Kleborate
Holt, KE
(2020).
Kleborate.
[Dataset].
Github.
https://github.com/katholt/Kleborate
(2020).
Kleborate.
[Dataset].
Github.
https://github.com/katholt/Kleborate
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.
Keywords
Genome assemblies; Klebsiella pneumoniae; Klebsiella pneumoniae| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software Python script |
| Capture method | Other |
| Date | 20 August 2020 |
| Language(s) of written materials | English |
| Creator(s) |
Holt, KE
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingom |
| Date Deposited | 28 Sep 2020 11:14 |
| Last Modified | 08 Jul 2021 12:50 |
| Publisher | Github |
| Available Versions of this Item |
|
No files available. Please consult associated links.
