A

Alexander, N, Carabali, M and Lim, JK (2021). Data for: "Estimating force of infection from serologic surveys with imperfect tests". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002252.

B

Barreto, APA, Filho, MAB, Duarte, LC, Cerqueira-Silva, T, Camelier, A, Tavares, NM, Barral-Netto, M, Boaventura, V and Lima, MCC (2022). Dataset for: Metabolic disorders and post-acute hospitalization in black/mixed-race patients with long COVID in Brazil: A cross-sectional analysis. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0276771.s011

Bosse, N, Abbott, S and Funk, S (2022). epiforecasts/covid.german.forecasts. [Data Collection]. Github. https://github.com/epiforecasts/covid.german.forecasts

Brotons, P, Bassat, Q, Lanaspa, M, Henares, D, Perez-Arguello, A, Madrid, L, Balcells, R, Acacio, S, Andres-Franch, M, Marcos, MA, Valero-Rello, A and Muñoz-Almagro, C (2017). Nasopharyngeal bacterial load as a marker for rapid and easy diagnosis of invasive pneumococcal disease in children from Mozambique: Supporting data for the manuscript results. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0184762.s001

C

Chaila, MJ, Mcleod, D, Vermund, SH, Mbolongwe-Thornicroft, M, Mbewe, M, Mubekapi-Musadaidzwa, C, Harper, A, Schaap, A, Floyd, S, Hoddinott, G, Hayes, R, Fidler, S, Ayles, H and Shanaube, K (2024). Assessment of a screening tool to aid home-based identification of adolescents (aged 10–14) living with HIV in Zambia and South Africa: HPTN 071 (PopART) study. S1 Data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0266573.s001

F

Feasey, H (2022). SCALE prevalence survey. [Data Collection]. Open Science Framework. https://osf.io/eu2xf/

Finch, E and Kucharski, AJ (2022). EmilieFinch/covid-reinfection. [Data Collection]. Github. https://github.com/EmilieFinch/covid-reinfection

Fu, G, Huon, C, Marley, G, Tan, RKJ, Wu, D, Sheng, Q, Liu, Y, Byrne, ME, Tang, Q, Mu, R, Wang, C, Yang, L, Wang, T, Tang, W and Tucker, JD (2024). S1 Dataset for "Sociodemographic characteristics, community engagement and stigma among Men who have Sex with Men (MSM) who attend MSM-led versus public sexual health clinics: A cross-sectional survey in China". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0310957.s003

G

Gaskell, KM, El kheir, N, Mirfendesky, M, Rampling, T, Marks, M, Houlihan, CF, Lemonge, N, Bristowe, H, Aslam, S, Kyprianou, D, Nastouli, E, Goldblatt, D, Fielding, K and Moore, DAJ (2023). S1 Data for: "Comparison of new and emerging SARS-CoV-2 variant transmissibility through active contact testing. A comparative cross-sectional household seroprevalence study". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0284372.s003

Gibbs, H (2021). cmmid/uk_movement_communities_covid. [Data Collection]. Github. https://github.com/cmmid/uk_movement_communities_covid

Gibbs, H (2021). hamishgibbs/ghana_rt_npi_mobility. [Data Collection]. Github. https://github.com/hamishgibbs/ghana_rt_npi_mobility

Gombe, B, Streatfield, C, Leal, L, Opio, S, Joseph, S, Weber, J, Hare, J, Kaleebu, P and Serwanga, J (2022). Optimization and validation of an ELISA assay for the determination of antibody responses to CN54gp140 and AIDSVAX BE for use in the Phase IIb PrEPVacc vaccine trial. S1 Data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0275927.s001

Grant-McAuley, W, Klock, E, Laeyendecker, O, Piwowar-Manning, E, Wilson, E, Clarke, W, Breaud, A, Moore, A, Ayles, H, Kosloff, B, Shanaube, K, Bock, P, Mandla, N, van Deventer, A, Fidler, S, Donnell, D, Hayes, R and Eshleman, SH (2021). Evaluation of multi-assay algorithms for identifying individuals with recent HIV infection: HPTN 071 (PopART). Minimum dataset, seroconverters. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0258644.s004

K

Kaswaswa, K, MacPherson, P, Kumwenda, M, Mpunga, J, Thindwa, D, Nliwasa, M, Mwapasa, M, Odland, J, Tomoka, T, Chipungu, G, Mukaka, M and Corbett, EL (2022). Effect of patient-delivered household contact tracing and prevention for tuberculosis: A household cluster-randomised trial in Malawi. Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1371/journal.pone.0269219.s002

Katende, A, Nakiyingi, L, Andia-Biraro, I, Katairo, T, Muhumuza, R, Ssemata, AS, Nsereko, C, Semitala, FC and Meya, DB (2022). Antiretroviral therapy initiation and outcomes of hospitalized HIV-infected patients in Uganda - An evaluation of the HIV test and treat strategy. Health care worker interview guide. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0268122.s002

Katende, A, Nakiyingi, L, Andia-Biraro, I, Katairo, T, Muhumuza, R, Ssemata, AS, Nsereko, C, Semitala, FC and Meya, DB (2022). Antiretroviral therapy initiation and outcomes of hospitalized HIV-infected patients in Uganda-An evaluation of the HIV test and treat strategy. Stata data set. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0268122.s001

Kitilya, B, PrayGod, G, Peck, R, Changalucha, J, Jeremiah, K, Kavishe, BB, Friis, H, Filteau, S, Faurholt-Jepsen, D, Krogh-Madsen, R, Brage, S and Olsen, MF (2022). S1 Questionnaire - Levels and correlates of physical activity and capacity among HIV-infected compared to HIV-uninfected individuals. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0262298.s001

L

Lazarus, JV, Ratzan, S, Palayew, A, Billari, FC, Binagwaho, A, Kimball, S, Larson, HJ, Melegaro, A, Rabin, K, White, TM and El-Mohandes, A (2020). COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0240011

Lin, LY (2021). liang-yu12/vd_covid. [Data Collection]. Github. https://github.com/liang-yu12/vd_covid

Lucinde, RK, Mugo, D, Bottomley, C, Karani, A, Gardiner, E, Aziza, R, Gitonga, JN, Karanja, H, Nyagwange, J, Tuju, J, Wanjiku, P, Nzomo, E, Kamuri, E, Thuranira, K, Agunda, S, Nyutu, G, Etyang, AO, Adetifa, IMO, Kagucia, E, Uyoga, S, Otiende, M, Otieno, E, Ndwiga, L, Agoti, CN, Aman, RA, Mwangangi, M, Amoth, P, Kasera, K, Nyaguara, A, Ng’ang’a, W, Ochola, LB, Namdala, E, Gaunya, O, Okuku, R, Barasa, E, Bejon, P, Tsofa, B, Ochola-Oyier, LI, Warimwe, GM, Agweyu, A, Scott, JAG and Gallagher, KE (2022). Stan code and input data for estimating adjusted seroprevalence. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0265478.s005

O

Okek, EJ, Masembe, FJ, Kiconco, J, Kayiwa, J, Amwine, E, Obote, D, Alele, S, Nahabwe, C, Were, J, Bagaya, B, Balinandi, S, Lutwama, J and Kaleebu, P (2024). Re-testing as a method of implementing external quality assessment program for COVID-19 real time PCR testing in Uganda. S1 Data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0287272.s001

R

Renneker, KK, Mtuy, TB, Kabona, G, Mbwambo, SG, Mosha, P, Mollel, JM, Hooper, P, Emerson, PM, Hollingsworth, TD, Butcher, R, Solomon, AW and Harding-Esch, EM (2024). Framework Matrix. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011941.s004

Renneker, KK, Mtuy, TB, Kabona, G, Mbwambo, SG, Mosha, P, Mollel, JM, Hooper, P, Emerson, PM, Hollingsworth, TD, Butcher, R, Solomon, AW and Harding-Esch, EM (2024). SHS Questionnaire. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011941.s003

Rujumba, J, Homsy, J, Bannink, F, Namukwaya, Z, Amone, A, Rukundo, G, Katabira, E, Byamugisha, J, Fowler, MG and King, RL (2021). Interview excerpts by major themes and sub-themes perceptions of HIV self-testing in Kampala. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0253616.s003

S

Stangl, AL, Pliakas, T, Izazola-Licea, JA, Ayala, G, Beattie, TS, Ferguson, L, Orza, L, Mathur, S, Pulerwitz, J, Iovita, A and Bendaud, V (2022). S1 Data - Removing the societal and legal impediments to the HIV response: An evidence-based framework for 2025 and beyond. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0264249.s008

W

Wilson, E, Free, C, Morris, TP, Syred, J, Ahamed, I, Menon-Johansson, AS, Palmer, MJ, Barnard, S, Rezel, E and Baraitser, P (2017). Internet-accessed sexually transmitted infection (e-STI) testing and results service: A randomised, single-blind, controlled trial. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002479.s001