A

Alexander, N, Carabali, M and Lim, JK (2021). Data for: "Estimating force of infection from serologic surveys with imperfect tests". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002252.

B

Bosse, N, Abbott, S and Funk, S (2022). epiforecasts/covid.german.forecasts. [Data Collection]. Github. https://github.com/epiforecasts/covid.german.forecasts

Brotons, P, Bassat, Q, Lanaspa, M, Henares, D, Perez-Arguello, A, Madrid, L, Balcells, R, Acacio, S, Andres-Franch, M, Marcos, MA, Valero-Rello, A and Muñoz-Almagro, C (2017). Nasopharyngeal bacterial load as a marker for rapid and easy diagnosis of invasive pneumococcal disease in children from Mozambique: Supporting data for the manuscript results. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0184762.s001

F

Finch, E and Kucharski, AJ (2022). EmilieFinch/covid-reinfection. [Data Collection]. Github. https://github.com/EmilieFinch/covid-reinfection

G

Gibbs, H (2021). cmmid/uk_movement_communities_covid. [Data Collection]. Github. https://github.com/cmmid/uk_movement_communities_covid

Gombe, B, Streatfield, C, Leal, L, Opio, S, Joseph, S, Weber, J, Hare, J, Kaleebu, P and Serwanga, J (2022). Optimization and validation of an ELISA assay for the determination of antibody responses to CN54gp140 and AIDSVAX BE for use in the Phase IIb PrEPVacc vaccine trial. S1 Data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0275927.s001

Grant-McAuley, W, Klock, E, Laeyendecker, O, Piwowar-Manning, E, Wilson, E, Clarke, W, Breaud, A, Moore, A, Ayles, H, Kosloff, B, Shanaube, K, Bock, P, Mandla, N, van Deventer, A, Fidler, S, Donnell, D, Hayes, R and Eshleman, SH (2021). Evaluation of multi-assay algorithms for identifying individuals with recent HIV infection: HPTN 071 (PopART). Minimum dataset, seroconverters. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0258644.s004

K

Kaswaswa, K, MacPherson, P, Kumwenda, M, Mpunga, J, Thindwa, D, Nliwasa, M, Mwapasa, M, Odland, J, Tomoka, T, Chipungu, G, Mukaka, M and Corbett, EL (2022). Effect of patient-delivered household contact tracing and prevention for tuberculosis: A household cluster-randomised trial in Malawi. Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1371/journal.pone.0269219.s002

Katende, A, Nakiyingi, L, Andia-Biraro, I, Katairo, T, Muhumuza, R, Ssemata, AS, Nsereko, C, Semitala, FC and Meya, DB (2022). Antiretroviral therapy initiation and outcomes of hospitalized HIV-infected patients in Uganda - An evaluation of the HIV test and treat strategy. Health care worker interview guide. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0268122.s002

Katende, A, Nakiyingi, L, Andia-Biraro, I, Katairo, T, Muhumuza, R, Ssemata, AS, Nsereko, C, Semitala, FC and Meya, DB (2022). Antiretroviral therapy initiation and outcomes of hospitalized HIV-infected patients in Uganda-An evaluation of the HIV test and treat strategy. Stata data set. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0268122.s001

Kitilya, B, PrayGod, G, Peck, R, Changalucha, J, Jeremiah, K, Kavishe, BB, Friis, H, Filteau, S, Faurholt-Jepsen, D, Krogh-Madsen, R, Brage, S and Olsen, MF (2022). S1 Questionnaire - Levels and correlates of physical activity and capacity among HIV-infected compared to HIV-uninfected individuals. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0262298.s001

L

Lazarus, JV, Ratzan, S, Palayew, A, Billari, FC, Binagwaho, A, Kimball, S, Larson, HJ, Melegaro, A, Rabin, K, White, TM and El-Mohandes, A (2020). COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0240011

Lin, LY (2021). liang-yu12/vd_covid. [Data Collection]. Github. https://github.com/liang-yu12/vd_covid

Lucinde, RK, Mugo, D, Bottomley, C, Karani, A, Gardiner, E, Aziza, R, Gitonga, JN, Karanja, H, Nyagwange, J, Tuju, J, Wanjiku, P, Nzomo, E, Kamuri, E, Thuranira, K, Agunda, S, Nyutu, G, Etyang, AO, Adetifa, IMO, Kagucia, E, Uyoga, S, Otiende, M, Otieno, E, Ndwiga, L, Agoti, CN, Aman, RA, Mwangangi, M, Amoth, P, Kasera, K, Nyaguara, A, Ng’ang’a, W, Ochola, LB, Namdala, E, Gaunya, O, Okuku, R, Barasa, E, Bejon, P, Tsofa, B, Ochola-Oyier, LI, Warimwe, GM, Agweyu, A, Scott, JAG and Gallagher, KE (2022). Stan code and input data for estimating adjusted seroprevalence. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0265478.s005

R

Rujumba, J, Homsy, J, Bannink, F, Namukwaya, Z, Amone, A, Rukundo, G, Katabira, E, Byamugisha, J, Fowler, MG and King, RL (2021). Interview excerpts by major themes and sub-themes perceptions of HIV self-testing in Kampala. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0253616.s003

S

Stangl, AL, Pliakas, T, Izazola-Licea, JA, Ayala, G, Beattie, TS, Ferguson, L, Orza, L, Mathur, S, Pulerwitz, J, Iovita, A and Bendaud, V (2022). S1 Data - Removing the societal and legal impediments to the HIV response: An evidence-based framework for 2025 and beyond. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0264249.s008

W

Wilson, E, Free, C, Morris, TP, Syred, J, Ahamed, I, Menon-Johansson, AS, Palmer, MJ, Barnard, S, Rezel, E and Baraitser, P (2017). Internet-accessed sexually transmitted infection (e-STI) testing and results service: A randomised, single-blind, controlled trial. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002479.s001