Research Centres (1729)

Centre for the Mathematical Modelling of Infectious Diseases (122) Data Creators(s) Item Type No Grouping

A

Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021) Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021) Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021) Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021) Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021) Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian

epiforecasts/forecast.vocs. (2021) Abbott, Sam; Bracher, Johannes

epiforecasts/covid19.nhs.data: Initial release. (2021) Abbott, Sam; Meakin, Sophie

B

Data from: Higher gametocyte production and mosquito infectivity in chronic compared to incident Plasmodium falciparum infections. (2021) Bousema, Teun

D

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021) Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021) Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katherine E.; Edmunds, W. John

Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G.; Jarvis, Christopher I.; CMMID COVID-19 Working Group; Edmunds, W. John; Jewell, Nicholas P.; Diaz-Ordaz, Karla; Keogh, Ruth H.

F

lshtm-vimc/dynamice. (2021) Fu, Han; Abbas, Kaja M.

Study database for: "Adverse pregnancy outcomes are associated with Plasmodium vivax malaria in a prospective cohort of women from the Brazilian Amazon". (2021) Fuehrer, Hans-Peter; Dombrowski, Jamille Gregório; Barateiro, André; Peixoto, Erika Paula Machado; Barros, André Boler Cláudio da Silva; Souza, Rodrigo Medeiros de; Clark, Taane Gregory; Campino, Susana; Wrenger, Carsten; Wunderlich, Gerhard; Palmisano, Giuseppe; Epiphanio, Sabrina; Gonçalves, Lígia Antunes; Marinho, Claudio Romero Farias

G

Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. (2021) Gaskell, Katherine M.; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy h.; Goldblatt, David; Eggo, Rosalind M.; Marks, Michael

CoMix social contact data (UK). (2021) Gimma, Amy; Wong, Kerry LM; Van Xandvoort, Kevin; Jarvis, Christopher I.; Edmunds, W. John

J

SungmokJung/Projection_Japan_COVID19 v1.0.0. (2021) Jung, Sung-mok; Endo, Akira; Kinoshita, Ryo; Nishiura, Hiroshi

K

mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021) Koltai, Mihaly

Datasets and code for "Mapping the plague through natural language processing". (2021) Krauer, Fabienne; Schmid, Boris V.

adamkucharski/covid-import-model. (2021) Kucharski, Adam J.

L

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021) Liu, Yang; Sandmann, Frank G.; Barnard, Rosanna C.; Pearson, Carl A.B.; CMMID Working-19 Working Group; Pastore, Roberta; Pebody, Richard; Flasche, Stefan; Jit, Mark

Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. (2021) Liu, Yang; Sandmann, Frank; Barnard, Rosanna C.; Pearson, Carl A. B.; LSHTM CMMID COVID-19 Working Group; Davies, Nicholas G.; Jit, Mark

M

d-mayerova/Vaccine_confidence_Albania. (2021) Mayerová, Daniela; Abbas, Kaja M.

NickyMcC/WithinClinics. (2021) McCreesh, Nicky

NickyMcC/CasualAgeMixing. (2021) Mccreesh, Nicky

CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021) Munday, James D; Jarvis, Christopher I.; Gimma, Amy; Wong, Kerry L; van Zandvoort, Kevin; Funk, Sebastian; Edmunds, W. John

N

Replication Data for: Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. (2021) Nyaguthii, Dickson Machira; Otieno, Grieven P.; Kombe, Ivy K.; Koech, Dorothy; Mutunga, Martin; Medley, Graham F.; Nokes, D. James; Munywoki, Patrick K.

P

Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021) Pavelka, Martin; van Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Jarcuska, Pavel; Krajci, Marek; Flasche, Stefan; Funk, Sebastian

kieshaprem/synthetic-contact-matrices. (2021) Prem, Kiesha

rachaelpung/serial_interval_covid_b.1.617.2. (2021) Pung, Rachael

Q

cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy

cmmid/quar_test_contact_tracing. (2021) Quilty, Billy

W

reichlab/covidHubUtils. (2021) Wang, Serena Yijin; Stark, Ariane; Evan Ray; Bosse, Nikos; Reich, Nicholas G; Sherratt, Katharine; Shah, Apurv; Wattanachit, Nutcha; Khoale1096; Huang, Yuxin David; Gerding, Aaron; Gruson, Hugo; Cramer, Estee; Shandross, Li; Abbott, Sam; Funk, Sebastian