klebgenomics/Kleborate: v3.0.0
Ryan Wick, Holt, KE
, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T
(2024).
klebgenomics/Kleborate: v3.0.0.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.13683348
, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T
(2024).
klebgenomics/Kleborate: v3.0.0.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.13683348
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.
Keywords
Genome assemblies; Klebsiella pneumoniae; Klebsiella pneumoniae| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software Python script |
| Capture method | Other |
| Date | 4 September 2024 |
| Language(s) of written materials | English |
| Creator(s) |
Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | University of Melbourne, Melbourne, Australia; Wyoming Public Health Laboratory, Wyoming, United States; London School of Hygiene & Tropical Medicine, London, United Kingom; Institut Pasteur, Paris, France; Karolinska University Hospital, Solna, Sweden; Monash University, Melbourne, Australia |
| Date Deposited | 04 Sep 2024 12:29 |
| Last Modified | 28 Oct 2024 17:39 |
| Publisher | Zenodo |
| Available Versions of this Item |
|
No files available. Please consult associated links.
