Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data

Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HRORCID logo, Abubakar, I and Colijn, C (2020). Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. [Dataset]. Figshare. https://doi.org/10.6084/m9.figshare.12413012.v1
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Supplementary Material and Supporting Data for ‘Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data’ as published in Microbial Genomics. The phylogenetic tree-building software beast2 (version 2.6.1) was used to build timed phylogenetic trees. The beast xml file is provided here, along with the H37Rv NC000962.3 reference genome.

Keywords

Genomic epidemiology; Infectious disease; Modelling; Machine learning; Tuberculosis; TB; Genomics

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