In Silico Spoligotyping

Coll, FORCID logo, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, TORCID logo (2012). In Silico Spoligotyping. [Dataset]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
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Spoligotyping is designed to address TB epidemiology and diagnosis by clustering samples into strain-types using differential fingerprinting patterns. Whilst advances in sequencing technologies are leading to whole genome bacterial characterisation, spoligotyping is still a technology of choice in the field. To bridge the gap, we have developed SpolPred, software to predict the spoligotype from raw sequence reads.

Keywords

Spoligotyping; Mycobacterium tuberculosis; Tuberculosis

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