Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C. 2018. treespace: exploration of landscapes of phylogenetic trees. [Online]. Github. Available from: https://thibautjombart.github.io/treespace/
Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C. treespace: exploration of landscapes of phylogenetic trees [Internet]. Github; 2018. Available from: https://thibautjombart.github.io/treespace/
Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Data Collection]. Github. https://thibautjombart.github.io/treespace/
Description
treespace implements new methods for the exploration and analysis of distributions of phylogenetic trees for a given set of taxa. The main functions implemented in treespace are: treespace: explore landscapes of phylogenetic trees; treespaceServer: open up an application in a web browser for an interactive exploration of the diversity in a set of trees; findGroves: identify clusters of similar trees; plotGroves: scatterplot of groups of trees, and plotGrovesD3 which enables interactive plotting based on d3.js; medTree: find geometric median tree(s) to summarise a group of trees
Keywords
| Data capture method | Other |
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| Date (Date published in a 3rd party system) | 14 May 2018 |
| Language(s) of written materials | English |
| Data Creators | Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C |
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| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Funders |
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| Date Deposited | 17 Dec 2018 17:58 |
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| Last Modified | 27 Apr 2022 18:19 |
| Publisher | Github |
