Keywords
Number of items: 14.
Dataset
  • Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. (2023) Foster-Nyarko, Ebenezer, Holt, Kathryn E., Cottingham, Hugh, Wick, Ryan, Judd, Louise M., Lam, Margaret, Wyres, Kelly L., Stanton, Thomas, Tsang, Kara K., David, Sophia, Bridel, Sébastien, Palma, Federica, Aanensen, David M, Brisse, Sylvain
  • Kleborate v2.0.0. (2020) Holt, Kathryn E., Lam, Margaret, Wick, Ryan
  • Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae. (2025) Lam, Margaret M. C., Salisbury, Stephen M., Treat, Logan P., Wick, Ryan R., Judd, Louise M., Wyres, Kelly L, Brisse, Sylvain, Walker, Kimberly A, Miller, Virginia L, Holt, Kathryn E.
  • Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". (2023) London School of Hygiene & Tropical Medicine
  • Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination. (2018) M. C. Lam, Margaret, Wyres, Kelly L., Duchêne, Sebastian, Wick, Ryan R., Judd, Louise M., Gan, Yunn-Hwen, Hoh, Chu-Han, Archuleta, Sophia, Molton, James S., Kalimuddin, Shirin, Koh, Tse Hsien, Passet, Virginie, Brisse, Sylvain, Holt, Kathryn E.
  • Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. (2017) Moradigaravand, Danesh, Martin, Veronique, Peacock, Sharon, Parkhill, Julian
  • Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. (2019) Musicha, Patrick, Msefula, Chisomo L, Mather, Alison E, Chaguza, Chrispin, Cain, Amy K, Peno, Chikondi, Kallonen, Teemu, Khonga, Margaret, Denis, Brigitte, Gray, Katherine J, Heyderman, Robert S, Thomson, Nicholas R, Everett, Dean B, Feasey, Nicholas A
  • Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. (2017) Runcharoen, Chakkaphan, Moradigaravand, Danesh, Blane, Beth, Paksanont, Suporn, Thammachote, Jeeranan, Anun, Suthatip, Parkhill, Julian, Chantratita, Narisara, Peacock, Sharon J.
  • klebgenomics/Kleborate: v3.0.0. (2024) Ryan Wick, Holt, Kathryn E., marlam89, kelwyres, Maranga, Mary, Petit III, Robert A., da Silva, Anders Goncalves, Deveaud, Eric, Lampa, Samuel, Stanton, Tom
  • klebgenomics/Kaptive. (2025) Wick, Ryan R., Stanton, Thomas, Wyres, Kelly L, Holt, Kathryn E.
  • katholt/Kaptive. (2022) Wick, Ryan, kelwyres, Holt, Kathryn E.
  • Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". (2020) Wyres, Kelly L., Nguyen, To N. T., Lam, Margaret M. C., Judd, Louise M., van Vinh Chau, Nguyen, Dance, David A. B., Ip, Margaret, Karkey, Abhilasha, Ling, Clare L., Miliya, Thyl, Newton, Paul N., Lan, Nguyen Phu Huong, Sengduangphachanh, Amphone, Turner, Paul, Veeraraghavan, Balaji, Vinh, Phat Voong, Vongsouvath, Manivanh, Thomson, Nicholas R., Baker, Stephen, Holt, Kathryn E.
  • Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. (2019) Wyres, Kelly L, Wick, Ryan R, Judd, Louise M, Froumine, Roni, Tokolyi, Alex, Gorrie, Claire L, Lam, Margaret MC, Duchêne, Sebastián, Jenney, Adam, Holt, Kathryn
  • katholt/RedDog. (2022) d-j-e, Holt, Kathryn E., Wyres, Kelly L