Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE. 2022. Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. [Online]. PLOS Neglected Tropical Diseases. Available from: https://doi.org/10.1371/journal.pntd.0010306.s006
Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE. Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence [Internet]. PLOS Neglected Tropical Diseases; 2022. Available from: https://doi.org/10.1371/journal.pntd.0010306.s006
Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE (2022). Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s006
Description
This table details regions filtered from PNG genotype 2.1.7 alignment, where repetitive regions were identified using the ncumer command in MUMmer (v3.23) and integrated prophage sequences detected using the PHAge Search Tool Enhanced Release. Further recombination were removed with Gubbins (v2.3.2).
| Data capture method | Unknown | ||||||||
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| Data Collection Period |
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| Date (Date published in a 3rd party system) | 28 March 2022 | ||||||||
| Geographical area covered (offline during plugin upgrade) |
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| Language(s) of written materials | English |
| Data Creators | Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE |
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| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom, Federation University, Churchill, Australia, James Cook University, Townsville, Australia, Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea, University of Sydney, Lismore, Australia, Monash University, Melbourne, Australia, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, Australia, University of Cambridge, Cambridge, United Kingdom |
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| Date Deposited | 09 Dec 2022 10:17 |
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| Last Modified | 09 Dec 2022 10:28 |
| Publisher | PLOS Neglected Tropical Diseases |
