Coll, F, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, T. 2012. In Silico Spoligotyping. [Online]. London School of Hygiene & Tropical Medicine, London, United Kingdom. Available from: https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Coll, F, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, T. In Silico Spoligotyping [Internet]. London School of Hygiene & Tropical Medicine; 2012. Available from: https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Coll, F, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, T (2012). In Silico Spoligotyping. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Description
Spoligotyping is designed to address TB epidemiology and diagnosis by clustering samples into strain-types using differential fingerprinting patterns. Whilst advances in sequencing technologies are leading to whole genome bacterial characterisation, spoligotyping is still a technology of choice in the field. To bridge the gap, we have developed SpolPred, software to predict the spoligotype from raw sequence reads.
Keywords
| Data capture method | Other |
|---|---|
| Date (Date published in a 3rd party system) | 2012 |
| Language(s) of written materials | English |
| Data Creators | Coll, F, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, T |
|---|---|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 09 Jan 2018 12:51 |
|---|---|
| Last Modified | 08 Oct 2024 10:59 |
| Publisher | London School of Hygiene & Tropical Medicine |
