Keywords
Number of items: 14.
Dataset
  • Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. (2023) Foster-Nyarko, Ebenezer; Holt, Kathryn E.; Cottingham, Hugh; Wick, Ryan; Judd, Louise M.; Lam, Margaret; Wyres, Kelly L.; Stanton, Thomas; Tsang, Kara K.; David, Sophia; Bridel, Sébastien; Palma, Federica; Aanensen, David M; Brisse, Sylvain
  • Kleborate v2.0.0. (2020) Holt, Kathryn E.; Lam, Margaret; Wick, Ryan
  • Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae. (2025) Lam, Margaret M. C.; Salisbury, Stephen M.; Treat, Logan P.; Wick, Ryan R.; Judd, Louise M.; Wyres, Kelly L; Brisse, Sylvain; Walker, Kimberly A; Miller, Virginia L; Holt, Kathryn E.
  • Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". (2023) London School of Hygiene & Tropical Medicine
  • Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination. (2018) M. C. Lam, Margaret; Wyres, Kelly L.; Duchêne, Sebastian; Wick, Ryan R.; Judd, Louise M.; Gan, Yunn-Hwen; Hoh, Chu-Han; Archuleta, Sophia; Molton, James S.; Kalimuddin, Shirin; Koh, Tse Hsien; Passet, Virginie; Brisse, Sylvain; Holt, Kathryn E.
  • Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. (2017) Moradigaravand, Danesh; Martin, Veronique; Peacock, Sharon; Parkhill, Julian
  • Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. (2019) Musicha, Patrick; Msefula, Chisomo L; Mather, Alison E; Chaguza, Chrispin; Cain, Amy K; Peno, Chikondi; Kallonen, Teemu; Khonga, Margaret; Denis, Brigitte; Gray, Katherine J; Heyderman, Robert S; Thomson, Nicholas R; Everett, Dean B; Feasey, Nicholas A
  • Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. (2017) Runcharoen, Chakkaphan; Moradigaravand, Danesh; Blane, Beth; Paksanont, Suporn; Thammachote, Jeeranan; Anun, Suthatip; Parkhill, Julian; Chantratita, Narisara; Peacock, Sharon J.
  • klebgenomics/Kleborate: v3.0.0. (2024) Ryan Wick; Holt, Kathryn E.; marlam89; kelwyres; Maranga, Mary; Petit III, Robert A.; da Silva, Anders Goncalves; Deveaud, Eric; Lampa, Samuel; Stanton, Tom
  • klebgenomics/Kaptive. (2025) Wick, Ryan R.; Stanton, Thomas; Wyres, Kelly L; Holt, Kathryn E.
  • katholt/Kaptive. (2022) Wick, Ryan; kelwyres; Holt, Kathryn E.
  • Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". (2020) Wyres, Kelly L.; Nguyen, To N. T.; Lam, Margaret M. C.; Judd, Louise M.; van Vinh Chau, Nguyen; Dance, David A. B.; Ip, Margaret; Karkey, Abhilasha; Ling, Clare L.; Miliya, Thyl; Newton, Paul N.; Lan, Nguyen Phu Huong; Sengduangphachanh, Amphone; Turner, Paul; Veeraraghavan, Balaji; Vinh, Phat Voong; Vongsouvath, Manivanh; Thomson, Nicholas R.; Baker, Stephen; Holt, Kathryn E.
  • Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. (2019) Wyres, Kelly L; Wick, Ryan R; Judd, Louise M; Froumine, Roni; Tokolyi, Alex; Gorrie, Claire L; Lam, Margaret MC; Duchêne, Sebastián; Jenney, Adam; Holt, Kathryn
  • katholt/RedDog. (2022) d-j-e; Holt, Kathryn E.; Wyres, Kelly L