Kleborate

Holt, KEORCID logo (2020). Kleborate. [Dataset]. Github. https://github.com/katholt/Kleborate
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Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.

Keywords

Genome assemblies, Klebsiella pneumoniae, Klebsiella pneumoniae

Item Type Dataset
Capture method Other
Date 20 August 2020
Language(s) of written materials English
Creator(s) Holt, KEORCID logo
LSHTM Faculty/Department Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019)
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingom
Date Deposited 28 Sep 2020 11:14
Last Modified 08 Jul 2021 12:50
Publisher Github

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