VCF Viewer (VARB)
Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T
(2012).
VCF Viewer (VARB).
[Dataset].
London School of Hygiene & Tropical Medicine, London, United Kingdom.
https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
High throughput sequencing is generating large datasets that can be used provide important insights into genomic variation and biology. There is a need to visualize single nucleotide polymorphisms, insertions and deletions, and other structural variants from new sequence file formats. We have developed VarB software that can read in multi-sample VCF files, and visualize and critically assess contents and identify informative markers to discriminate between user-defined groups.
Keywords
VarB, VCF, Single nucleotide polymorphismsItem Type | Dataset |
---|---|
Capture method | Other |
Date | 2012 |
Language(s) of written materials | English |
Creator(s) |
Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T |
LSHTM Faculty/Department |
Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019) |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Date Deposited | 09 Jan 2018 12:43 |
Last Modified | 08 Oct 2024 10:58 |
Publisher | London School of Hygiene & Tropical Medicine |
Explore Further
- PathogenSeq website (Internet Archive) (Online Data Resource)
No files available. Please consult associated links.
- PathogenSeq website (Internet Archive) (Online Data Resource)
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ORCID: https://orcid.org/0000-0001-8985-9265