Genomic Surveillance of Third-Generation Cephalosporin-Resistant Klebsiella pneumoniae in Tunisian Hospitals

London School of Hygiene & Tropical Medicine (2025). Genomic Surveillance of Third-Generation Cephalosporin-Resistant Klebsiella pneumoniae in Tunisian Hospitals. [Dataset]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB98550
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Third-generation cephalosporin-resistant (3GCR) Klebsiella pneumoniae was recently classified by the WHO as a critical priority. We provide a genomic baseline for Tunisia by sequencing 286 3GCR clinical isolates (blood, urine) collected in 2018–2022 from three tertiary hospitals within the national surveillance system (TARSS). The dataset enables tracking of high-risk clones, plasmid backgrounds, AMR-virulence convergence, and exploratory transmission.

Alternative Title

Project: PRJEB98550

Additional Information

Supporting data can be found at https://github.com/danaitani/Tunisia_kpn_WGS_metadata/

Keywords

Klebsiella pneumoniae; Tunisia

Item Type Dataset
Resource Type
Resource Type
Resource Description
Dataset
Quantitative
Capture method Experiment: Laboratory
Date 1 November 2025
Language(s) of written materials English
Creator(s) London School of Hygiene & Tropical Medicine
Associated roles Itani, D (Researcher)
LSHTM Faculty/Department Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019)
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited 26 Aug 2026 10:38
Last Modified 27 Aug 2026 12:29
Publisher European Nucleotide Archive

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