Item Type Date Title No Grouping

superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. (2025) Lambert, Joshua W., Kucharski, Adam J., Adam, Dillon C., Funk, Sebastian, Gupte, Pratik, Gruson, Hugo, Azam, James M., Hartgerink, Chris

simulist: Simulate Disease Outbreak Line List and Contacts Data. (2025) Lambert, Joshua W., Tamayo, Carmen, Gruson, Hugo, Gupte, Pratik R., Kucharski, Adam J., Hartgerink, Chris, Funk, Sebastian

joshwlambert/DAISIEprepExtra. (2024) Lambert, Joshua W.

epiparameterDB: Database of Epidemiological Parameters. (2024) Lambert, Joshua W., Kucharski, Adam J., Tamayo, Carmen

epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models. (2024) Azam, James M., Funk, Sebastian, Finger, Flavio, Kamvar, Zhian N., Gruson, Hugo, Mané, Karim, Gupte, Pratik, Lambert, Joshua W.

DAISIEmainland. (2024) Lambert, Joshua W., Bilderbeek, Richèl, Santos Neves, Pedro

cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris

cfr: Estimate Disease Severity and Case Ascertainment. (2024) Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian

numberize: Convert Words to Numbers in Multiple Languages. (2024) Hartgerink, Chris, Lambert, Joshua W., Mané, Karim, Gruson, Hugo, Ahadzie, Bankole

finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.

epiverse-trace/simulist. (2024) Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Tamayo Cuartero, Carmen

rsetienne/DAISIE. (2023) Neves, Pedro Santos, Lambert, Joshua W., Etienne, Rampal S., Bilderbeek, Richel, Xie, Shu, Valente, Luis, Hildenbrandt, H, Scherrer, Raphaël, Yangshen0325

DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023) Etienne, Rampal S., Valente, Luis, Phillimore, Albert B., Haegeman, Bart, Lambert, Joshua W., Santos Neves, Pedro, Xie, Shu, Bilderbeek, Richèl J.C., Hildenbrandt, Hanno, Hauffe, Torsten, Laudanno, Giovanni, Kristensen, Nadiah, Scherrer, Raphael

epiverse-trace/epiparameter. (2023) Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Gupte, Pratik, Salmon, Maëlle, Campos, Andree Valle, Monticone, Pietro

epiverse-trace. (2023) Pavlich-Mariscal, Jaime, Eggo, Rosalind M., Kucharski, Adam J., Gruson, Hugo, Russell, Timothy W., Valle Campos, Andree, Cucunubá, Zulma M., Santos-Vega, Mauricio, Gupte, Pratik, Azam, James, Torres Domínguez, Nicolás, Lambert, Joshua, Gomez, Geraldine, Umaña, Juan D., Quevedo-Vega, David Santiago, Gámez López, Miguel Enrique, Carnegie, Anna