treespace: exploration of landscapes of phylogenetic trees

Jombart, TORCID logo, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Dataset]. Github. https://thibautjombart.github.io/treespace/
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treespace implements new methods for the exploration and analysis of distributions of phylogenetic trees for a given set of taxa. The main functions implemented in treespace are: treespace: explore landscapes of phylogenetic trees; treespaceServer: open up an application in a web browser for an interactive exploration of the diversity in a set of trees; findGroves: identify clusters of similar trees; plotGroves: scatterplot of groups of trees, and plotGrovesD3 which enables interactive plotting based on d3.js; medTree: find geometric median tree(s) to summarise a group of trees

Keywords

Incongruence; Multivariate analysis; Tree distances; Tree metric

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