LSHTM Organisational Structure (3641)

Faculty of Infectious and Tropical Diseases (971)

Department of Infection Biology (150) Data Creators(s) Item Type No Grouping

A

Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. (2023) Ashall, James, Shah, Sonal, Biggs, Joseph R, Chang, Jui-Ning R, Jafari, Yalda, Brady, Oliver J., Mai, Huynh Kim, Lien, Le Thuy, Do Thai, Hung, Nguyen, Hien Anh Thi, Anh, Dang Duc, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Yoshida, Lay-Myint, Hafalla, Julius Clemence R, Hue, Stephane, Hibberd, Martin L.

Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. (2023) Ashall, James, Shah, Sonal, Biggs, Joseph R, Chang, Jui-Ning R, Jafari, Yalda, Brady, Oliver J., Mai, Huynh Kim, Lien, Le Thuy, Do Thai, Hung, Nguyen, Hien Anh Thi, Anh, Dang Duc, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Yoshida, Lay-Myint, Hafalla, Julius Clemence R, Hue, Stephane, Hibberd, Martin L.

C

typhoidgenomics/TyphiNET. (2023) Cerdeira, Louise, Dyson, Zoe Anne, Holt, Kathryn E.

MINT-data-v20230208. (2023) Churcher, Thomas, Stopard, Isaac, Hamlet, Arran, Dee, Dominic, Sanou, Antoine, Rowland, Mark, Guelbeogo, Moussa, Emidi, Basiliana, Mosha, Jacklin, Challenger, Joseph, Denz, Adrian, Charles, Giovanni, Russell, Emma, Fitzjohn, Rich, Winskill, Pete, Fornadel, Christen, Mclean, Tom, Digre, Peder, Wagman, Joe, Mosha, Frank, Cook, Jackie, Akogbéto, Martin, Djogbenou, Luc, Ranson, Hilary, Manjurano, Alphaxard, N'fale, Sagnon, Protopopoff, Natacha, Accrombessi, Manfred, Ngufor, Corine, Foster, Geraldine, Sherrard-Smith, Ellie

Development of a 2,4-Diaminothiazole Series for the Treatment of Human African Trypanosomiasis Highlights the Importance of Static–Cidal Screening of Analogues. (2023) Cleghorn, Laura A. T., Wall, Richard J., Albrecht, Sébastien, MacGowan, Stuart A., Norval, Suzanne, De Rycker, Manu, Woodland, Andrew, Spinks, Daniel, Thompson, Stephen, Patterson, Stephen, Corpas Lopez, Victoriano, Dey, Gourav, Collie, Iain T., Hallyburton, Irene, Kime, Robert, Simeons, Frederick R. C., Stojanovski, Laste, Frearson, Julie A., Wyatt, Paul G., Read, Kevin D., Gilbert, Ian H., Wyllie, Susan

D

Dataset: PRISM2 ICEMR Cohort. (2023) Dorsey, Grant, Kamya, Moses, Greenhouse, Bryan, Arinaitwe, Emmanuel, Kilama, Maxwell, Nankabirwa, Joaniter, Rek, John, Nsobya, Sam, Mawejje, Henry, Nzarubara, Bridget, Lavoy, Geoff, Kizza, Timothy, Musiime, Alex, Kigozi, Simon, Ssewanyana, Isaac, Rosenthal, Philip, Rodriguez-Barraquer, Isabel, Clark, Tamara, Conrad, Melissa, Staedke, Sarah G., Drakeley, Chris, Donnelly, Martin, Lindsay, Steve, Smith, David, Bousema, Teun, Andolina, Chiara

E

Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity. (2023) Eckold, Clare, van Doorn, Cassandra LR, Dockrell, Hazel, Ottenhoff, Tom HM, Vianello, Eleanora, Cliff, Jacqueline M

F

MULTIPLY - Baseline household survey, Sierra Leone. (2023) Fombah, Augustin E., Chen, Haily, Owusu-Kyei, Kwabena, Quinto, Llorenç, Gonzalez, Raquel, Williams, Julian, Berne, Mireia Llach, Wassenaar, Myrte, Jalloh, Abubakarr, Sunders, Joehenry, Ramirez, Maximo, Bertran-Cobo, Cesc, Saute, Francisco, Ekouevi, Didier K., Briand, Valérie, Kamara, Anitta R.Y., Sesay, Tom, Samai, Mohamed, Menéndez, Clara

Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. (2023) Foster-Nyarko, Ebenezer, Holt, Kathryn E., Cottingham, Hugh, Wick, Ryan, Judd, Louise M., Lam, Margaret, Wyres, Kelly L., Stanton, Thomas, Tsang, Kara K., David, Sophia, Bridel, Sébastien, Palma, Federica, Aanensen, David M, Brisse, Sylvain

G

Additional file 2 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023) Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, de Miranda, Cristiano Barreto, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M

Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023) Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, de Miranda, Cristiano Barreto, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M

Shigella induces epigenetic reprogramming of zebrafish neutrophils. (2023) Gomes, Margarida C, Brokatzky, Dominik, Bielecka, Magdalena K, Wardle, Fiona C, Mostowy, Serge

H

Global Typhoid Genomics Consortium 2022 - Genome Assemblies. (2023) Holt, Kathryn E.

L

A Pyridyl-Furan Series Developed from the Open Global Health Library Block Red Blood Cell Invasion and Protein Trafficking in Plasmodium falciparum through Potential Inhibition of the Parasite’s PI4KIIIB Enzyme. (2023) Ling, Dawson B., Nguyen, William, Looker, Oliver, Razook, Zahra, McCann, Kirsty, Barry, Alyssa E., Scheurer, Christian, Wittlin, Sergio, Famodimu, Mufuliat Toyin, Delves, Michael J., Bullen, Hayley E., Crabb, Brendan S., Sleebs, Brad E., Gilson, Paul R.

Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". (2023) London School of Hygiene & Tropical Medicine

Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. (2023) London School of Hygiene & Tropical Medicine

P

jodyphelan/host-pathogen. (2023) Phelan, Jody

jodyphelan/tbdb. (2023) Phelan, Jody E., Menzel, Peter

jodyphelan/malaria-db. (2023) Phelan, Jody, Manko, Emilia

jodyphelan/malaria-profiler. (2023) Phelan, Jody, Thorpe, Joseph

Data for: "Variation in missed doses and reasons for discontinuation of anti-tuberculosis drugs during hospital treatment for drug-resistant tuberculosis in South Africa". (2023) Pietersen, Elize, Anderson, Kim, Cox, Helen, Dheda, Keertan, Bian, Aihua, Shepherd, Bryan E, Sterling, Timothy R, Warren, Robin M, van der Heijden, Yuri F

R

Bis-6-amidino-benzothiazole Derivative that Cures Experimental Stage 1 African Trypanosomiasis with a Single Dose. (2023) Racané, Livio, Ptiček, Lucija, Kostrun, Sanja, Raić-Malić, Silvana, Taylor, Martin Craig, Delves, Michael, Alsford, Sam, Olmo, Francisco, Francisco, Amanda Fortes, Kelly, John M.

Proteome-wide antigenic profiling in Ugandan cohorts identifies associations between age, exposure intensity, and responses to repeat-containing antigens in Plasmodium falciparum. (2023) Raghavan, Madhura, Kalantar, Katrina, Duarte, Elias, Teyssier, Noam, Takahashi, Saki, Kung, Andrew, Rajan, Jayant, U., Rek, John, Tetteh, Kevin K. A., Drakeley, Chris, Ssewanyana, Isaac, Rodriguez-Barraquer, Isabel, Greenhouse, Bryan, DeRisi, Joseph

Label-free quantitation of proteins detected in SUB1-null schizonts in the presence or absence of C2. (2023) Ramaprasad, Abhinay, Burda, Paul-Christian, Koussis, Konstantinos, Thomas, James A, Pietsch, Emma, Calvani, Enrica, Howell, Steven A, MacRae, James I, Snijders, Ambrosius P, Gilberger, Tim-Wolf, Blackman, Michael J

Raw peak intensities of various lipid species measured before and after egress in RAP-treated (+RAP) and mock-treated (-RAP) LCAT:2loxPint parasites. (2023) Ramaprasad, Abhinay, Burda, Paul-Christian, Koussis, Konstantinos, Thomas, James A, Pietsch, Emma, Calvani, Enrica, Howell, Steven A, MacRae, James I, Snijders, Ambrosius P, Gilberger, Tim-Wolf, Blackman, Michael J

Raw peak intensities of various lipid species measured in LCAT:2loxPint egress-stalled schizonts following mock-or RAP-treatment at ring stages. (2023) Ramaprasad, Abhinay, Burda, Paul-Christian, Koussis, Konstantinos, Thomas, James A, Pietsch, Emma, Calvani, Enrica, Howell, Steven A, MacRae, James I, Snijders, Ambrosius P, Gilberger, Tim-Wolf, Blackman, Michael J

Sequences of oligonucleotides and other synthetic DNA used in this study. (2023) Ramaprasad, Abhinay, Burda, Paul-Christian, Koussis, Konstantinos, Thomas, James, Pietsch, Emma, Calvani, Enrica, Howell, Steven A, MacRae, James I, Snijders, Ambrosius P, Gilberger, Tim-Wolf, Blackman, Michael J

S

Processed INSDC dataset for MOV analysis. (2023) Sanderson, Theo

google-research/proteinfer. (2023) Sanderson, Theo, Bileschi, Maxwell, Belanger, David

theosanderson/molnupiravir. (2023) Sanderson, Theo, Ruis, Chris

Data for: "Travel and tuberculosis in migrants". (2023) Schwalb, Alvaro description

Restricted Randomisation Procedure and codes–inSCALE Mozambique. (2023) Soremekun, Seyi, Källander, Karin, Lingam, Raghu, Branco, Ana-Cristina Castel, Batura, Nehu, Strachan, Daniel Ll, Muiambo, Abel, Salomao, Nelson, Condoane, Juliao, Benhane, Fenias, Kasteng, Frida, Vassall, Anna, Hill, Zelee, ten Asbroek, Guus, Meek, Sylvia, Tibenderana, James, Kirkwood, Betty

inSCALE data collection forms. (2023) Soremekun, Seyi, Källander, Karin, Lingam, Raghu, Branco, Ana-Cristina Castel, Batura, Nehu, Strachan, Daniel Ll, Muiambo, Abel, Salomao, Nelson, Condoane, Juliao, Benhane, Fenias, Kasteng, Frida, Vassall, Anna, Hill, Zelee, ten Asbroek, Guus, Meek, Sylvia, Tibenderana, James, Kirkwood, Betty

Additional file 2 of Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains. (2023) Spadar, Anton, Perdigão, João, Campino, Susana, Clark, Taane G.

T

Collaborative Virtual Screening Identifies a 2‑Aryl-4-aminoquinazoline Series with Efficacy in an In Vivo Model of Trypanosoma cruzi Infection. (2023) Tawaraishi, Taisuke, Ochida, Atsuko, Akao, Yuichiro, Itono, Sachiko, Kamaura, Masahiro, Akther, Thamina, Shimada, Mitsuyuki, Canan, Stacie, Chowdhury, Sanjoy, Cao, Yafeng, Condroski, Kevin, Engkvist, Ola, Francisco, Amanda, Ghosh, Sunil, Kaki, Rina, Kelly, John M., Kimura, Chiaki, Kogej, Thierry, Nagaoka, Kazuya, Naito, Akira, Pairaudeau, Garry, Radu, Constantin, Roberts, Ieuan, Shum, David, Watanabe, Nao-aki, Xie, Huanxu, Yonezawa, Shuji, Yoshida, Osamu, Yoshida, Ryu, Mowbray, Charles, Perry, Benjamin

W

linfeng-wang/GMM4TB. (2023) Wang, Linfeng

Z

Evolutionary analysis of cellular reduction and anaerobicity in the hyper-prevalent gut microbe Blastocystis. (2023) Záhonová, Kristína, Low, Ross S., Warren, Christopher J., Cantoni, Diego, Herman, Emily K., Yiangou, Lyto, Ribeiro, Cláudia A., Phanprasert, Yasinee, Brown, Ian R., Rueckert, Sonja, Baker, Nicola L., Tachezy, Jan, Betts, Emma L., Gentekaki, Eleni, van der Giezen, Mark, Clark, C. Graham, Jackson, Andrew P., Dacks, Joel B., Tsaousis, Anastasios D.