outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Jombart, T
, Campbell, F and Fitzjohn, R
(2018).
outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data.
[Dataset].
The Comprehensive R Archive Network.
https://CRAN.R-project.org/package=outbreaker2
outbreaker2 is a Bayesian framework for integrating epidemiological and genetic data to reconstruct transmission trees of densely sampled outbreaks. It re-implements, generalises and replaces the model of outbreaker, and uses a modular approach which enables fine customisation of priors, likelihoods and parameter movements.
Keywords
Outbreak reconstruction, Transmission tree reconstructionItem Type | Dataset |
---|---|
Capture method | Other |
Date | 30 November 2018 |
Language(s) of written materials | English |
Creator(s) |
Jombart, T |
LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Funders |
Project Funder Grant Number Funder URI |
Date Deposited | 18 Dec 2018 10:55 |
Last Modified | 08 Jul 2021 12:52 |
Publisher | The Comprehensive R Archive Network |
Explore Further
- R Epidemics Consortium (RECON) (Data)
- Github (Data)
- The Comprehensive R Archive Network (Online Data Resource)
No files available. Please consult associated links.
- R Epidemics Consortium (RECON) (Data)
- Github (Data)
- The Comprehensive R Archive Network (Online Data Resource)
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ORCID: https://orcid.org/0000-0003-2226-8692