Item Type Title No Grouping

Dataset

0xr0bert/ubereats-scraper. (2023) Greener, Robert

epidemery/subclinical_transmission. (2023) Emery, Jon C, Dodd, Peter J, Banu, Sayera, Frascella, Beatrice, Garden, Frances L, Horton, Katherine C, Hossain, Shahed, Law, Irwin, van Leth, Frank, Marks, Guy B, Nguyen, Hoa Binh, Nguyen, Hai Viet, Onozaki, Ikushi, Quelapio, Maria Imelda D, Richards, Alexandra S, Shaikh, Nabila, Tiemersma, Edine W, White, Richard G, Zaman, Khalequ, Cobelens, Frank, Houben, Rein MGJ

tjhladish/dengue-abm. (2023) Pearson, Carl A. B., Hladish, Thomas, Pillai, Alexander N., Chao, Dennis

DidDrog11/data_for_gbif: Final version for Gigabyte. (2023) Simons, David

thimotei/legacy_ct_modelling: Final version. (2023) Abbott, Sam, Russell, Timothy W., Hellewell, Joel, Kucharski, Adam J.

epiforecasts/ringbp. (2023) Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy

epiverse-trace/vaccineff: vaccineff 0.0.1. (2023) Quevedo, David Santiago, Gupte, Pratik, Gomez, Geraldine, Gruson, Hugo, Hartgerink, Chris, tracelac, Cucunubá, Zulma M.

rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. (2023) Gibb, Rory

jodyphelan/malaria-profiler. (2023) Phelan, Jody, Thorpe, Joseph

RNA Sequence data analysis using DESeq2 pipeline. (2023) Namulondo, Joyce, Nyangiri, Oscar Asanya, Kimuda, Magambo Phillip, Nambala, Peter, Nassuuna, Jacent, Egesa, Moses, Nerima, Barbara, Biryomumaisho, Savino, Mugasa, Claire Mack, Nabukenya, Immaculate, Kato, Drago, Elliott, Alison, Noyes, Harry, Tweyongyere, Robert, Matovu, Enock, Mulindwa, Julius

opensafely/openprompt-vaccine-long-covid. (2023) Henderson, Alasdair D, Butler-Cole, Ben FC, Wiedemann, Milan, Evans, David, Smith, Rebecca

grahams99/Health-seeking-behaviour. (2023) Graham, Sophie

hfu915/dynamice_mrmaps. (2023) Fu, Han

SungmokJung/mpox_global: Initial release. (2023) Jung, Sung-mok, Miura, Fuminari, Endo, Akira, Murayama, Hiroaki

Family network and household composition: a longitudinal dataset derived from the Karonga HDSS, in rural Malawi (author-written code). (2023) Mclean, Estelle

rsetienne/DAISIE. (2023) Neves, Pedro Santos, Lambert, Joshua W., Etienne, Rampal S., Bilderbeek, Richel, Xie, Shu, Valente, Luis, Hildenbrandt, H, Scherrer, Raphaël, Yangshen0325

DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023) Etienne, Rampal S., Valente, Luis, Phillimore, Albert B., Haegeman, Bart, Lambert, Joshua W., Santos Neves, Pedro, Xie, Shu, Bilderbeek, Richèl J.C., Hildenbrandt, Hanno, Hauffe, Torsten, Laudanno, Giovanni, Kristensen, Nadiah, Scherrer, Raphael

tjhladish/AbcSmc. (2023) Pearson, Carl A. B., Hladish, Thomas

VN Types Bayesian Modelling. (2023) Bradley, Ellen

opensafely/Paxlovid-and-sotrovimab. (2023) Zheng, Bang, lshbz1

cmmid/covidm_reports: HEA Snapshot. (2023) Pearson, Carl A. B., Thompson, Sam, Van Zandvoort, Kevin, Eggo, Rosalind M., Jarvis, Christopher I.

WorldHealthOrganization/mca-pretermbirths-analysis. (2023) Bradley, Ellen, Lopez, Gerard

epiverse-trace/epiparameter. (2023) Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Gupte, Pratik, Salmon, Maëlle, Campos, Andree Valle, Monticone, Pietro

linfeng-wang/GMM4TB. (2023) Wang, Linfeng

NaomiWaterlow/markov_model: V1.0.0. (2023) Waterlow, Naomi

qleclerc/phage_antibiotic_dynamics. (2023) Leclerc, Quentin J.

aj-clements/Vivli-AMR-KG. (2023) Knight, Gwenan M, Waterlow, Naomi, Wildfire, Jacob, Clements, Alastair J

Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023) Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, de Miranda, Cristiano Barreto, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M

typhoidgenomics/TyphiNET. (2023) Cerdeira, Louise, Dyson, Zoe Anne, Holt, Kathryn E.

BronnerG/Hosp_Vacc_analysis: v1. (2023) Gonçalves, Bronner P.

drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. (2023) Wariri, Oghenebrume

Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023) Hou, Zhiyuan, Lai, Xiaozhen, Liu, Yang, Jit, Mark, Larson, Heidi, Hai, Fang

Anaphylaxis events following COVID-19 antiviral and neutralising monoclonal antibody treatment for non-hospitalised patients. (2023) Zheng, Bang

kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. (2023) Prem, Kiesha

francescochecchi/yem_diaspora_mortality. (2023) Checchi, Francesco

grahams99/Enhanced_surveillance_questionnaire. (2023) Graham, Sophie

Restricted Randomisation Procedure and codes–inSCALE Mozambique. (2023) Soremekun, Seyi, Källander, Karin, Lingam, Raghu, Branco, Ana-Cristina Castel, Batura, Nehu, Strachan, Daniel Ll, Muiambo, Abel, Salomao, Nelson, Condoane, Juliao, Benhane, Fenias, Kasteng, Frida, Vassall, Anna, Hill, Zelee, ten Asbroek, Guus, Meek, Sylvia, Tibenderana, James, Kirkwood, Betty

epiforecasts/transformation-forecast-evaluation. (2023) Bosse, Nikos, Bracher, Johannes, Abbott, Sam, Funk, Sebastian

ehr-lshtm/acute_kidney_injury_seasonality_ML. (2023) Bolt, Hikaru

opensafely/lone_households. (2023) Herrett, Emily, Piehlmaier, Dominik M

lshtm-public/rds-ui. (2023) Ekoriko, Promise

Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. (2023) Lotto Batista, Martín, Rees, Eleanor M., Gómez, Andrea, López, Soledad, Castell, Stefanie, Kucharski, Adam J., Ghozzi, Stéphane, Müller, Gabriela V, Lowe, Rachel

Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). (2023) Mclean, Estelle

seabbs/badtobetter: Initial release. (2023) Abbott, Sam

alexandrasrichards/natural_history_tb_disease. (2023) Richards, Alexandra S

shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. (2023) Keddie, Suzanne H

gasparrini/MCC-SO2. (2023) Gasparrini, Antonio

google-research/proteinfer. (2023) Sanderson, Theo, Bileschi, Maxwell, Belanger, David

Eyedeet/vaccine_methods_ehr_public/. (2023) Suffel, Anne Marie

GaryNapier/spolpred. (2023) Napier, Gary

fionagi/GASImpactModel. (2023) Giannini, Fiona, Abbas, Kaja

Social contact patterns relevant for infectious disease transmission in Cambodia. (2023) Leung, William T. M., Meeyai, Aronrag, Holt, Hannah R., Khieu, Borin, Chhay, Ty, Seng, Sokeyra, Pok, Samkol, Chiv, Phiny, Drake, Tom, Rudge, James

Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. (2023) Clifford, Samuel, Hackman, Jada

A global assessment of the impact of violence on lifetime uncertainty. (2023) Riffe, Tim, Aburto, José Manuel

yangclaraliu/covid_vac_africa: BMCMed_R3. (2023) Liu, Yang, Procter, Simon R, Pearson, Carl A. B., Madriz Montero, Andres, Torres-Rueda, Sergio, Asfaw, Elias, Uzochukwu, Benjamin, Drake, Tom, Bergren, Eleanor, Eggo, Rosalind M., Ruiz, Francis, Ndembi, Nicaise, Nonvignon, Justice, Jit, Mark, Vassall, Anna

tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023) Pillai, Alexander N., Hladish, Thomas, Pearson, Carl A. B., Toh, Ben, Noah4944, Stoltzfus, Arlin

deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. (2023) Thindwa, Deus, Clifford, Samuel

jodyphelan/host-pathogen. (2023) Phelan, Jody

mrc-ide/deterministic-malaria-model: nets_paper. (2023) Unwin, Juliette, Challenger, Joseph, Watson, O. J., Hellewell, Joel, FitzJohn, Rich, Sherrard-Smith, Ellie

opensafely/covid_mortality_over_time. (2023) Nab, Linda, Davy, Simon, Parker, Edward, Hulme, Will

jodyphelan/tbdb. (2023) Phelan, Jody E., Menzel, Peter

Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. (2023) Pung, Rachael, Clapham, Hannah E, Russell, Timothy W., Lee, Vernon J., Kucharski, Adam J.

rachaelpung/covid_missed_infections. (2023) Pung, Rachael

Dataset codebook for a 30-year population-based study examining the contribution of remote M.tuberculosis infection to tuberculosis. (2023) Glynn, Judith R. description

mert0248/GBS-vax-econ-model. (2023) Procter, Simon R