klebgenomics/Kleborate: v3.0.0

Ryan Wick, Holt, KEORCID logo, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T (2024). klebgenomics/Kleborate: v3.0.0. [Dataset]. Zenodo. https://doi.org/10.5281/zenodo.13683348
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Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.

Keywords

Genome assemblies, Klebsiella pneumoniae, Klebsiella pneumoniae

Item Type Dataset
Capture method Other
Date 4 September 2024
Language(s) of written materials English
Creator(s) Ryan Wick, Holt, KEORCID logo, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T
LSHTM Faculty/Department Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019)
Participating Institutions University of Melbourne, Melbourne, Australia, Wyoming Public Health Laboratory, Wyoming, United States, London School of Hygiene & Tropical Medicine, London, United Kingom, Institut Pasteur, Paris, France, Karolinska University Hospital, Solna, Sweden, Monash University, Melbourne, Australia
Date Deposited 04 Sep 2024 12:29
Last Modified 28 Oct 2024 17:39
Publisher Zenodo

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