Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T. 2024. klebgenomics/Kleborate: v3.0.0. [Online]. Zenodo. Available from: https://doi.org/10.5281/zenodo.13683348
Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T. klebgenomics/Kleborate: v3.0.0 [Internet]. Zenodo; 2024. Available from: https://doi.org/10.5281/zenodo.13683348
Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T (2024). klebgenomics/Kleborate: v3.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13683348
Description
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.
Data capture method | Other |
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Date (Date published in a 3rd party system) | 4 September 2024 |
Language(s) of written materials | English |
Data Creators | Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T |
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LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
Participating Institutions | University of Melbourne, Melbourne, Australia, Wyoming Public Health Laboratory, Wyoming, United States, London School of Hygiene & Tropical Medicine, London, United Kingom, Institut Pasteur, Paris, France, Karolinska University Hospital, Solna, Sweden, Monash University, Melbourne, Australia |
Date Deposited | 04 Sep 2024 12:29 |
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Last Modified | 28 Oct 2024 17:39 |
Publisher | Zenodo |
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Kleborate. (deposited 28 Sep 2020 11:14)
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klebgenomics/Kleborate: v2.5. (deposited 02 Sep 2024 15:30)
- klebgenomics/Kleborate: v3.0.0. (deposited 04 Sep 2024 12:29) [Currently Displayed]
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klebgenomics/Kleborate: v2.5. (deposited 02 Sep 2024 15:30)