Accession numbers and data for S. Typhi sequences used in this study

Dyson, ZA

; Malau, E; Horwood, PF; Ford, R; Siba, V; Yoannes, M; Pomat, W; Passey, M; Judd, LM; Ingle, DJ; Williamson, DA; Dougan, G; Greenhill, AR and Holt, KE

(2022). Accession numbers and data for S. Typhi sequences used in this study. [Dataset]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s005

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Details of antimicrobial susceptibility testing (AST) for n = 40 (88.9%) of travel-associated cases for chloramphenicol, ampicillin, sulfamethoxazole, trimethoprim, nalidixic acid, tetracycline, kanamycin, gentamycin, and spectinomycin. This includes the individual accession numbers for nucleotide sequences.

Keywords

Salmonella typhi; Genomics; Antimicrobial resistance; Phylogenetics; Typhoid; Sequence alignment; Phylogenetic analysis; Fevers

Item Type	Dataset
Resource Type	Resource Type Resource Description Dataset Quantitative
Capture method	Summary, Aggregation
Collection Period	From To 1980 2010
Date	28 March 2022
Geographical area covered (offline during plugin upgrade)	North Latitude East Longitude South Latitude West Longitude -6.76889 144.331 -6.76889 144.331
Language(s) of written materials	English
Creator(s)	Dyson, ZA ; Malau, E; Horwood, PF; Ford, R; Siba, V; Yoannes, M; Pomat, W; Passey, M; Judd, LM; Ingle, DJ; Williamson, DA; Dougan, G; Greenhill, AR and Holt, KE
LSHTM Faculty/Department	Faculty of Infectious and Tropical Diseases > Department of Infection Biology
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom; Federation University, Churchill, Australia; James Cook University, Townsville, Australia; Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea; University of Sydney, Lismore, Australia; Monash University, Melbourne, Australia; The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, Australia; University of Cambridge, Cambridge, United Kingdom
Funders	Project Funder Grant Number Funder URI STRATAA Wellcome Trust 106158/Z/14/Z http://dx.doi.org/10.13039/100010269 TyphiNET Horizon 2020 845681 http://dx.doi.org/10.13039/501100007601 Emerging Leadership Fellowship National Health and Medical Research Council GNT1195210 http://dx.doi.org/10.13039/501100000925 Emerging Leadership Fellowship National Health and Medical Research Council GNT1174555 http://dx.doi.org/10.13039/501100000925 UNSPECIFIED Sylvia and Charles Viertel Charitable Foundation UNSPECIFIED http://dx.doi.org/10.13039/100008717 UNSPECIFIED Bill and Melinda Gates Foundation OPP1175797 http://dx.doi.org/10.13039/100000865
Date Deposited	09 Dec 2022 10:26
Last Modified	09 Dec 2022 10:26
Publisher	PLOS Neglected Tropical Diseases