Pigott, DM, Golding, N, Mylne, A, Huang, Z, Henry, AJ, Weiss, DJ, Brady, OJ, Kraemer, MU, Smith, DL, Moyes, CL, Bhatt, S, Gething, PW, Horby, PW, Bogoch, II, Brownstein, JS, Mekaru, SR, Tatem, AJ, Khan, K and Hay, SI. 2014. Source code for analysis of the zoonotic niche of Ebolavirus. [Online]. GitHub, Inc.. Available from: https://doi.org/10.7554/eLife.04395.
Pigott, DM, Golding, N, Mylne, A, Huang, Z, Henry, AJ, Weiss, DJ, Brady, OJ, Kraemer, MU, Smith, DL, Moyes, CL, Bhatt, S, Gething, PW, Horby, PW, Bogoch, II, Brownstein, JS, Mekaru, SR, Tatem, AJ, Khan, K and Hay, SI. Source code for analysis of the zoonotic niche of Ebolavirus [Internet]. GitHub, Inc.; 2014. Available from: https://doi.org/10.7554/eLife.04395.
Pigott, DM, Golding, N, Mylne, A, Huang, Z, Henry, AJ, Weiss, DJ, Brady, OJ, Kraemer, MU, Smith, DL, Moyes, CL, Bhatt, S, Gething, PW, Horby, PW, Bogoch, II, Brownstein, JS, Mekaru, SR, Tatem, AJ, Khan, K and Hay, SI (2014). Source code for analysis of the zoonotic niche of Ebolavirus. [Data Collection]. GitHub, Inc.. https://doi.org/10.7554/eLife.04395.
Description
R source code used to perform the majority of the analysis for the eLife paper on mapping the zoonotic niche of Ebola virus disease in Africa. It will help the user to scrutinise the methodological approaches used, but cannot be used to fully reproduce the analysis, since the analysis relies on several very large data files (raster imagery, occurrence data etc.) The code is designed to run on a 64-core machine so the model fitting may slow on some machines.
| Data capture method | Simulation |
|---|---|
| Date (Date published in a 3rd party system) | 8 September 2014 |
| Language(s) of written materials | English |
| Data Creators | Pigott, DM, Golding, N, Mylne, A, Huang, Z, Henry, AJ, Weiss, DJ, Brady, OJ, Kraemer, MU, Smith, DL, Moyes, CL, Bhatt, S, Gething, PW, Horby, PW, Bogoch, II, Brownstein, JS, Mekaru, SR, Tatem, AJ, Khan, K and Hay, SI |
|---|---|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
| Participating Institutions | University of Oxford |
| Date Deposited | 23 Jun 2016 11:43 |
|---|---|
| Last Modified | 08 Jul 2021 12:49 |
| Publisher | GitHub, Inc. |
