Research Centres (1716)

Centre for the Mathematical Modelling of Infectious Diseases (121) Data Creators(s) Item Type No Grouping

A

Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

epiforecasts/forecast.vocs. (2021) Abbott, Sam, Bracher, Johannes

epiforecasts/covid19.nhs.data: Initial release. (2021) Abbott, Sam, Meakin, Sophie

B

Data from: Higher gametocyte production and mosquito infectivity in chronic compared to incident Plasmodium falciparum infections. (2021) Bousema, Teun

D

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John

Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G., Jarvis, Christopher I., CMMID COVID-19 Working Group, Edmunds, W. John, Jewell, Nicholas P., Diaz-Ordaz, Karla, Keogh, Ruth H.

F

lshtm-vimc/dynamice. (2021) Fu, Han, Abbas, Kaja M.

Study database for: "Adverse pregnancy outcomes are associated with Plasmodium vivax malaria in a prospective cohort of women from the Brazilian Amazon". (2021) Fuehrer, Hans-Peter, Dombrowski, Jamille Gregório, Barateiro, André, Peixoto, Erika Paula Machado, Barros, André Boler Cláudio da Silva, Souza, Rodrigo Medeiros de, Clark, Taane Gregory, Campino, Susana, Wrenger, Carsten, Wunderlich, Gerhard, Palmisano, Giuseppe, Epiphanio, Sabrina, Gonçalves, Lígia Antunes, Marinho, Claudio Romero Farias

G

Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. (2021) Gaskell, Katherine M., Johnson, Marina, Gould, Victoria, Hunt, Adam, Stone, Neil RH, Waites, William, Kasstan, Ben, Chantler, Tracey, Lal, Sham, Roberts, Chrissy h., Goldblatt, David, Eggo, Rosalind M., Marks, Michael

CoMix social contact data (UK). (2021) Gimma, Amy, Wong, Kerry LM, Van Xandvoort, Kevin, Jarvis, Christopher I., Edmunds, W. John

J

SungmokJung/Projection_Japan_COVID19 v1.0.0. (2021) Jung, Sung-mok, Endo, Akira, Kinoshita, Ryo, Nishiura, Hiroshi

K

mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021) Koltai, Mihaly

Datasets and code for "Mapping the plague through natural language processing". (2021) Krauer, Fabienne, Schmid, Boris V.

adamkucharski/covid-import-model. (2021) Kucharski, Adam J.

L

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021) Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark

Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. (2021) Liu, Yang, Sandmann, Frank, Barnard, Rosanna C., Pearson, Carl A. B., LSHTM CMMID COVID-19 Working Group, Davies, Nicholas G., Jit, Mark

M

d-mayerova/Vaccine_confidence_Albania. (2021) Mayerová, Daniela, Abbas, Kaja M.

NickyMcC/WithinClinics. (2021) McCreesh, Nicky

NickyMcC/CasualAgeMixing. (2021) Mccreesh, Nicky

CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021) Munday, James D, Jarvis, Christopher I., Gimma, Amy, Wong, Kerry L, van Zandvoort, Kevin, Funk, Sebastian, Edmunds, W. John

N

Replication Data for: Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. (2021) Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy, Mutunga, Martin, Medley, Graham F., Nokes, D. James, Munywoki, Patrick K.

P

Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021) Pavelka, Martin, van Zandvoort, Kevin, Abbott, Sam, Sherratt, Katharine, Majdan, Marek, Jarcuska, Pavel, Krajci, Marek, Flasche, Stefan, Funk, Sebastian

kieshaprem/synthetic-contact-matrices. (2021) Prem, Kiesha

rachaelpung/serial_interval_covid_b.1.617.2. (2021) Pung, Rachael

Q

cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy

cmmid/quar_test_contact_tracing. (2021) Quilty, Billy

W

reichlab/covidHubUtils. (2021) Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian