Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T. 2012. VCF Viewer (VARB). [Online]. London School of Hygiene & Tropical Medicine, London, United Kingdom. Available from: https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T. VCF Viewer (VARB) [Internet]. London School of Hygiene & Tropical Medicine; 2012. Available from: https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T (2012). VCF Viewer (VARB). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Description
High throughput sequencing is generating large datasets that can be used provide important insights into genomic variation and biology. There is a need to visualize single nucleotide polymorphisms, insertions and deletions, and other structural variants from new sequence file formats. We have developed VarB software that can read in multi-sample VCF files, and visualize and critically assess contents and identify informative markers to discriminate between user-defined groups.
Keywords
| Data capture method | Other |
|---|---|
| Date (Date published in a 3rd party system) | 2012 |
| Language(s) of written materials | English |
| Data Creators | Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T |
|---|---|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 09 Jan 2018 12:43 |
|---|---|
| Last Modified | 08 Oct 2024 10:58 |
| Publisher | London School of Hygiene & Tropical Medicine |
