Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data

Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HRORCID logo, Abubakar, I and Colijn, C (2020). Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. [Dataset]. Figshare. https://doi.org/10.6084/m9.figshare.12413012.v1
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Supplementary Material and Supporting Data for ‘Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data’ as published in Microbial Genomics. The phylogenetic tree-building software beast2 (version 2.6.1) was used to build timed phylogenetic trees. The beast xml file is provided here, along with the H37Rv NC000962.3 reference genome.

Keywords

Genomic epidemiology, Infectious disease, Modelling, Machine learning, Tuberculosis, TB, Genomics

Item Type Dataset
Capture method Experiment: Laboratory
Date 18 September 2020
Language(s) of written materials English
Creator(s) Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HRORCID logo, Abubakar, I and Colijn, C
LSHTM Faculty/Department Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023)
Participating Institutions Imperial College London, London, United Kingdom, Simon Fraser University, Burnaby, Canada, University College London, London, United Kingdom, Public Health England, London, United Kingdom, University of Edinburgh, Edinburgh, United Kingdom
Funders
Project
Funder
Grant Number
Funder URI
UNSPECIFIED
Engineering and Physical Sciences Research Council
EP/K026003/1
http://dx.doi.org/10.13039/501100000266
UNSPECIFIED
Engineering and Physical Sciences Research Council
EP/N014529/1
http://dx.doi.org/10.13039/501100000266
UNSPECIFIED
Medical Research Council
MR/R008345/1
http://dx.doi.org/10.13039/501100000265
EPSRC PhD studentship
Engineering and Physical Sciences Research Council
UNSPECIFIED
http://dx.doi.org/10.13039/501100000266
Canada 150 Research Chairs
Federal Government of Canada
UNSPECIFIED
http://dx.doi.org/10.13039/501100000023
Date Deposited 19 Jan 2023 16:42
Last Modified 19 Jan 2023 16:42
Publisher Figshare

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