; Gerardin, Jaline; Drakeley, Chris; Tiono, Alfred

amrnet/amrnet: AMRnet-v1.0. (2024) Cerdeira, Louise; Sharma, Vandana; Maranga, Mary; Carey, Megan; Dyson, Zoe Anne; Holt, Kathryn E.

Supplemental Data for "A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex.". (2024) Cooper, Helena B.; Vezina, Ben; Hawkey, Jane; Passet, Virginie; López-Fernández, Sebastián; Monk, Jonathan M.; Brisse, Sylvain; Holt, Kathryn E.; Wyres, Kelly L.

Dataset: NECTAR1 Randomized Controlled Trial. (2024) Drakeley, Chris; Dicko, Alassane; Bousema, Teun

Dataset: NECTAR2 Randomized Controlled Trial. (2024) Drakeley, Chris; Dicko, Alassane; Bousema, Teun

Dataset: NECTAR3 Randomized Controlled Trial. (2024) Drakeley, Chris; Dicko, Alassane; Bousema, Teun

Dataset: NECTAR4 Randomized Controlled Trial. (2024) Drakeley, Chris; Dicko, Alassane; Bousema, Teun

Data repository for "Brazil towards malaria elimination: A time-series analysis of imported cases from 2007 to 2022". (2024) Garcia, Klauss Kleydmann Sabino; Laporta, Gabriel Z.; Soremekun, Seyi; Bottomley, Christian; Abrahão, Amanda Amaral; Moresco, Gilberto Gilmar; Drakeley, Chris; Costa, Anielle de Pina; Siqueira, André M.

Is Brazil reaching malaria elimination? A time series analysis of malaria cases from 2011 to 2023. (2024) Garcia, Klauss Kleydmann Sabino; Soremekun, Seyi; Abrahão, Amanda Amaral; Marchesini, Paola Barbosa; Drakeley, Chris; Ramalho, Walter Massa; Siqueira, André M.

Additional file 2 of Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations. (2024) Heinz, Eva; Pearse, Oliver; Zuza, Allan; Bilima, Sithembile; Msefula, Chisomo; Musicha, Patrick; Siyabu, Patriciah; Tewesa, Edith; Graf, Fabrice E.; Lester, Rebecca; Lissauer, Samantha; Cornick, Jennifer; Lewis, Joseph M.; Kawaza, Kondwani; Thomson, Nicholas R.; Feasey, Nicholas A.

interpretAMR/AMRrules. (2024) Holt, Kathryn E.; Hawkey, Jane

HuR (ELAVL1) regulates the CCHFV minigenome and HAZV replication by associating with viral genomic RNA. (2024) Ikegawa, Moe; Kano, Norisuke; Ori, Daisuke; Fukuta, Mizuki; Hirano, Minato; Hewson, Roger; Yoshii, Kentaro; Kawai, Taro; Kawasaki, Takumi

shaunkeegan/coinfection_spatial_scaling_paper. (2024) Keegan, Shaun; Fenton, Andy

The impact of within-host coinfection interactions on between-host parasite transmission dynamics varies with spatial scale. (2024) Keegan, Shaun; Pedersen, Amy; Fenton, Andrew

Kinetic properties of the recombinantly expressed PfPKGWT, PfPKGY214, PfPKGSTmut, PfPKGT695A, PfPKGT695E and CD analysis of PfPKGWT and PfPKGSTmut. (2024) Koussis, Konstantinos; Haase, Silvia; Withers-Martinez, Chrislaine; Flynn, Helen R; Kunzelmann, Simone; Christodoulou, Evangelos; Ibrahim, Fairouz; Skehel, Mark; Baker, David A; Blackman, Michael J

Peak areas from the T695 phosphorylation. (2024) Koussis, Konstantinos; Haase, Silvia; Withers-Martinez, Chrislaine; Flynn, Helen R; Kunzelmann, Simone; Christodoulou, Evangelos; Ibrahim, Fairouz; Skehel, Mark; Baker, David A; Blackman, Michael J

Phosphoproteome analyses of PKG_GFP, PKG_T695A and PKG_T695E in P. falciparum schizonts. (2024) Koussis, Konstantinos; Haase, Silvia; Withers-Martinez, Chrislaine; Flynn, Helen R; Kunzelmann, Simone; Christodoulou, Evangelos; Ibrahim, Fairouz; Skehel, Mark; Baker, David A; Blackman, Michael J

Proteins identified from pull down experiments of WT, PKG_GFP, PKG_T695A and PKG_T695E. (2024) Koussis, Konstantinos; Haase, Silvia; Withers-Martinez, Chrislaine; Flynn, Helen R; Kunzelmann, Simone; Christodoulou, Evangelos; Ibrahim, Fairouz; Skehel, Mark; Baker, David A; Blackman, Michael J

S1 Raw Data for: "Activation loop phosphorylation and cGMP saturation of PKG regulate egress of malaria parasites". (2024) Koussis, Konstantinos; Haase, Silvia; Withers-Martinez, Chrislaine; Flynn, Helen R; Kunzelmann, Simone; Christodoulou, Evangelos; Ibrahim, Fairouz; Skehel, Mark; Baker, David A; Blackman, Michael J

Source files for 3D printed hamster anaesthesia delivery nosecone. (2024) Langston, Harry; Fortes Francisco, Amanda; Doidge, Ciaran; Roberts, Chrissy H.; Khan, Archie A.; Jayawardhana, Shiromani; Taylor, Martin C.; Kelly, John M.; Lewis, Michael D.

Source data for: "Dynamics of Trypanosoma cruzi infection in hamsters and novel association with progressive motor dysfunction". (2024) Langston, Harry; Fortes Francisco, Amanda; Doidge, Ciaran; Roberts, Chrissy H; Khan, Archie A; Jayawardhana, Shiromani; Taylor, Martin C; Kelly, John M; Lewis, Michael D

Impact of commercial gut health interventions on caecal metagenome and broiler performance. (2024) London School of Hygiene & Tropical Medicine

WGS of Ethiopian Anopheles Stephensi. (2024) London School of Hygiene & Tropical Medicine

Puerto Rico Insecticide Resistance Amplicons. (2024) London School of Hygiene and Tropical Medicine

High-content high-resolution microscopy and deep learning assisted analysis reveals host and bacterial heterogeneity during Shigella infection. (2024) López-Jiménez, Ana Teresa; Brokatzky, Dominik; Pillay, Kamla; Williams, Tyrese; Özbaykal Güler, Gizem; Mostowy, Serge

ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. (2024) López-jiménez, Ana Teresa

sophiemoss/anopheles_popgen. (2024) Moss, Sophie

AndriaMousa/chemoprevention-trial-code. (2024) Mousa, Andria

Acanthamoeba castellanii as a model for unveiling Campylobacter jejuni host-pathogen dynamics. (2024) Nasher, Fauzy; Lehri, Burhan

Delta shape data. (2024) Phelan, Jody

Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan. (2024) Saleem, Farrukh; Ameer, Aqsa; Keating, Ciara; Gundogdu, Ozan; Javed, Sundus; Ijaz, Umer Zeeshan

theosanderson/taxonium. (2024) Sanderson, Theo; Kramer, Alex; Goater, Richard; Hinrichs, Angie; L'YI, Sehi; Roemer, Cornelius; Kwon, Sung; Vargha, Koorous

theosanderson/hospitalmedicines. (2024) Sanderson, Theodore

TnSEQ analysis measuring fitness costs of insertions in the M. bovis AF2122/97 genome during survival in extra-pulmonary lymph nodes. (2024) Scurlock, Matthew; Stiens, Jennifer; Passmore, Ian J.; Nobeli, Irene; Kendall, Sharon

Additional file 3 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton; Phelan, Jody E.; Clark, Taane G.; Campino, Susana

Additional file 1 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton; Phelan, Jody; Clark, Taane G.; Campino, Susana

TnSEQ analysis measuring fitness costs of insertions in the M. bovis AF2122/97 genome under oxidative stress. (2024) Stiens, Jennifer; Passmore, Ian J.; Nobeli, Irene; Kendall, Sharon

Visceral leishmaniasis in the hills of western Nepal- a transmission. (2024) Uranw, Surendra; Bhattarai, Narayan Raj; Cloots, Kristien; Roy, Lalita; Rai, Keshav; Kiran, Usha; Pyakurel, Uttam Raj; Lal, Bibek Kumar; Burza, Sakib; Rijal, Suman; Karki, Prahlad; Khanal, Basudha; Hasker, Epco

LSHTMPathogenSeqLab/malaria-hub. (2024) juuzia; Ngwana-Joseph, Gabrielle