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Cortes, T and Carvalho, L (2018). Whole genome sequencing of Mycobacterium tuberculosis strains resistant to D-cycloserine. [Data Collection]. ArrayExpress. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-5935/

Currier, RB, Cooper, A, Burrell-saward, H, MacLeod, A and Alsford, S (2018). Decoding the network of Trypanosoma brucei proteins that determines sensitivity to apolipoprotein-L1. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1006855

D

Domman, D, Chowdhury, F, Khan, AI, Dorman, MJ, Mutreja, A, Uddin, MI, Paul, A, Begum, YA, Charles, RC, Calderwood, SB, Bhuiyan, TR, Harris, JB, LaRocque, RC, Ryan, ET, Qadri, F and Thomson, NR (2018). Dhaka household cholera dataset. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6062804.v1

G

Giuliani, S, Silva, AC, Borba, Joyce V. V. B., Ramos, PIP, Paveley, RA, Muratov, EN, Andrade, CH and Furnham, N (2018). Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1006515

Gonçalves, BP, Kapulu, MC, Sawa, P, Guelbéogo, WM, Tiono, AB, Grignard, L, Stone, WJR, Hellewell, J, Lanke, K, Bastiaens, GJH, Bradley, J, Nébié, I, Ngoi, JM, Oriango, R, Mkabili, D, Nyaurah, M, Midega, J, Wirth, DF, Marsh, K, Churcher, TS, Bejon, P, Sirima, SB, Drakeley, C and Bousema, T (2018). Data from: Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.c3n63

H

Herman, LS, Fornace, K, Phelan, J, Grigg, MJ, Anstey, NM, William, T, Moon, RW, Blackman, MJ, Drakeley, CJ and Tetteh, KKA (2018). Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0006457

Higgins, M, Ravenhall, M, Ward, D, Phelan, J, Ibrahim, A, Forrest, MS, Clark, TG and Campino, S (2018). PrimedRPA: Primer design for Recombinase polymerase amplification assays. [Data Collection]. BioInformatics. https://doi.org/10.1093/bioinformatics/bty701

Holt, KE and Wyres, K (2018). Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. [Data Collection]. University of Melbourne, Australia. https://doi.org/10.4225/49/5ac3670f83717

K

Kucharski, AJ, Kama, M, Watson, CH, Aubry, M, Funk, S, Henderson, AD, Brady, OJ, Vanhomwegen, J, Manuguerra, J, Lau, CL, Edmunds, WJ, Aaskov, J, Nilles, EJ, Cao-Lormeau, V, Hue, S and Hibberd, ML (2018). adamkucharski/fiji-denv3-2014. [Data Collection]. Github. https://github.com/adamkucharski/fiji-denv3-2014

M

M. C. Lam, M, Wyres, KL, Duchêne, S, Wick, RR, Judd, LM, Gan, Y, Hoh, C, Archuleta, S, Molton, JS, Kalimuddin, S, Koh, TH, Passet, V, Brisse, S and Holt, KE (2018). Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-018-05114-7

P

Palittapongarnpim, P, Ajawatanawong, P, Viratyosin, W, Smittipat, N, Disratthakit, A, Mahasirimongkol, S, Yanai, H, Yamada, N, Nedsuwan, S, Imasanguan, W, Kantipong, P, Chaiyasirinroje, B, Wongyai, J, Toyo-oka, L, Phelan, J, Parkhill, J, Clark, TG, Hibberd, ML, Ruengchai, W, Palittapongarnpim, P, Juthayothin, T, Tongsima, S and Tokunaga, K (2018). Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-29986-3

R

Roman, F, Iñiguez, AM, Yeo, M and Jansen, AM (2018). Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.4013797.v1

S

Sepúlveda, N, Phelan, J, Diez-Benavente, E, Campino, S, Clark, TG, Hopkins, H, Sutherland, C, Drakeley, CJ and Beshir, KB (2018). Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. [Data Collection]. Infection, Genetics and Evolution. https://doi.org/10.1016/j.meegid.2018.04.039

Sobkowiak, B, Glynn, JR, Houben, Rein M. G. J., Mallard, K, Phelan, JE, Guerra-Assunção, JA, Banda, L, Mzembe, T, Viveiros, M, McNerney, R, Parkhill, J, Crampin, AC and Clark, TG (2018). Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6968636.v1

T

Tarr, SJ and Conway, DJ (2018). Diversity in gene expression profiles captured through highly resolved whole-transcriptome profiling of clinical and laboratory-adapted malaria parasite isolates. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113718

U

Ugarte-Ruiz, M, Domínguez, L, Corcionivoschi, N, Wren, BW, Dorrell, N and Gundogdu, O (2018). Exploring the oxidative, antimicrobial and genomic properties of Campylobacter jejuni strains isolated from poultry. [Data Collection]. Research in Veterinary Science. https://doi.org/10.1016/j.rvsc.2018.06.016