VCF Viewer (VARB)

Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, TORCID logo (2012). VCF Viewer (VARB). [Dataset]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
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High throughput sequencing is generating large datasets that can be used provide important insights into genomic variation and biology. There is a need to visualize single nucleotide polymorphisms, insertions and deletions, and other structural variants from new sequence file formats. We have developed VarB software that can read in multi-sample VCF files, and visualize and critically assess contents and identify informative markers to discriminate between user-defined groups.

Keywords

VarB; VCF; Single nucleotide polymorphisms

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