KEGG pathway enrichment analysis results for significantly differentially expressed genes at all time points
Meier, S; Seddon, JA; Maasdorp, E; Kleynhans, L; du Plessis, N; Loxton, AG; Malherbe, ST; Zak, DE; Thompson, E; Duffy, FJ; Kaufmann, SHE; Ottenhoff, THM; Scriba, TJ; Suliman, S
; Sutherland, JS
; Winter, J; Kuivaniemi, H
; Walzl, G and Tromp, G
(2022).
KEGG pathway enrichment analysis results for significantly differentially expressed genes at all time points.
[Dataset].
PLOS ONE.
https://doi.org/10.1371/journal.pone.0278295.s004
The analysis was performed using the kegga function from the edgeR R Bioconductor package. The statistical metrics presented for each pathway include: the total number of genes annotated to the pathway (Total annotated), the number of genes that were significantly up (N Up) or down (N Down) -regulated, the % of the total annotated that were up (% Up) or down (% Down) -regulated and the uncorrected Fisher’s exact test p-value (Pvalue) for up and down comparisons (P Up, P Down) for over-representation of the KEGG pathway in the set.
Keywords
Tuberculosis diagnosis and management; Neutrophils; Tuberculosis; Catalysis; Platelets; Mycobacterium tuberculosis; Gene expression; Gene ontologiesItem Type | Dataset |
---|---|
Resource Type |
Resource Type Resource Description Dataset Quantitative |
Capture method | Unknown |
Date | 1 December 2022 |
Language(s) of written materials | English |
Creator(s) |
Meier, S; Seddon, JA; Maasdorp, E; Kleynhans, L; du Plessis, N; Loxton, AG; Malherbe, ST; Zak, DE; Thompson, E; Duffy, FJ; Kaufmann, SHE; Ottenhoff, THM; Scriba, TJ; Suliman, S |
LSHTM Faculty/Department | MRC Unit The Gambia at LSHTM |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Date Deposited | 12 Dec 2022 11:03 |
Last Modified | 12 Dec 2022 11:03 |
Publisher | PLOS ONE |
No files available. Please consult associated links.
- Data record - Figshare (Data)
- Data download - Figshare (Online Data Resource)
ORCID: https://orcid.org/0000-0002-5154-576X
ORCID: https://orcid.org/0000-0002-7083-4997
ORCID: https://orcid.org/0000-0001-5753-8766
ORCID: https://orcid.org/0000-0002-7761-0806