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Domman, D, Quilici, M, Dorman, MJ, Njamkepo, E, Mutreja, A, Mather, AE, Delgado, G, Morales-Espinosa, R, Grimont, PAD, Lizárraga-Partida, ML, Bouchier, C, Aanensen, DM, Kuri-Morales, P, Tarr, CL, Dougan, G, Parkhill, J, Campos, J, Cravioto, A, Weill, F and Thomson, NR (2017). Integrated view of Vibrio cholerae in the Americas. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5427253.v1

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Foster-Nyarko, E, Holt, KE, Cottingham, H, Wick, R, Judd, LM, Lam, M, Wyres, KL, Stanton, T, Tsang, KK, David, S, Bridel, S, Palma, F, Aanensen, DM and Brisse, S (2023). Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19745608.v2

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Guevara, PD, Maes, M, Thanh, DP, Duarte, C, Rodriguez, EC, Montaño, LA, Dan, THN, Nguyen, TNT, Carey, ME, Campos, J, Chinen, I, Perez, E and Baker, S (2021). Profile of the organisms selected for sequencing. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009755.s001

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Holt, KE (2016). Acinetobacter baumannii GC1 recombination analysis. [Data Collection]. University of Melbourne. https://doi.org/10.4225/49/5690B341A0FDB

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Phelan, J, Coll, F, Mcnerney, R, Ascher, DB, Pires, DEV, Furnham, N, Coeck, N, Hill-Cawthorne, GA, Nair, MB, Mallard, K, Ramsay, A, Campino, S, Hibberd, M, Pain, A, Rigouts, L and Clark, T (2015). Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/PRJEB11653

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Quek, S, Cerdeira, L, Jeffries, CL, Tomlinson, S, Walker, T, Hughes, GL and Heinz, E (2022). Wolbachia endosymbionts in two Anopheles species indicates independent acquisitions and lack of prophage elements. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19576432.v1

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Simpson, KMJ, Mor, SM, Ward, MP, Collins, J, Flint, J, Hill-Cawthorne, GA and El Ghany, MA (2020). Dataset for "Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0229697.s002

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Wick, RR and Holt, KE (2022). Confusion matrices for the simulated-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s017

Wick, RR and Holt, KE (2022). Predictors of assembly quality. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s018

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Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HR, Abubakar, I and Colijn, C (2020). Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12413012.v1