Browse where type is Software and year is 2023
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Data Collection
Greener, R (2023). 0xr0bert/ubereats-scraper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6962078
Emery, JC, Dodd, PJ, Banu, S, Frascella, B, Garden, FL, Horton, KC, Hossain, S, Law, I, van Leth, F, Marks, GB, Nguyen, HB, Nguyen, HV, Onozaki, I, Quelapio, MID, Richards, AS, Shaikh, N, Tiemersma, EW, White, RG, Zaman, K, Cobelens, F and Houben, RM (2023). epidemery/subclinical_transmission. [Data Collection]. GitHub. https://github.com/epidemery/subclinical_transmission
Pearson, CAB, Hladish, T, Pillai, AN and Chao, D (2023). tjhladish/dengue-abm. [Data Collection]. Github. https://github.com/tjhladish/dengue-abm
Simons, D (2023). DidDrog11/data_for_gbif: Final version for Gigabyte. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7703228
Abbott, S, Russell, TW, Hellewell, J and Kucharski, AJ (2023). thimotei/legacy_ct_modelling: Final version. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223417
Abbott, S, Hellewell, J, Lucas, T, Funk, S and Gimma, A (2023). epiforecasts/ringbp. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3749529
Quevedo, DS, Gupte, P, Gomez, G, Gruson, H, Hartgerink, C, tracelac and Cucunubá, ZM (2023). epiverse-trace/vaccineff: vaccineff 0.0.1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11449783
Gibb, R (2023). rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10159288
Phelan, J and Thorpe, J (2023). jodyphelan/malaria-profiler. [Data Collection]. GitHub. https://github.com/jodyphelan/Malaria-Profiler
Namulondo, J, Nyangiri, OA, Kimuda, MP, Nambala, P, Nassuuna, J, Egesa, M, Nerima, B, Biryomumaisho, S, Mugasa, CM, Nabukenya, I, Kato, D, Elliott, A, Noyes, H, Tweyongyere, R, Matovu, E and Mulindwa, J (2023). RNA Sequence data analysis using DESeq2 pipeline. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011455.s009
Henderson, AD, Butler-Cole, BF, Wiedemann, M, Evans, D and Smith, R (2023). opensafely/openprompt-vaccine-long-covid. [Data Collection]. GitHub. https://github.com/opensafely/openprompt-vaccine-long-covid
Graham, S (2023). grahams99/Health-seeking-behaviour. [Data Collection]. Github. https://github.com/grahams99/Health-seeking-behaviour
Fu, H (2023). hfu915/dynamice_mrmaps. [Data Collection]. Github. https://github.com/hfu915/dynamice_mrmaps
Jung, S, Miura, F, Endo, A and Murayama, H (2023). SungmokJung/mpox_global: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10056592
Mclean, E (2023). Family network and household composition: a longitudinal dataset derived from the Karonga HDSS, in rural Malawi (author-written code). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10037084
Etienne, RS, Valente, L, Phillimore, AB, Haegeman, B, Lambert, JW, Santos Neves, P, Xie, S, Bilderbeek, RJ, Hildenbrandt, H, Hauffe, T, Laudanno, G, Kristensen, N and Scherrer, R (2023). DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=DAISIE
Pearson, CAB and Hladish, T (2023). tjhladish/AbcSmc. [Data Collection]. Github. https://github.com/tjhladish/AbcSmc
Zheng, B and lshbz1 (2023). opensafely/Paxlovid-and-sotrovimab. [Data Collection]. Github. https://github.com/opensafely/Paxlovid-and-sotrovimab
Pearson, CAB, Thompson, S, Van Zandvoort, K, Eggo, RM and Jarvis, CI (2023). cmmid/covidm_reports: HEA Snapshot. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7741616
Lambert, J, Gruson, H, Kucharski, AJ, Gupte, P, Salmon, M, Campos, AV and Monticone, P (2023). epiverse-trace/epiparameter. [Data Collection]. Github. https://github.com/epiverse-trace/epiparameter/
Wang, L (2023). linfeng-wang/GMM4TB. [Data Collection]. Github. https://github.com/linfeng-wang/GMM4TB
Waterlow, N (2023). NaomiWaterlow/markov_model: V1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8382636
Leclerc, QJ (2023). qleclerc/phage_antibiotic_dynamics. [Data Collection]. Github.
Knight, GM, Waterlow, N, Wildfire, J and Clements, AJ (2023). aj-clements/Vivli-AMR-KG. [Data Collection]. Github. https://github.com/aj-clements/Vivli-AMR-KG/
Garcia, KKS, Soremekun, S, Bottomley, C, Abrahão, AA, de Miranda, CB, Drakeley, C, Ramalho, WM and Siqueira, AM (2023). Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24151176.v1
Cerdeira, L, Dyson, ZA and Holt, KE (2023). typhoidgenomics/TyphiNET: New release. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.5338903
Gonçalves, BP (2023). BronnerG/Hosp_Vacc_analysis: v1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8252908
Wariri, O (2023). drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. [Data Collection]. Github. https://github.com/drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study
Zheng, B (2023). Anaphylaxis events following COVID-19 antiviral and neutralising monoclonal antibody treatment for non-hospitalised patients. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8144334
Prem, K (2023). kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8133734
Checchi, F (2023). francescochecchi/yem_diaspora_mortality. [Data Collection]. Github. https://github.com/francescochecchi/yem_diaspora_mortality
Graham, S (2023). grahams99/Enhanced_surveillance_questionnaire. [Data Collection]. Github. https://github.com/grahams99/Enhanced_surveillance_questionnaire
Soremekun, S, Källander, K, Lingam, R, Branco, AC, Batura, N, Strachan, DL, Muiambo, A, Salomao, N, Condoane, J, Benhane, F, Kasteng, F, Vassall, A, Hill, Z, ten Asbroek, G, Meek, S, Tibenderana, J and Kirkwood, B (2023). Restricted Randomisation Procedure and codes–inSCALE Mozambique. [Data Collection]. PLOS Digital Health. https://doi.org/10.1371/journal.pdig.0000235.s003
Bosse, N, Bracher, J, Abbott, S and Funk, S (2023). epiforecasts/transformation-forecast-evaluation. [Data Collection]. Github. https://github.com/epiforecasts/transformation-forecast-evaluation
Bolt, H (2023). ehr-lshtm/acute_kidney_injury_seasonality_ML. [Data Collection]. GitHub. https://github.com/ehr-lshtm/acute_kidney_injury_seasonality_ML
Herrett, E and Piehlmaier, DM (2023). opensafely/lone_households. [Data Collection]. Github. https://github.com/opensafely/lone_households/
Ekoriko, P (2023). lshtm-public/rds-ui. [Data Collection]. Bitbucket. https://bitbucket.org/lshtm-public/rds-ui
Lotto Batista, M, Rees, EM, Gómez, A, López, S, Castell, S, Kucharski, AJ, Ghozzi, S, Müller, GV and Lowe, R (2023). Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7865638
Mclean, E (2023). Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7797356
Abbott, S (2023). seabbs/badtobetter: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7799448
Richards, AS (2023). alexandrasrichards/natural_history_tb_disease. [Data Collection]. GitHub. https://github.com/alexandrasrichards/natural_history_tb_disease
Keddie, SH (2023). shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. [Data Collection]. Github. https://github.com/shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study
Gasparrini, A (2023). gasparrini/MCC-SO2. [Data Collection]. Github. https://github.com/gasparrini/MCC-SO2
Napier, G (2023). GaryNapier/spolpred. [Data Collection]. Github. https://github.com/GaryNapier/spolpred
Giannini, F and Abbas, K (2023). fionagi/GASImpactModel. [Data Collection]. GitHub. https://github.com/fionagi/GASImpactModel
Leung, WTM, Meeyai, A, Holt, HR, Khieu, B, Chhay, T, Seng, S, Pok, S, Chiv, P, Drake, T and Rudge, J (2023). Social contact patterns relevant for infectious disease transmission in Cambodia. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7642647
Clifford, S and Hackman, J (2023). Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7618847
Riffe, T and Aburto, JM (2023). A global assessment of the impact of violence on lifetime uncertainty. [Data Collection]. OSF. https://osf.io/degjy
Liu, Y, Procter, SR, Pearson, CAB, Madriz Montero, A, Torres-Rueda, S, Asfaw, E, Uzochukwu, B, Drake, T, Bergren, E, Eggo, RM, Ruiz, F, Ndembi, N, Nonvignon, J, Jit, M and Vassall, A (2023). yangclaraliu/covid_vac_africa: BMCMed_R3. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7618748
Pillai, AN, Hladish, T, Pearson, CAB, Toh, B, Noah4944 and Stoltzfus, A (2023). tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7601663
Thindwa, D and Clifford, S (2023). deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7592904
Phelan, J (2023). jodyphelan/host-pathogen. [Data Collection]. Github. https://github.com/jodyphelan/host-pathogen
Unwin, J, Challenger, J, Watson, OJ, Hellewell, J, FitzJohn, R and Sherrard-Smith, E (2023). mrc-ide/deterministic-malaria-model: nets_paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7559615
Nab, L, Davy, S, Parker, E and Hulme, W (2023). opensafely/covid_mortality_over_time. [Data Collection]. Github. https://github.com/opensafely/covid_mortality_over_time
Phelan, JE and Menzel, P (2023). jodyphelan/tbdb. [Data Collection]. Github. https://github.com/jodyphelan/tbdb
Pung, R, Clapham, HE, Russell, TW, Lee, VJ and Kucharski, AJ (2023). Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7538040
Pung, R (2023). rachaelpung/covid_missed_infections. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7538046
Glynn, JR (2023). Dataset codebook for a 30-year population-based study examining the contribution of remote M.tuberculosis infection to tuberculosis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002829.
Procter, SR (2023). mert0248/GBS-vax-econ-model. [Data Collection]. Github. https://github.com/mert0248/GBS-vax-econ-model