Holt, KE. 2020. Kleborate. [Online]. Github. Available from: https://github.com/katholt/Kleborate
Holt, KE. Kleborate. [Internet] LSHTM Data Compass. Github; 2020. Available from: https://github.com/katholt/Kleborate
Holt, KE (2020). Kleborate. [Data Collection]. Github. https://github.com/katholt/Kleborate
Description
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.
| Data capture method | Other |
|---|---|
| Date (Published in a 3rd party system) | 20 August 2020 |
| Language(s) of written materials | English |
| Data Creators | Holt, KE |
|---|---|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingom |
| Depositor | Gareth Knight |
|---|---|
| Date Deposited | 28 Sep 2020 11:14 |
| Last Modified | 28 Sep 2020 11:14 |
| Publisher | Github |
