Item Type Title No Grouping

0xr0bert/ubereats-scraper. (2023) Greener, Robert

epidemery/subclinical_transmission. (2023) Emery, Jon C; Dodd, Peter J; Banu, Sayera; Frascella, Beatrice; Garden, Frances L; Horton, Katherine C; Hossain, Shahed; Law, Irwin; van Leth, Frank; Marks, Guy B; Nguyen, Hoa Binh; Nguyen, Hai Viet; Onozaki, Ikushi; Quelapio, Maria Imelda D; Richards, Alexandra S; Shaikh, Nabila; Tiemersma, Edine W; White, Richard G; Zaman, Khalequ; Cobelens, Frank; Houben, Rein MGJ

tjhladish/dengue-abm. (2023) Pearson, Carl A. B.; Hladish, Thomas; Pillai, Alexander N.; Chao, Dennis

DidDrog11/data_for_gbif: Final version for Gigabyte. (2023) Simons, David

thimotei/legacy_ct_modelling: Final version. (2023) Abbott, Sam; Russell, Timothy W.; Hellewell, Joel; Kucharski, Adam J.

epiforecasts/ringbp. (2023) Abbott, Sam; Hellewell, Joel; Lucas, Tim; Funk, Sebastian; Gimma, Amy

epiverse-trace/vaccineff: vaccineff 0.0.1. (2023) Quevedo, David Santiago; Gupte, Pratik; Gomez, Geraldine; Gruson, Hugo; Hartgerink, Chris; tracelac; Cucunubá, Zulma M.

rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. (2023) Gibb, Rory

jodyphelan/malaria-profiler. (2023) Phelan, Jody; Thorpe, Joseph

RNA Sequence data analysis using DESeq2 pipeline. (2023) Namulondo, Joyce; Nyangiri, Oscar Asanya; Kimuda, Magambo Phillip; Nambala, Peter; Nassuuna, Jacent; Egesa, Moses; Nerima, Barbara; Biryomumaisho, Savino; Mugasa, Claire Mack; Nabukenya, Immaculate; Kato, Drago; Elliott, Alison; Noyes, Harry; Tweyongyere, Robert; Matovu, Enock; Mulindwa, Julius

opensafely/openprompt-vaccine-long-covid. (2023) Henderson, Alasdair D; Butler-Cole, Ben FC; Wiedemann, Milan; Evans, David; Smith, Rebecca

grahams99/Health-seeking-behaviour. (2023) Graham, Sophie

hfu915/dynamice_mrmaps. (2023) Fu, Han

SungmokJung/mpox_global: Initial release. (2023) Jung, Sung-mok; Miura, Fuminari; Endo, Akira; Murayama, Hiroaki

Family network and household composition: a longitudinal dataset derived from the Karonga HDSS, in rural Malawi (author-written code). (2023) Mclean, Estelle

rsetienne/DAISIE. (2023) Neves, Pedro Santos; Lambert, Joshua W.; Etienne, Rampal S.; Bilderbeek, Richel; Xie, Shu; Valente, Luis; Hildenbrandt, H; Scherrer, Raphaël; Yangshen0325

DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023) Etienne, Rampal S.; Valente, Luis; Phillimore, Albert B.; Haegeman, Bart; Lambert, Joshua W.; Santos Neves, Pedro; Xie, Shu; Bilderbeek, Richèl J.C.; Hildenbrandt, Hanno; Hauffe, Torsten; Laudanno, Giovanni; Kristensen, Nadiah; Scherrer, Raphael

tjhladish/AbcSmc. (2023) Pearson, Carl A. B.; Hladish, Thomas

VN Types Bayesian Modelling. (2023) Bradley, Ellen

opensafely/Paxlovid-and-sotrovimab. (2023) Zheng, Bang; lshbz1

cmmid/covidm_reports: HEA Snapshot. (2023) Pearson, Carl A. B.; Thompson, Sam; Van Zandvoort, Kevin; Eggo, Rosalind M.; Jarvis, Christopher I.

WorldHealthOrganization/mca-pretermbirths-analysis. (2023) Bradley, Ellen; Lopez, Gerard

epiverse-trace/epiparameter. (2023) Lambert, Joshua; Gruson, Hugo; Kucharski, Adam J.; Gupte, Pratik; Salmon, Maëlle; Campos, Andree Valle; Monticone, Pietro

linfeng-wang/GMM4TB. (2023) Wang, Linfeng

NaomiWaterlow/markov_model: V1.0.0. (2023) Waterlow, Naomi

qleclerc/phage_antibiotic_dynamics. (2023) Leclerc, Quentin J.

Free School Meals Natural Experiment. (2023) Petersen, Jakob; Dezateux, Carol

aj-clements/Vivli-AMR-KG. (2023) Knight, Gwenan M; Waterlow, Naomi; Wildfire, Jacob; Clements, Alastair J

Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023) Garcia, Klauss Kleydmann Sabino; Soremekun, Seyi; Bottomley, Christian; Abrahão, Amanda Amaral; de Miranda, Cristiano Barreto; Drakeley, Chris; Ramalho, Walter Massa; Siqueira, André M

typhoidgenomics/TyphiNET. (2023) Cerdeira, Louise; Dyson, Zoe Anne; Holt, Kathryn E.

BronnerG/Hosp_Vacc_analysis: v1. (2023) Gonçalves, Bronner P.

drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. (2023) Wariri, Oghenebrume

Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023) Hou, Zhiyuan; Lai, Xiaozhen; Liu, Yang; Jit, Mark; Larson, Heidi; Hai, Fang

Anaphylaxis events following COVID-19 antiviral and neutralising monoclonal antibody treatment for non-hospitalised patients. (2023) Zheng, Bang

kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. (2023) Prem, Kiesha

francescochecchi/yem_diaspora_mortality. (2023) Checchi, Francesco

grahams99/Enhanced_surveillance_questionnaire. (2023) Graham, Sophie

Restricted Randomisation Procedure and codes–inSCALE Mozambique. (2023) Soremekun, Seyi; Källander, Karin; Lingam, Raghu; Branco, Ana-Cristina Castel; Batura, Nehu; Strachan, Daniel Ll; Muiambo, Abel; Salomao, Nelson; Condoane, Juliao; Benhane, Fenias; Kasteng, Frida; Vassall, Anna; Hill, Zelee; ten Asbroek, Guus; Meek, Sylvia; Tibenderana, James; Kirkwood, Betty

epiforecasts/transformation-forecast-evaluation. (2023) Bosse, Nikos; Bracher, Johannes; Abbott, Sam; Funk, Sebastian

ehr-lshtm/acute_kidney_injury_seasonality_ML. (2023) Bolt, Hikaru

opensafely/lone_households. (2023) Herrett, Emily; Piehlmaier, Dominik M

lshtm-public/rds-ui. (2023) Ekoriko, Promise

Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. (2023) Lotto Batista, Martín; Rees, Eleanor M.; Gómez, Andrea; López, Soledad; Castell, Stefanie; Kucharski, Adam J.; Ghozzi, Stéphane; Müller, Gabriela V; Lowe, Rachel

Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). (2023) Mclean, Estelle

seabbs/badtobetter: Initial release. (2023) Abbott, Sam

alexandrasrichards/natural_history_tb_disease. (2023) Richards, Alexandra S

shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. (2023) Keddie, Suzanne H

gasparrini/MCC-SO2. (2023) Gasparrini, Antonio

google-research/proteinfer. (2023) Sanderson, Theo; Bileschi, Maxwell; Belanger, David

Eyedeet/vaccine_methods_ehr_public/. (2023) Suffel, Anne Marie

GaryNapier/spolpred. (2023) Napier, Gary

fionagi/GASImpactModel. (2023) Giannini, Fiona; Abbas, Kaja

Social contact patterns relevant for infectious disease transmission in Cambodia. (2023) Leung, William T. M.; Meeyai, Aronrag; Holt, Hannah R.; Khieu, Borin; Chhay, Ty; Seng, Sokeyra; Pok, Samkol; Chiv, Phiny; Drake, Tom; Rudge, James

Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. (2023) Clifford, Samuel; Hackman, Jada

A global assessment of the impact of violence on lifetime uncertainty. (2023) Riffe, Tim; Aburto, José Manuel

yangclaraliu/covid_vac_africa: BMCMed_R3. (2023) Liu, Yang; Procter, Simon R; Pearson, Carl A. B.; Madriz Montero, Andres; Torres-Rueda, Sergio; Asfaw, Elias; Uzochukwu, Benjamin; Drake, Tom; Bergren, Eleanor; Eggo, Rosalind M.; Ruiz, Francis; Ndembi, Nicaise; Nonvignon, Justice; Jit, Mark; Vassall, Anna

tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023) Pillai, Alexander N.; Hladish, Thomas; Pearson, Carl A. B.; Toh, Ben; Noah4944; Stoltzfus, Arlin

deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. (2023) Thindwa, Deus; Clifford, Samuel

jodyphelan/host-pathogen. (2023) Phelan, Jody

mrc-ide/deterministic-malaria-model: nets_paper. (2023) Unwin, Juliette; Challenger, Joseph; Watson, O. J.; Hellewell, Joel; FitzJohn, Rich; Sherrard-Smith, Ellie

opensafely/covid_mortality_over_time. (2023) Nab, Linda; Davy, Simon; Parker, Edward; Hulme, Will

jodyphelan/tbdb. (2023) Phelan, Jody E.; Menzel, Peter

Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. (2023) Pung, Rachael; Clapham, Hannah E; Russell, Timothy W.; Lee, Vernon J.; Kucharski, Adam J.

rachaelpung/covid_missed_infections. (2023) Pung, Rachael

Dataset codebook for a 30-year population-based study examining the contribution of remote M.tuberculosis infection to tuberculosis. (2023) Glynn, Judith R. description

mert0248/GBS-vax-econ-model. (2023) Procter, Simon R