Data Collection

Armitage, E (2022). SpyCATS REDCap Data Dictionary. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7463051

Bonell, A, Badjie, J, Jammeh, S, Ali, Z, Hydara, M, Davies, A, Faal, M, Ahmed, AN, Hand, W, Prentice, AM, Murray, K and Scheelbeek, P (2022). Climate Change mitigation and adaption options in the local environment: climate change solutions festival. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.00002767.

Coulibaly, A, Diop, MF, Kone, A, Dara, A, Ouattara, A, Mulder, N, Miotto, O, Diakite, M, Djimde, A and Amambua-Ngwa, A (2022). Table1_Genome-wide SNP analysis of Plasmodium falciparum shows differentiation at drug-resistance-associated loci among malaria transmission settings in southern Mali. [Data Collection]. Frontiers. https://doi.org/10.3389/fgene.2022.943445.s002

Dadari, I, Ropiti, L, Patson, A, Okia, P, Narasia, J, Hare’e, T, Namohunu, S, Ogaoga, D, Gaiofa, J and Usuf, E (2022). An assessment of vaccine wastage in the Solomon Islands. S1 Data. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0000572.s002

Dadari, I and Usuf, E (2022). Medicines wastage data. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0000181.s001

Jarju, S, Senghore, E, Brotherton, H, Saidykhan, A, Jallow, S, Krubally, E, Sinjanka, E, Ndene, MN, Bajo, F, Sanyang, MM, Saidy, B, Bah, A, Mohammed, NI, Forrest, K, Clarke, E, Dalessandro, U, Sesay, AK, Usuf, E, Cerami, C, Roca, A, Kampmann, B and De silva, T (2022). Circulation of respiratory viruses during the COVID-19 pandemic in the Gambia. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/TSF78

London School of Hygiene & Tropical Medicine (2022). Plasmodium falciparum sequencing Bijagos Archipelago 2018. [Data Collection]. NIH National Library of Medicine. https://www.ncbi.nlm.nih.gov/bioproject/905557

MRC Unit The Gambia at LSHTM (2022). Genetic diversity of P. malariae in sub-Saharan Africa. [Data Collection]. NCBI BioProject. https://www.ncbi.nlm.nih.gov/bioproject/873023

Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S, Sutherland, JS, Winter, J, Kuivaniemi, H, Walzl, G and Tromp, G (2022). Gene ontology (GO) enrichment analysis results for significantly upregulated genes at all time points. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s003

Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S, Sutherland, JS, Winter, J, Kuivaniemi, H, Walzl, G and Tromp, G (2022). KEGG and gene ontology (GO) enrichment analyses for significantly differentially expressed genes between low and high PET score groups for the terms and pathways identified in the main analyses. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s005

Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S, Sutherland, JS, Winter, J, Kuivaniemi, H, Walzl, G and Tromp, G (2022). KEGG pathway enrichment analysis results for significantly differentially expressed genes at all time points. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s004

Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S, Sutherland, JS, Winter, J, Kuivaniemi, H, Walzl, G and Tromp, G (2022). List of differentially expressed genes at all time points. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s002

Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S, Sutherland, JS, Winter, J, Kuivaniemi, H, Walzl, G and Tromp, G (2022). PET scores for the catalysis study specimens. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s001

Ndlangisa, KM, du Plessis, M, Lo, S, de Gouveia, L, Chaguza, C, Antonio, M, Kwambana-Adams, B, Cornick, J, Everett, DB, Dagan, R, Hawkins, PA, Beall, B, Corso, A, Grassi Almeida, SC, Ochoa, TJ, Obaro, S, Shakoor, S, Donkor, ES, Gladstone, RA, Ho, PL, Paragi, M, Doiphode, S, Srifuengfung, S, Ford, R, Moïsi, J, Saha, SK, Bigogo, G, Sigauque, B, Eser, Özgen Köseoglu, Elmdaghri, N, Titov, L, Turner, P, Kumar, KLR, Kandasamy, R, Egorova, E, IP, M, Breiman, RF, Klugman, KP, McGee, L, Bentley, SD and von Gottberg, A (2022). A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. [Data Collection]. Microbiology Society. https://doi.org/10.6084/m9.figshare.16621984.v1

Olubiyi, OA, Rotimi, BF, Afolayan, MA, Alatishe-Muhammad, BW, Olubiyi, OM and Dahiru Balami, A (2022). Additional file 1 of The ten-year risk of developing cardiovascular disease among public health workers in North-Central Nigeria using Framingham and atherogenic index of plasma risk scores. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19669987.v1

Shah, V, Torondel, B and Nabwera, H (2022). Supplementary material for paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6338746