Sumner, T. 2022. tomsumner/Variance_SA_TB. [Online]. GitHub. Available from: https://github.com/tomsumner/Variance_SA_TB
Sumner, T. tomsumner/Variance_SA_TB [Internet]. GitHub; 2022. Available from: https://github.com/tomsumner/Variance_SA_TB
Sumner, T (2022). tomsumner/Variance_SA_TB. [Data Collection]. GitHub. https://github.com/tomsumner/Variance_SA_TB
Description
This contains the code used in "Variance-based sensitivity analysis of TB transmission models": Model_1_intervention_event.R <- function for model 1 (serial infected states) with intervention coded as an event (using package FME); Model_2_intervention_event.R <- function for model 2 (parallel infected states) with intervention coded as an event (using package FME); intervention_event.R <- fucntion to define the intervention as a event for use in the ODE models; SS_1_beta.R <- code to solve steady state solution for model 1 (serial infected states) for beta; SS_2_beta.R <- code to solve steady state solution for model 2 (parallel infected states) for beta; Par_dist_gen <- fits distributions to input quantiles taken from literature, uses package RRiskDistributions; Run_model <- code to run the model for each row in an input matrix and return the reductions in incidence and mortality over 1 and 10 years; Sobol_analysis_intervention_event_individual.R <- code to calculate the Sobol indicies for individual inputs and generate outputs, uses Sensobol package; Sobol_analysis_intervention_event_grouped.R <- code to calculate the Sobol indicies for grouped inputs and generate outputs, uses Sensobol package.
Keywords
Data capture method | Other |
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Date (Date published in a 3rd party system) | 7 June 2022 |
Language(s) of written materials | English |
Data Creators | Sumner, T |
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LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
Research Centre | Centre for the Mathematical Modelling of Infectious Diseases TB Centre |
Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
Funders |
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Date Deposited | 06 Jul 2023 11:02 |
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Last Modified | 06 Jul 2023 11:02 |
Publisher | GitHub |