Item Type Date No Grouping

AmpliconTyper. (2025) Spadar, Anton, Mahindroo, Jaspreet, Troman, Catherine, Owusu, Michael, Adu-Sarkodie, Yaw, Abraham, Dilip, Blossom Benny, Govindan, Karthikeyan, Mohan, Venkata Raghava, Dyson, Zoe Anne, Grassly, Nicholas, Holt, Kathryn E.

typhoidgenomics/genotyphi. (2024) Holt, Kathryn E., Dyson, Zoe Anne, Hawkey, Jane, flashton2003

amrnet/amrnet: AMRnet-v1.0. (2024) Cerdeira, Louise, Sharma, Vandana, Maranga, Mary, Carey, Megan, Dyson, Zoe Anne, Holt, Kathryn E.

typhoidgenomics/TyphiNET. (2023) Cerdeira, Louise, Dyson, Zoe Anne, Holt, Kathryn E.

zadyson/SNV_Stats_Generator. (2022) Dyson, Zoe Anne

Accession numbers and data for S. Typhi sequences used in this study. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Outgroups used for phylogenetic tree rooting. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

zadyson/TyphiNET. (2022) Cerdeira, Louise, Dyson, Zoe Anne

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers. (2019) Ingle, Danielle J., Nair, Satheesh, Hartman, Hassan, Ashton, Philip M., Dyson, Zoe, Day, Martin, Freedman, Joanne, Chattaway, Marie A., Holt, Kathryn E., Dallman, Timothy J.